pycom111g03210

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0015023
Physical Location & Seq
Reverse (-)
1937342 .. 1938478
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g03210.1

Sequence Viewer

Length: 1137 bp
ATGCTTCTCCTTAAACCCATTTCTCTCCTCCTCCTCCTCCTCCTCCTCTCCGCCGTCCCCATTCCCGCAAACGCAATCCGATCATTCCCGGACTCGCAAACCCGACCGGGAAATGAAAAACGATTCCACATGGATTTCTCAGAAGCTCCCAAATACACAAACGGAATCAGCTGCCCTGTTCTTCCGGGTGCAGCAAACGACGTCTGTGATTCCTCCCTCGTCCACGTCGCAATGACGATCGATTCCGAGTACTTGCGCGGCACCATTGCCGCTGTGCACTCTGTTTTCAAGCAAGCCTCCTGCCCGGAGAACACATTCTTCCACTTCGTCTCCTCGGATTCCGGCTCGGTTGATTCTCACCACCTCTCTCGCATTCTGACATCAACTTTTCCGGCGCTTAATTTCCGAGTTTATATCTTCAGAGAGAGTCTGGTGAACCATCTGATTTCTCCTTCGATTCGCCGAGCTCTGGAGAACCCATTGAACTACGCGAGGAGCTACTTGGCTGATTTGCTCGACCCCTGCGTCAAGCGAGTGATCTATCTCGACTCCGATGTCGTTGTCGTCGATGATATCCAGAAGTTATGGGGGATTTCCTTATCCGGGTCGAAAGTGATCGGAGCTCCGGAGTACTGCCACGCCAATTTCACCAAGTATTTCTCCGACGAGTTCTGGAGAGATTCCGAGCTCCCCAAGGCGTTCGATAAAAAACAACCGTGCTATTTCAACACCGGCGTGATGGTCATCGACTTGGTGAGATGGAGAACCGGAGGGTTCACGAGAAAGATCGAGAATTGGATGGAGATTCAGAAGGAGAAGAGGATTTACGAGCTGGGTTCTCTTCCGCCGTTTCTGCTGGTGTTCGGCGGCGACGTGGAGGCGATTCACCACCGGTGGAACCAGCACGGCCTCGGCGGCGATAATTTGATGAACAGCTGCAGGCCTCTGCATCCGGGTCCAGTGAGTTTGCTGCATTGGAGCGGGGGCGGGAAGCCATGGACGCGGCTGGATTTGGGAATGCCTTGCCCTGTCGATCTTCTCTGGGCCCCTTACGATCTCTACAAACACCACCAAAGTCACCTTCAAGATCTGCATCTTCTTCAACACGACCACCATCAACAATTTTTTATGTTGTAG

Protein Analysis

379

Amino Acids

42.92

Weight (kDa)

6.69

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 75 - 335 1.8e-54 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015023)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28340
fragaria_vesca FvH4_6g49810
malus_domestica MD17G1042500.v1.1
prunus_persica Prupe.3G276500_v2.0.a1
pyrus_communis pycom111g03210 pycom17g03810
rosa_chinensis RchiOBHm_Chr2g0169951
rosa_laevigata RLG00000021913
rosa_multiflora Rmu_co8421609.1_g000001
rosa_roxburghii Rroxscaffold_2G00081720
rosa_rugosa Rorug02G0544600
rosa_samantha Rh2AG616700 Rh2BG628500 Rh2CG597800 Rh2DG639500
rosa_wichuraiana Rw2G051080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 524, 554
AatII GACGTC 1 cut(s) 204
AccB1I GGYRCC 1 cut(s) 260
AccBSI CCGCTC 1 cut(s) 981
AccII CGCG 3 cut(s) 258, 491, 1003
AccIII TCCGGA 1 cut(s) 625
AcuI CTGAAG 1 cut(s) 403
AcyI GRCGYC 1 cut(s) 201
AfaI GTAC 2 cut(s) 251, 632
AfiI CCNNNNNNNGG 2 cut(s) 469, 603
AgeI ACCGGT 1 cut(s) 891
AgsI TTSAA 5 cut(s) 289, 484, 727, 1085, 1103
AjiI CACGTC 2 cut(s) 226, 874
AjuI GAANNNNNNNTTGG 2 cut(s) 1065, 1097
AleI CACNNNNGTG 1 cut(s) 734
AluBI AGCT 8 cut(s) 146, 171, 467, 498, 623, 688, 832, 936
AluI AGCT 8 cut(s) 146, 171, 467, 498, 623, 688, 832, 936
Alw21I GWGCWC 4 cut(s) 279, 469, 625, 690
Alw26I GTCTC 1 cut(s) 334
Alw44I GTGCAC 1 cut(s) 275
Aor13HI TCCGGA 1 cut(s) 625
AoxI GGCC 3 cut(s) 907, 941, 1044
ApaI GGGCCC 1 cut(s) 1048
ApaLI GTGCAC 1 cut(s) 275
ApeKI GCWGC 4 cut(s) 171, 191, 936, 970
AsiGI ACCGGT 1 cut(s) 891
Asp700I GAANNNNTTC 1 cut(s) 314
AspLEI GCGC 2 cut(s) 258, 397
AspS9I GGNCC 3 cut(s) 956, 1044, 1045
AsuC2I CCSGG 6 cut(s) 89, 108, 186, 305, 604, 954
AsuHPI GGTGA 6 cut(s) 350, 445, 640, 766, 878, 1070
AvaII GGWCC 1 cut(s) 956
BaeGI GKGCMC 2 cut(s) 279, 1048
BanI GGYRCC 1 cut(s) 260
BanII GRGCYC 4 cut(s) 469, 625, 690, 1048
BarI GAAGNNNNNNTAC 2 cut(s) 809, 841
BauI CACGAG 1 cut(s) 778
Bbv12I GWGCWC 4 cut(s) 279, 469, 625, 690
BbvI GCAGC 4 cut(s) 158, 203, 923, 957
BccI CCATC 5 cut(s) 447, 733, 753, 793, 1122
BceAI ACGGC 3 cut(s) 38, 832, 922
BcnI CCSGG 6 cut(s) 89, 108, 186, 305, 604, 954
BcoDI GTCTC 1 cut(s) 334
BfmI CTRYAG 1 cut(s) 937
BfoI RGCGCY 1 cut(s) 398
BglI GCCNNNNNGGC 1 cut(s) 915
BglII AGATCT 1 cut(s) 1087
BisI GCNGC 9 cut(s) 172, 192, 259, 270, 868, 916, 937, 971, 1004
BlsI GCNGC 9 cut(s) 173, 193, 260, 271, 869, 917, 938, 972, 1005
BmcAI AGTACT 2 cut(s) 251, 632
Bme1390I CCNGG 6 cut(s) 89, 108, 186, 305, 604, 954
Bme18I GGWCC 1 cut(s) 956
BmgBI CACGTC 2 cut(s) 226, 874
BmgT120I GGNCC 3 cut(s) 956, 1044, 1045
BmiI GGNNCC 5 cut(s) 262, 899, 957, 1046, 1047
BmrFI CCNGG 6 cut(s) 89, 108, 186, 305, 604, 954
BmsI GCATC 2 cut(s) 958, 1102
BpmI CTGGAG 2 cut(s) 491, 694
BpuMI CCSGG 6 cut(s) 89, 108, 186, 305, 604, 954
Bsa29I ATCGAT 1 cut(s) 240
BsaBI GATNNNNATC 2 cut(s) 743, 1092
BsaHI GRCGYC 1 cut(s) 201
BsaJI CCNNGG 4 cut(s) 333, 693, 910, 995
BsaWI WCCGGW 3 cut(s) 625, 767, 891
BsaXI ACNNNNNCTCC 2 cut(s) 314, 344
Bsc4I CCNNNNNNNGG 2 cut(s) 469, 603
Bse118I RCCGGY 2 cut(s) 731, 891
Bse1I ACTGG 1 cut(s) 959
Bse3DI GCAATG 2 cut(s) 237, 264
Bse8I GATNNNNATC 2 cut(s) 743, 1092
BseAI TCCGGA 1 cut(s) 625
BseCI ATCGAT 1 cut(s) 240
BseDI CCNNGG 4 cut(s) 333, 693, 910, 995
BseGI GGATG 2 cut(s) 804, 949
BseJI GATNNNNATC 2 cut(s) 743, 1092
BseLI CCNNNNNNNGG 2 cut(s) 469, 603
BseMI GCAATG 2 cut(s) 237, 264
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 959
BseRI GAGGAG 9 cut(s) 17, 20, 23, 26, 29, 32, 35, 322, 508
BseSI GKGCMC 2 cut(s) 279, 1048
BseXI GCAGC 4 cut(s) 158, 203, 923, 957
BseYI CCCAGC 1 cut(s) 832
BsgI GTGCAG 1 cut(s) 210
Bsh1236I CGCG 3 cut(s) 258, 491, 1003
Bsh1285I CGRYCG 2 cut(s) 107, 240
BshFI GGCC 3 cut(s) 909, 943, 1046
BshNI GGYRCC 1 cut(s) 260
BshTI ACCGGT 1 cut(s) 891
BshVI ATCGAT 1 cut(s) 240
BsiEI CGRYCG 2 cut(s) 107, 240
BsiHKAI GWGCWC 4 cut(s) 279, 469, 625, 690
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 2 cut(s) 469, 603
BsmAI GTCTC 1 cut(s) 334
BsmBI CGTCTC 1 cut(s) 334
BsmFI GGGAC 1 cut(s) 41
BsmI GAATGC 2 cut(s) 372, 1023
BsnI GGCC 3 cut(s) 909, 943, 1046
Bsp120I GGGCCC 1 cut(s) 1044
Bsp1286I GDGCHC 5 cut(s) 279, 469, 625, 690, 1048
Bsp13I TCCGGA 1 cut(s) 625
Bsp143I GATC 8 cut(s) 80, 237, 537, 615, 786, 1033, 1054, 1087
Bsp19I CCATGG 1 cut(s) 995
BspANI GGCC 3 cut(s) 909, 943, 1046
BspCNI CTCAG 1 cut(s) 152
BspDI ATCGAT 1 cut(s) 240
BspEI TCCGGA 1 cut(s) 625
BspFNI CGCG 3 cut(s) 258, 491, 1003
BspLI GGNNCC 5 cut(s) 262, 899, 957, 1046, 1047
BspMAI CTGCAG 1 cut(s) 941
BspT107I GGYRCC 1 cut(s) 260
BsrBI CCGCTC 1 cut(s) 981
BsrDI GCAATG 2 cut(s) 237, 264
BsrFI RCCGGY 2 cut(s) 731, 891
BsrI ACTGG 1 cut(s) 959
BssAI RCCGGY 2 cut(s) 731, 891
BssECI CCNNGG 4 cut(s) 333, 693, 910, 995
BssMI GATC 8 cut(s) 80, 237, 537, 615, 786, 1033, 1054, 1087
BssNI GRCGYC 1 cut(s) 201
BssSI CACGAG 1 cut(s) 778
BssT1I CCWWGG 2 cut(s) 693, 995
Bst2BI CACGAG 1 cut(s) 778
Bst4CI ACNGT 1 cut(s) 717
Bst6I CTCTTC 2 cut(s) 812, 846
BstACI GRCGYC 1 cut(s) 201
BstC8I GCNNGC 2 cut(s) 294, 941
BstDEI CTNAG 1 cut(s) 139
BstDSI CCRYGG 1 cut(s) 995
BstF5I GGATG 2 cut(s) 804, 949
BstFNI CGCG 3 cut(s) 258, 491, 1003
BstH2I RGCGCY 1 cut(s) 398
BstHHI GCGC 2 cut(s) 258, 397
BstKTI GATC 8 cut(s) 83, 240, 540, 618, 789, 1036, 1057, 1090
BstMAI GTCTC 1 cut(s) 334
BstMBI GATC 8 cut(s) 80, 237, 537, 615, 786, 1033, 1054, 1087
BstMCI CGRYCG 2 cut(s) 107, 240
BstMWI GCNNNNNNNGC 3 cut(s) 853, 915, 1000
BstSCI CCNGG 6 cut(s) 87, 106, 184, 303, 602, 952
BstSFI CTRYAG 1 cut(s) 937
BstSLI GKGCMC 2 cut(s) 279, 1048
BstUI CGCG 3 cut(s) 258, 491, 1003
BstV1I GCAGC 4 cut(s) 158, 203, 923, 957
BstX2I RGATCY 1 cut(s) 1087
BstYI RGATCY 1 cut(s) 1087
Bsu15I ATCGAT 1 cut(s) 240
BsuRI GGCC 3 cut(s) 909, 943, 1046
BsuTUI ATCGAT 1 cut(s) 240
BtgI CCRYGG 1 cut(s) 995
BtrI CACGTC 2 cut(s) 226, 874
BtsCI GGATG 2 cut(s) 804, 949
BtsIMutI CAGTG 1 cut(s) 966
Cac8I GCNNGC 2 cut(s) 294, 941
CfoI GCGC 2 cut(s) 258, 397
Cfr10I RCCGGY 2 cut(s) 731, 891
Cfr13I GGNCC 3 cut(s) 956, 1044, 1045
ClaI ATCGAT 1 cut(s) 240
CseI GACGC 2 cut(s) 514, 1009
Csp6I GTAC 2 cut(s) 250, 631
CspAI ACCGGT 1 cut(s) 891
CviAII CATG 2 cut(s) 130, 996
CviQI GTAC 2 cut(s) 250, 631
DdeI CTNAG 1 cut(s) 139
DpnI GATC 8 cut(s) 82, 239, 539, 617, 788, 1035, 1056, 1089
DpnII GATC 8 cut(s) 80, 237, 537, 615, 786, 1033, 1054, 1087
DrdI GACNNNNNNGTC 2 cut(s) 524, 554
DseDI GACNNNNNNGTC 2 cut(s) 524, 554
Eam1104I CTCTTC 2 cut(s) 812, 846
EarI CTCTTC 2 cut(s) 812, 846
EciI GGCGGA 2 cut(s) 40, 834
Ecl136II GAGCTC 3 cut(s) 467, 623, 688
Eco130I CCWWGG 2 cut(s) 693, 995
Eco147I AGGCCT 1 cut(s) 943
Eco24I GRGCYC 4 cut(s) 469, 625, 690, 1048
Eco32I GATATC 1 cut(s) 574
Eco47I GGWCC 1 cut(s) 956
Eco53kI GAGCTC 3 cut(s) 467, 623, 688
Eco57I CTGAAG 1 cut(s) 403
EcoICRI GAGCTC 3 cut(s) 467, 623, 688
EcoO109I RGGNCCY 1 cut(s) 1045
EcoRV GATATC 1 cut(s) 574
EcoT14I CCWWGG 2 cut(s) 693, 995
EcoT38I GRGCYC 4 cut(s) 469, 625, 690, 1048
ErhI CCWWGG 2 cut(s) 693, 995
Esp3I CGTCTC 1 cut(s) 334
FaeI CATG 2 cut(s) 133, 999
FaiI YATR 5 cut(s) 131, 414, 586, 997, 1130
FaqI GGGAC 1 cut(s) 41
FatI CATG 2 cut(s) 129, 995
FauI CCCGC 3 cut(s) 73, 974, 980
Fnu4HI GCNGC 9 cut(s) 172, 192, 259, 270, 868, 916, 937, 971, 1004
FokI GGATG 2 cut(s) 811, 936
FriOI GRGCYC 4 cut(s) 469, 625, 690, 1048
Fsp4HI GCNGC 9 cut(s) 172, 192, 259, 270, 868, 916, 937, 971, 1004
GlaI GCGC 2 cut(s) 257, 396
GluI GCNGC 9 cut(s) 172, 192, 259, 270, 868, 916, 937, 971, 1004
GsaI CCCAGC 1 cut(s) 836
GsuI CTGGAG 2 cut(s) 491, 694
HaeII RGCGCY 1 cut(s) 398
HaeIII GGCC 3 cut(s) 909, 943, 1046
HgaI GACGC 2 cut(s) 514, 1009
HhaI GCGC 2 cut(s) 258, 397
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 2 cut(s) 133, 999
Hin6I GCGC 2 cut(s) 256, 395
HinP1I GCGC 2 cut(s) 256, 395
HphI GGTGA 6 cut(s) 350, 445, 640, 766, 878, 1070
Hpy166II GTNNAC 4 cut(s) 223, 277, 436, 777
Hpy188III TCNNGA 8 cut(s) 470, 545, 577, 626, 673, 778, 790, 1085
Hpy8I GTNNAC 4 cut(s) 223, 277, 436, 777
Hpy99I CGWCG 5 cut(s) 203, 230, 569, 668, 875
HpyAV CCTTC 3 cut(s) 462, 805, 1091
HpyCH4III ACNGT 1 cut(s) 717
HpyCH4IV ACGT 3 cut(s) 201, 225, 873
HpyCH4V TGCA 6 cut(s) 191, 277, 939, 949, 973, 1093
HpyF10VI GCNNNNNNNGC 3 cut(s) 853, 915, 1000
HpyF3I CTNAG 1 cut(s) 139
HpySE526I ACGT 3 cut(s) 201, 225, 873
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 2 cut(s) 133, 999
HspAI GCGC 2 cut(s) 256, 395
Kpn2I TCCGGA 1 cut(s) 625
Kzo9I GATC 8 cut(s) 80, 237, 537, 615, 786, 1033, 1054, 1087
LmnI GCTCC 6 cut(s) 151, 495, 620, 628, 693, 978
Lsp1109I GCAGC 4 cut(s) 158, 203, 923, 957
LweI GCATC 2 cut(s) 958, 1102
MaeII ACGT 3 cut(s) 201, 225, 873
MaeIII GTNAC 1 cut(s) 1076
MalI GATC 8 cut(s) 82, 239, 539, 617, 788, 1035, 1056, 1089
MbiI CCGCTC 1 cut(s) 981
MboI GATC 8 cut(s) 80, 237, 537, 615, 786, 1033, 1054, 1087
MboII GAAGA 8 cut(s) 173, 310, 409, 829, 833, 1028, 1088, 1091
MflI RGATCY 1 cut(s) 1087
MhlI GDGCHC 5 cut(s) 279, 469, 625, 690, 1048
MluCI AATT 5 cut(s) 400, 643, 793, 922, 1121
MlyI GAGTC 3 cut(s) 86, 436, 542
MmeI TCCRAC 1 cut(s) 687
MroI TCCGGA 1 cut(s) 625
MroXI GAANNNNTTC 1 cut(s) 314
MseI TTAA 2 cut(s) 12, 399
MslI CAYNNNNRTG 1 cut(s) 734
MspA1I CMGCKG 3 cut(s) 171, 272, 936
MspR9I CCNGG 6 cut(s) 89, 108, 186, 305, 604, 954
Mva1269I GAATGC 2 cut(s) 372, 1023
MvnI CGCG 3 cut(s) 258, 491, 1003
MwoI GCNNNNNNNGC 3 cut(s) 853, 915, 1000
NciI CCSGG 6 cut(s) 89, 108, 186, 305, 604, 954
NcoI CCATGG 1 cut(s) 995
NdeII GATC 8 cut(s) 80, 237, 537, 615, 786, 1033, 1054, 1087
NlaIII CATG 2 cut(s) 133, 999
NlaIV GGNNCC 5 cut(s) 262, 899, 957, 1046, 1047
NmeAIII GCCGAG 2 cut(s) 488, 891
NmuCI GTSAC 1 cut(s) 1076
OliI CACNNNNGTG 1 cut(s) 734
PceI AGGCCT 1 cut(s) 943
PcsI WCGNNNNNNNCGW 3 cut(s) 522, 564, 870
PctI GAATGC 2 cut(s) 372, 1023
PdmI GAANNNNTTC 1 cut(s) 314
PfoI TCCNGGA 1 cut(s) 87
PinAI ACCGGT 1 cut(s) 891
PkrI GCNGC 9 cut(s) 173, 193, 260, 271, 869, 917, 938, 972, 1005
Ple19I CGATCG 1 cut(s) 240
PleI GAGTC 3 cut(s) 86, 435, 542
PpsI GAGTC 3 cut(s) 86, 435, 542
Psp124BI GAGCTC 3 cut(s) 469, 625, 690
PspFI CCCAGC 1 cut(s) 832
PspN4I GGNNCC 5 cut(s) 262, 899, 957, 1046, 1047
PspOMI GGGCCC 1 cut(s) 1044
PspPI GGNCC 3 cut(s) 956, 1044, 1045
PstI CTGCAG 1 cut(s) 941
PsuI RGATCY 1 cut(s) 1087
PvuI CGATCG 1 cut(s) 240
PvuII CAGCTG 2 cut(s) 171, 936
RsaI GTAC 2 cut(s) 251, 632
RsaNI GTAC 2 cut(s) 250, 631
RseI CAYNNNNRTG 1 cut(s) 734
SacI GAGCTC 3 cut(s) 469, 625, 690
SaqAI TTAA 2 cut(s) 12, 399
SatI GCNGC 9 cut(s) 172, 192, 259, 270, 868, 916, 937, 971, 1004
Sau3AI GATC 8 cut(s) 80, 237, 537, 615, 786, 1033, 1054, 1087
Sau96I GGNCC 3 cut(s) 956, 1044, 1045
ScaI AGTACT 2 cut(s) 251, 632
SchI GAGTC 3 cut(s) 86, 436, 542
ScrFI CCNGG 6 cut(s) 89, 108, 186, 305, 604, 954
SduI GDGCHC 5 cut(s) 279, 469, 625, 690, 1048
SfaNI GCATC 2 cut(s) 958, 1102
SfcI CTRYAG 1 cut(s) 937
SgrAI CRCCGGYG 2 cut(s) 731, 891
SinI GGWCC 1 cut(s) 956
SmiMI CAYNNNNRTG 1 cut(s) 734
Sse9I AATT 5 cut(s) 400, 643, 793, 922, 1121
SseBI AGGCCT 1 cut(s) 943
SstI GAGCTC 3 cut(s) 469, 625, 690
StuI AGGCCT 1 cut(s) 943
StyD4I CCNGG 6 cut(s) 87, 106, 184, 303, 602, 952
StyI CCWWGG 2 cut(s) 693, 995
TaaI ACNGT 1 cut(s) 717
TaiI ACGT 3 cut(s) 204, 228, 876
TasI AATT 5 cut(s) 400, 643, 793, 922, 1121
TatI WGTACW 2 cut(s) 249, 630
TauI GCSGC 5 cut(s) 261, 272, 870, 918, 1006
Tru1I TTAA 2 cut(s) 12, 399
Tru9I TTAA 2 cut(s) 12, 399
TscAI CASTG 1 cut(s) 966
TseFI GTSAC 1 cut(s) 1076
TseI GCWGC 4 cut(s) 171, 191, 936, 970
Tsp45I GTSAC 1 cut(s) 1076
TspDTI ATGAA 2 cut(s) 129, 944
TspGWI ACGGA 1 cut(s) 177
TspRI CASTG 1 cut(s) 966
VneI GTGCAC 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 956
XmnI GAANNNNTTC 1 cut(s) 314
ZraI GACGTC 1 cut(s) 202
ZrmI AGTACT 2 cut(s) 251, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.