Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0015023

Physical Location & Seq

Genomic Coordinates Forward (+)

25452013 .. 25453053

Gene Structure 1041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G276500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGGTCTGCGATTCTCAGAGGCGCCTGAATACACAAACGGATTGAGCTGCCCTGTTTTGGGTCTGAATTTGAAGAGTTTGGCATTGGCTTGCAATCCCTCGCTTGTTCACGTCGCGATGACCATTGATTCAGAGTACTTGAGAGGCACCATGGCTGCAGTTCACTCTGTTCTCAAGCACGCTTCTTGCCCAGACAACACCTTCTTCCACTTCATCGCCTCAGATTCAATTTTGGTCAATTTACAGGACCTCACTCGCATTGTCCAATCCACCTTCCCTTCCCTGAGTTTCAGAGTTTATGTTTTCAGGGAAAGACTCGTCAACAATCTGATTTCGTCTTCGATTCGACAAGCTCTCGACAACCCATTGAACTACGCGAGAAGCTACTTAGCTGACTTGCTCGACCCCTGTGTGGAGAGAGTGATTTATCTCGACTCTGATGTCATAGTTGTGGATGATGTGCAGAAGCTATGGAAGATTTCTTTATCTGGGTCGAGAGTGATTGGTGCTCCAGAATATTGCCATGCAAATTTTACCAAGTATTTTTCTGATGGGTTTTGGAAAGACTCTGAGCTCTCTAAAGTTTTTGAAGGGAAAAAGCCTTGTTATTTCAATACAGGTGTTATGGTGATGGATTTGGTGAGGTGGAGAGAGGGTGAGTATACGAAAAAGATTGAGAATTGGATGGCGATTCAGAAGGAGAGGAGGATTTATGAGCTGGGTTCTCTTCCACCATTTTTACTGGTTTTTGGTGGAGATGTTGAGGCCATCCACCATAGATGGAACCAGCATGGGCTTGGGGGTGACAATATGGTGAACAGTTGCAGGTCTTTGCATCCAGGTCCTGTTAGCTTGTTGCATTGGAGTGGTAGAGGGAAGCCATGGTCGAGGCTGGATTTGGGAATGCCTTGTCCAGTTGATCTTCTGTGGGCGCCTTATGATCTCTACAAACACCATCACCACCATCATCTTCAAGATCAGCATCATCTTCAACATCAACATCACCACCACCAACAAACACAACAATTTTCAATGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0047262 GO:0050896 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

347

Amino Acids

39.68

Weight (kDa)

6.9

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28340
fragaria_vesca	FvH4_6g49810
malus_domestica	MD17G1042500.v1.1
prunus_persica	Prupe.3G276500_v2.0.a1
pyrus_communis	pycom111g03210 pycom17g03810
rosa_chinensis	RchiOBHm_Chr2g0169951
rosa_laevigata	RLG00000021913
rosa_multiflora	Rmu_co8421609.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081720
rosa_rugosa	Rorug02G0544600
rosa_samantha	Rh2AG616700 Rh2BG628500 Rh2CG597800 Rh2DG639500
rosa_wichuraiana	Rw2G051080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	440
Acc36I	ACCTGC	1 cut(s)	816
AccB1I	GGYRCC	3 cut(s)	22, 146, 931
AccI	GTMKAC	1 cut(s)	662
AccII	CGCG	2 cut(s)	116, 377
AcsI	RAATTY	2 cut(s)	67, 529
AcyI	GRCGYC	2 cut(s)	23, 932
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	3 cut(s)	58, 59, 412
AgsI	TTSAA	8 cut(s)	73, 228, 370, 590, 613, 974, 992, 1032
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	838
AluBI	AGCT	8 cut(s)	48, 353, 384, 392, 469, 574, 718, 852
AluI	AGCT	8 cut(s)	48, 353, 384, 392, 469, 574, 718, 852
Alw21I	GWGCWC	2 cut(s)	511, 576
AlwNI	CAGNNNCTG	1 cut(s)	845
AoxI	GGCC	1 cut(s)	765
ApeKI	GCWGC	2 cut(s)	48, 155
ApoI	RAATTY	2 cut(s)	67, 529
AspLEI	GCGC	2 cut(s)	25, 934
AspS9I	GGNCC	2 cut(s)	247, 842
AsuHPI	GGTGA	7 cut(s)	640, 652, 668, 815, 826, 950, 995
AvaII	GGWCC	2 cut(s)	247, 842
BanI	GGYRCC	3 cut(s)	22, 146, 931
BanII	GRGCYC	1 cut(s)	576
BbsI	GAAGAC	1 cut(s)	330
Bbv12I	GWGCWC	2 cut(s)	511, 576
BbvI	GCAGC	2 cut(s)	35, 142
BccI	CCATC	7 cut(s)	545, 625, 679, 774, 776, 963, 972
BciT130I	CCWGG	1 cut(s)	840
BfmI	CTRYAG	1 cut(s)	156
BfoI	RGCGCY	2 cut(s)	26, 935
BfuAI	ACCTGC	1 cut(s)	816
BisI	GCNGC	2 cut(s)	49, 156
BlsI	GCNGC	2 cut(s)	50, 157
BmcAI	AGTACT	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	840
Bme18I	GGWCC	2 cut(s)	247, 842
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	247, 842
BmiI	GGNNCC	4 cut(s)	24, 148, 785, 933
BmrFI	CCNGG	1 cut(s)	840
BmsI	GCATC	2 cut(s)	844, 991
BpiI	GAAGAC	1 cut(s)	330
BpmI	CTGGAG	1 cut(s)	495
BpuEI	CTTGAG	2 cut(s)	158, 160
BsaBI	GATNNNNATC	1 cut(s)	981
BsaHI	GRCGYC	2 cut(s)	23, 932
BsaJI	CCNNGG	2 cut(s)	150, 881
BsaXI	ACNNNNNCTCC	2 cut(s)	640, 670
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 59, 412
Bse1I	ACTGG	2 cut(s)	747, 914
Bse8I	GATNNNNATC	1 cut(s)	981
BseBI	CCWGG	1 cut(s)	840
BseDI	CCNNGG	2 cut(s)	150, 881
BseGI	GGATG	4 cut(s)	460, 690, 768, 835
BseJI	GATNNNNATC	1 cut(s)	981
BseLI	CCNNNNNNNGG	3 cut(s)	58, 59, 412
BseMII	CTCAG	4 cut(s)	30, 234, 275, 561
BseNI	ACTGG	2 cut(s)	747, 914
BseRI	GAGGAG	1 cut(s)	718
BseXI	GCAGC	2 cut(s)	35, 142
BseYI	CCCAGC	1 cut(s)	718
BsgI	GTGCAG	1 cut(s)	482
Bsh1236I	CGCG	2 cut(s)	116, 377
BshFI	GGCC	1 cut(s)	767
BshNI	GGYRCC	3 cut(s)	22, 146, 931
BsiHKAI	GWGCWC	2 cut(s)	511, 576
BslI	CCNNNNNNNGG	3 cut(s)	58, 59, 412
BsmI	GAATGC	1 cut(s)	909
BsnI	GGCC	1 cut(s)	767
Bsp1286I	GDGCHC	2 cut(s)	511, 576
Bsp143I	GATC	3 cut(s)	919, 940, 976
Bsp19I	CCATGG	2 cut(s)	150, 881
Bsp68I	TCGCGA	1 cut(s)	116
BspANI	GGCC	1 cut(s)	767
BspCNI	CTCAG	4 cut(s)	29, 233, 276, 562
BspFNI	CGCG	2 cut(s)	116, 377
BspLI	GGNNCC	4 cut(s)	24, 148, 785, 933
BspMAI	CTGCAG	1 cut(s)	160
BspMI	ACCTGC	1 cut(s)	816
BspT107I	GGYRCC	3 cut(s)	22, 146, 931
BsrI	ACTGG	2 cut(s)	747, 914
BssECI	CCNNGG	2 cut(s)	150, 881
BssMI	GATC	3 cut(s)	919, 940, 976
BssNAI	GTATAC	1 cut(s)	663
BssNI	GRCGYC	2 cut(s)	23, 932
BssT1I	CCWWGG	2 cut(s)	150, 881
Bst1107I	GTATAC	1 cut(s)	663
Bst2UI	CCWGG	1 cut(s)	840
Bst4CI	ACNGT	1 cut(s)	821
Bst6I	CTCTTC	2 cut(s)	68, 732
BstACI	GRCGYC	2 cut(s)	23, 932
BstC8I	GCNNGC	2 cut(s)	91, 180
BstDEI	CTNAG	5 cut(s)	16, 220, 284, 388, 570
BstDSI	CCRYGG	2 cut(s)	150, 881
BstF5I	GGATG	4 cut(s)	460, 690, 768, 835
BstFNI	CGCG	2 cut(s)	116, 377
BstH2I	RGCGCY	2 cut(s)	26, 935
BstHHI	GCGC	2 cut(s)	25, 934
BstKTI	GATC	3 cut(s)	922, 943, 979
BstMBI	GATC	3 cut(s)	919, 940, 976
BstNI	CCWGG	1 cut(s)	840
BstSCI	CCNGG	1 cut(s)	838
BstSFI	CTRYAG	1 cut(s)	156
BstUI	CGCG	2 cut(s)	116, 377
BstV1I	GCAGC	2 cut(s)	35, 142
BstV2I	GAAGAC	1 cut(s)	330
BstZ17I	GTATAC	1 cut(s)	663
BsuRI	GGCC	1 cut(s)	767
BtgI	CCRYGG	2 cut(s)	150, 881
BtgZI	GCGATG	2 cut(s)	131, 199
BtrI	CACGTC	1 cut(s)	112
BtsCI	GGATG	4 cut(s)	460, 690, 768, 835
BtuMI	TCGCGA	1 cut(s)	116
BveI	ACCTGC	1 cut(s)	816
Cac8I	GCNNGC	2 cut(s)	91, 180
CaiI	CAGNNNCTG	1 cut(s)	845
CfoI	GCGC	2 cut(s)	25, 934
Cfr13I	GGNCC	2 cut(s)	247, 842
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	4 cut(s)	151, 524, 791, 882
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	5 cut(s)	16, 220, 284, 388, 570
DinI	GGCGCC	2 cut(s)	24, 933
DpnI	GATC	3 cut(s)	921, 942, 978
DpnII	GATC	3 cut(s)	919, 940, 976
DrdI	GACNNNNNNGTC	1 cut(s)	440
DseDI	GACNNNNNNGTC	1 cut(s)	440
Eam1104I	CTCTTC	2 cut(s)	68, 732
EarI	CTCTTC	2 cut(s)	68, 732
Ecl136II	GAGCTC	1 cut(s)	574
Eco130I	CCWWGG	2 cut(s)	150, 881
Eco24I	GRGCYC	1 cut(s)	576
Eco47I	GGWCC	2 cut(s)	247, 842
Eco53kI	GAGCTC	1 cut(s)	574
EcoICRI	GAGCTC	1 cut(s)	574
EcoO109I	RGGNCCY	2 cut(s)	247, 842
EcoRII	CCWGG	1 cut(s)	838
EcoT14I	CCWWGG	2 cut(s)	150, 881
EcoT38I	GRGCYC	1 cut(s)	576
EgeI	GGCGCC	2 cut(s)	24, 933
EheI	GGCGCC	2 cut(s)	24, 933
ErhI	CCWWGG	2 cut(s)	150, 881
FaeI	CATG	4 cut(s)	154, 527, 794, 885
FatI	CATG	4 cut(s)	150, 523, 790, 881
FblI	GTMKAC	1 cut(s)	662
Fnu4HI	GCNGC	2 cut(s)	49, 156
FokI	GGATG	4 cut(s)	467, 697, 755, 822
FriOI	GRGCYC	1 cut(s)	576
Fsp4HI	GCNGC	2 cut(s)	49, 156
GlaI	GCGC	2 cut(s)	24, 933
GluI	GCNGC	2 cut(s)	49, 156
GsaI	CCCAGC	1 cut(s)	722
GsuI	CTGGAG	1 cut(s)	495
HaeII	RGCGCY	2 cut(s)	26, 935
HaeIII	GGCC	1 cut(s)	767
HhaI	GCGC	2 cut(s)	25, 934
Hin1I	GRCGYC	2 cut(s)	23, 932
Hin1II	CATG	4 cut(s)	154, 527, 794, 885
Hin6I	GCGC	2 cut(s)	23, 932
HinP1I	GCGC	2 cut(s)	23, 932
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	8 cut(s)	12, 128, 224, 315, 343, 434, 566, 691
HphI	GGTGA	7 cut(s)	640, 652, 668, 815, 826, 950, 995
Hpy166II	GTNNAC	5 cut(s)	109, 163, 322, 663, 817
Hpy188III	TCNNGA	6 cut(s)	115, 356, 431, 495, 512, 974
Hpy8I	GTNNAC	5 cut(s)	109, 163, 322, 663, 817
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	5 cut(s)	211, 283, 288, 584, 691
HpyCH4III	ACNGT	1 cut(s)	821
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	7 cut(s)	93, 158, 463, 527, 825, 835, 859
HpyF3I	CTNAG	5 cut(s)	16, 220, 284, 388, 570
HpySE526I	ACGT	1 cut(s)	111
Hsp92I	GRCGYC	2 cut(s)	23, 932
Hsp92II	CATG	4 cut(s)	154, 527, 794, 885
HspAI	GCGC	2 cut(s)	23, 932
KasI	GGCGCC	2 cut(s)	22, 931
Kzo9I	GATC	3 cut(s)	919, 940, 976
LmnI	GCTCC	1 cut(s)	514
Lsp1109I	GCAGC	2 cut(s)	35, 142
LweI	GCATC	2 cut(s)	844, 991
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	803
MalI	GATC	3 cut(s)	921, 942, 978
MboI	GATC	3 cut(s)	919, 940, 976
MboII	GAAGA	8 cut(s)	85, 196, 330, 487, 719, 914, 962, 980
MhlI	GDGCHC	2 cut(s)	511, 576
MluCI	AATT	6 cut(s)	67, 228, 238, 529, 679, 1025
Mly113I	GGCGCC	2 cut(s)	23, 932
MlyI	GAGTC	3 cut(s)	309, 428, 560
MslI	CAYNNNNRTG	2 cut(s)	449, 864
MspR9I	CCNGG	1 cut(s)	840
Mva1269I	GAATGC	1 cut(s)	909
MvaI	CCWGG	1 cut(s)	840
MvnI	CGCG	2 cut(s)	116, 377
NarI	GGCGCC	2 cut(s)	23, 932
NcoI	CCATGG	2 cut(s)	150, 881
NdeII	GATC	3 cut(s)	919, 940, 976
NlaIII	CATG	4 cut(s)	154, 527, 794, 885
NlaIV	GGNNCC	4 cut(s)	24, 148, 785, 933
NmuCI	GTSAC	1 cut(s)	803
NruI	TCGCGA	1 cut(s)	116
PctI	GAATGC	1 cut(s)	909
PfeI	GAWTC	5 cut(s)	12, 128, 224, 343, 691
PkrI	GCNGC	2 cut(s)	50, 157
PleI	GAGTC	3 cut(s)	309, 428, 560
PluTI	GGCGCC	2 cut(s)	26, 935
PpsI	GAGTC	3 cut(s)	309, 428, 560
PpuMI	RGGWCCY	2 cut(s)	247, 842
Psp124BI	GAGCTC	1 cut(s)	576
Psp5II	RGGWCCY	2 cut(s)	247, 842
Psp6I	CCWGG	1 cut(s)	838
PspFI	CCCAGC	1 cut(s)	718
PspGI	CCWGG	1 cut(s)	838
PspN4I	GGNNCC	4 cut(s)	24, 148, 785, 933
PspPI	GGNCC	2 cut(s)	247, 842
PspPPI	RGGWCCY	2 cut(s)	247, 842
PstI	CTGCAG	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	845
RruI	TCGCGA	1 cut(s)	116
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	2 cut(s)	449, 864
SacI	GAGCTC	1 cut(s)	576
SatI	GCNGC	2 cut(s)	49, 156
Sau3AI	GATC	3 cut(s)	919, 940, 976
Sau96I	GGNCC	2 cut(s)	247, 842
ScaI	AGTACT	1 cut(s)	137
SchI	GAGTC	3 cut(s)	309, 428, 560
ScrFI	CCNGG	1 cut(s)	840
SduI	GDGCHC	2 cut(s)	511, 576
SfaNI	GCATC	2 cut(s)	844, 991
SfcI	CTRYAG	1 cut(s)	156
SfoI	GGCGCC	2 cut(s)	24, 933
SinI	GGWCC	2 cut(s)	247, 842
SmiMI	CAYNNNNRTG	2 cut(s)	449, 864
SmlI	CTYRAG	2 cut(s)	139, 173
SmoI	CTYRAG	2 cut(s)	139, 173
Sse9I	AATT	6 cut(s)	67, 228, 238, 529, 679, 1025
SspDI	GGCGCC	2 cut(s)	22, 931
SspI	AATATT	1 cut(s)	518
SstI	GAGCTC	1 cut(s)	576
StyD4I	CCNGG	1 cut(s)	838
StyI	CCWWGG	2 cut(s)	150, 881
TaaI	ACNGT	1 cut(s)	821
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	7 cut(s)	341, 346, 357, 402, 432, 494, 887
TasI	AATT	6 cut(s)	67, 228, 238, 529, 679, 1025
TatI	WGTACW	1 cut(s)	135
TfiI	GAWTC	5 cut(s)	12, 128, 224, 343, 691
TseFI	GTSAC	1 cut(s)	803
TseI	GCWGC	2 cut(s)	48, 155
Tsp45I	GTSAC	1 cut(s)	803
TspDTI	ATGAA	1 cut(s)	202
TspGWI	ACGGA	1 cut(s)	54
VpaK11BI	GGWCC	2 cut(s)	247, 842
XapI	RAATTY	2 cut(s)	67, 529
XcmI	CCANNNNNNNNNTGG	1 cut(s)	794
XmiI	GTMKAC	1 cut(s)	662
ZrmI	AGTACT	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.