Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015023

Physical Location & Seq

Genomic Coordinates Forward (+)

37242277 .. 37243893

Gene Structure 1617 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g49810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGTTTTCAAGAACCATCTTCTTGGTTCTCTTCTTCTTTCTTCTTTCTTTAATCACCTTTACTCCTGCAAATGCAATCCGATCGTTTCCAGAAAGAGTTGGGATTTCGTTCTTGCAACAATTCTCTGAAGCCCCGGAATACAAAAACGGATTCAGCTGCCGTGTTTTGGGTGTCGGGAACTTTCCGGCGGCGTGTGATCCTTCTCTTGTTCATGTTGCAATGACTATTGATTCTGAGTACTTGAGAGGCACCATAGCTGCAGTCCACTCTGTTCTCAAGCACGCTTCTTGCCCTCAAAACACTTTCTTCCACTTCATCGCTTCAGATTCTAGTCCGGTGAGTTCCCAAGACCTTACTCGAGTTGTGCACTCCACGTTTCCGTCGCTCAGGTTCAGAGTTTATCAGTTCAAGGAGAGCATAGTCAGTCATCTGATCTCGTCTTCCATTCGTCAAGCTCTTGATAACCCCTTGAACTACGCAAGAAGCTACTTAGCGGATTTGCTAGACGCTTGTGTGGAGCGTGTGATCTATTTAGACTCGGATGTTATCGTTGTCGATGATGTAGAGAAGCTGTGGAGGATAAAGTTGTCAGGGTCCAGAGTTATTGGTGCTCCGGAGTATTGTCACGCGAATTTCACCAAGTACTTTTCGGATGGATTTTGGGAAGATAGTGAAATGTCCAAGGTTTTTGAAGGGAAGAGTGCTTGTTATTTCAATACAGGTGTGATGGTGATGGACTTGGTGAGGTGGAGAGAGGGTGATTATACGAGGAAGATTGAGAGTTGGATGGAGATTCAGAAGGAGAAGAGGATTTACGAGCTGGGATCTCTACCGCCTTTTTTGTTGGTTTTCGGTGGAGATGTTGAGGCTATTCATCACAGATGGAACCAACATGGGCTTGGTGGTGATAATGTGGTGAATAGTTGCAGGTCTCTGCATCCAGGTCCTGTGAGCTTGTTGCATTGGAGTGGGAAAGGGAAGCCATGGTCAAGGCTTGATTTGGGGAAGCCTTGCCTGGTTGATTATCTTTGGGCGCCTTATGATCTCTACATACACCATCATCATCATCACCATCACCATCATGAACAGCTATTGGCAGTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0047262 GO:0050896 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

369

Amino Acids

42.03

Weight (kDa)

6.61

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	71 - 331	4.2e-55	Glycosyl transferase family 8
Glyco_transf_24	PF18404	159 - 254	3.9e-06	Glucosyltransferase 24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28340
fragaria_vesca	FvH4_6g49810
malus_domestica	MD17G1042500.v1.1
prunus_persica	Prupe.3G276500_v2.0.a1
pyrus_communis	pycom111g03210 pycom17g03810
rosa_chinensis	RchiOBHm_Chr2g0169951
rosa_laevigata	RLG00000021913
rosa_multiflora	Rmu_co8421609.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081720
rosa_rugosa	Rorug02G0544600
rosa_samantha	Rh2AG616700 Rh2BG628500 Rh2CG597800 Rh2DG639500
rosa_wichuraiana	Rw2G051080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	918
AccB1I	GGYRCC	2 cut(s)	248, 1033
AccII	CGCG	1 cut(s)	629
AccIII	TCCGGA	1 cut(s)	613
AciI	CCGC	3 cut(s)	188, 494, 833
AclWI	GGATC	2 cut(s)	191, 832
AcsI	RAATTY	1 cut(s)	631
AcuI	CTGAAG	2 cut(s)	147, 306
AcyI	GRCGYC	1 cut(s)	1034
AfaI	GTAC	2 cut(s)	239, 644
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	5 cut(s)	9, 409, 472, 692, 715
AjnI	CCWGG	2 cut(s)	940, 1014
AluBI	AGCT	8 cut(s)	156, 257, 455, 486, 571, 820, 954, 1090
AluI	AGCT	8 cut(s)	156, 257, 455, 486, 571, 820, 954, 1090
Alw21I	GWGCWC	2 cut(s)	369, 613
Alw26I	GTCTC	1 cut(s)	936
Alw44I	GTGCAC	1 cut(s)	365
AlwI	GGATC	2 cut(s)	191, 832
AlwNI	CAGNNNCTG	1 cut(s)	947
Ama87I	CYCGRG	1 cut(s)	357
Aor13HI	TCCGGA	1 cut(s)	613
ApaLI	GTGCAC	1 cut(s)	365
ApeKI	GCWGC	2 cut(s)	156, 257
ApoI	RAATTY	1 cut(s)	631
AspLEI	GCGC	1 cut(s)	1036
AspS9I	GGNCC	2 cut(s)	594, 944
AsuC2I	CCSGG	1 cut(s)	134
AvaI	CYCGRG	1 cut(s)	357
AvaII	GGWCC	2 cut(s)	594, 944
BaeGI	GKGCMC	1 cut(s)	369
BanI	GGYRCC	2 cut(s)	248, 1033
BarI	GAAGNNNNNNTAC	2 cut(s)	797, 829
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	2 cut(s)	369, 613
BbvI	GCAGC	2 cut(s)	143, 244
BccI	CCATC	9 cut(s)	23, 647, 721, 727, 781, 876, 1065, 1080, 1086
BceAI	ACGGC	1 cut(s)	144
BcgI	CGANNNNNNTGC	2 cut(s)	63, 97
BciT130I	CCWGG	2 cut(s)	942, 1016
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	936
BfaI	CTAG	2 cut(s)	330, 503
BfmI	CTRYAG	1 cut(s)	258
BfoI	RGCGCY	1 cut(s)	1037
BfuAI	ACCTGC	1 cut(s)	918
BisI	GCNGC	3 cut(s)	157, 189, 258
BlsI	GCNGC	3 cut(s)	158, 190, 259
BmcAI	AGTACT	2 cut(s)	239, 644
Bme1390I	CCNGG	3 cut(s)	134, 942, 1016
Bme18I	GGWCC	2 cut(s)	594, 944
BmeT110I	CYCGRG	1 cut(s)	357
BmgT120I	GGNCC	2 cut(s)	594, 944
BmiI	GGNNCC	4 cut(s)	250, 595, 887, 1035
BmrFI	CCNGG	3 cut(s)	134, 942, 1016
BmsI	GCATC	1 cut(s)	946
BpiI	GAAGAC	1 cut(s)	432
Bpu10I	CCTNAGC	1 cut(s)	386
BpuEI	CTTGAG	2 cut(s)	260, 262
BpuMI	CCSGG	1 cut(s)	134
BsaHI	GRCGYC	1 cut(s)	1034
BsaI	GGTCTC	1 cut(s)	936
BsaJI	CCNNGG	3 cut(s)	132, 681, 983
BsaWI	WCCGGW	2 cut(s)	334, 613
BsaXI	ACNNNNNCTCC	4 cut(s)	46, 76, 742, 772
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse3DI	GCAATG	1 cut(s)	225
BseAI	TCCGGA	1 cut(s)	613
BseBI	CCWGG	2 cut(s)	942, 1016
BseDI	CCNNGG	3 cut(s)	132, 681, 983
BseGI	GGATG	4 cut(s)	547, 658, 792, 937
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	2 cut(s)	225, 400
BseSI	GKGCMC	1 cut(s)	369
BseXI	GCAGC	2 cut(s)	143, 244
BseYI	CCCAGC	1 cut(s)	820
Bsh1236I	CGCG	1 cut(s)	629
Bsh1285I	CGRYCG	1 cut(s)	83
BshNI	GGYRCC	2 cut(s)	248, 1033
BsiEI	CGRYCG	1 cut(s)	83
BsiHKAI	GWGCWC	2 cut(s)	369, 613
BsiHKCI	CYCGRG	1 cut(s)	357
BsiSI	CCGG	4 cut(s)	134, 185, 335, 614
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	936
Bso31I	GGTCTC	1 cut(s)	936
BsoBI	CYCGRG	1 cut(s)	357
Bsp1286I	GDGCHC	2 cut(s)	369, 613
Bsp13I	TCCGGA	1 cut(s)	613
Bsp143I	GATC	6 cut(s)	80, 196, 432, 525, 824, 1042
Bsp19I	CCATGG	1 cut(s)	983
BspACI	CCGC	3 cut(s)	188, 494, 833
BspCNI	CTCAG	2 cut(s)	226, 399
BspEI	TCCGGA	1 cut(s)	613
BspFNI	CGCG	1 cut(s)	629
BspHI	TCATGA	1 cut(s)	1081
BspLI	GGNNCC	4 cut(s)	250, 595, 887, 1035
BspMAI	CTGCAG	1 cut(s)	262
BspMI	ACCTGC	1 cut(s)	918
BspPI	GGATC	2 cut(s)	191, 832
BspT107I	GGYRCC	2 cut(s)	248, 1033
BspTNI	GGTCTC	1 cut(s)	936
BsrDI	GCAATG	1 cut(s)	225
BssECI	CCNNGG	3 cut(s)	132, 681, 983
BssMI	GATC	6 cut(s)	80, 196, 432, 525, 824, 1042
BssNI	GRCGYC	1 cut(s)	1034
BssT1I	CCWWGG	2 cut(s)	681, 983
Bst2UI	CCWGG	2 cut(s)	942, 1016
Bst6I	CTCTTC	3 cut(s)	35, 692, 800
BstACI	GRCGYC	1 cut(s)	1034
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	3 cut(s)	234, 386, 490
BstDSI	CCRYGG	1 cut(s)	983
BstF5I	GGATG	4 cut(s)	547, 658, 792, 937
BstFNI	CGCG	1 cut(s)	629
BstH2I	RGCGCY	1 cut(s)	1037
BstHHI	GCGC	1 cut(s)	1036
BstKTI	GATC	6 cut(s)	83, 199, 435, 528, 827, 1045
BstMAI	GTCTC	1 cut(s)	936
BstMBI	GATC	6 cut(s)	80, 196, 432, 525, 824, 1042
BstMCI	CGRYCG	1 cut(s)	83
BstNI	CCWGG	2 cut(s)	942, 1016
BstSCI	CCNGG	3 cut(s)	132, 940, 1014
BstSFI	CTRYAG	1 cut(s)	258
BstSLI	GKGCMC	1 cut(s)	369
BstUI	CGCG	1 cut(s)	629
BstV1I	GCAGC	2 cut(s)	143, 244
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	1 cut(s)	824
BstXI	CCANNNNNNTGG	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	824
BtgI	CCRYGG	1 cut(s)	983
BtgZI	GCGATG	1 cut(s)	301
BtsCI	GGATG	4 cut(s)	547, 658, 792, 937
BveI	ACCTGC	1 cut(s)	918
Cac8I	GCNNGC	1 cut(s)	282
CaiI	CAGNNNCTG	1 cut(s)	947
CciI	TCATGA	1 cut(s)	1081
CfoI	GCGC	1 cut(s)	1036
Cfr13I	GGNCC	2 cut(s)	594, 944
CseI	GACGC	1 cut(s)	515
Csp6I	GTAC	2 cut(s)	238, 643
CviAII	CATG	4 cut(s)	212, 893, 984, 1082
CviQI	GTAC	2 cut(s)	238, 643
DdeI	CTNAG	3 cut(s)	234, 386, 490
DinI	GGCGCC	1 cut(s)	1035
DpnI	GATC	6 cut(s)	82, 198, 434, 527, 826, 1044
DpnII	GATC	6 cut(s)	80, 196, 432, 525, 824, 1042
Eam1104I	CTCTTC	3 cut(s)	35, 692, 800
EarI	CTCTTC	3 cut(s)	35, 692, 800
Eco130I	CCWWGG	2 cut(s)	681, 983
Eco31I	GGTCTC	1 cut(s)	936
Eco47I	GGWCC	2 cut(s)	594, 944
Eco57I	CTGAAG	2 cut(s)	147, 306
Eco88I	CYCGRG	1 cut(s)	357
EcoO109I	RGGNCCY	1 cut(s)	944
EcoRII	CCWGG	2 cut(s)	940, 1014
EcoT14I	CCWWGG	2 cut(s)	681, 983
EgeI	GGCGCC	1 cut(s)	1035
EheI	GGCGCC	1 cut(s)	1035
ErhI	CCWWGG	2 cut(s)	681, 983
FaeI	CATG	4 cut(s)	215, 896, 987, 1085
FaiI	YATR	9 cut(s)	213, 254, 419, 765, 894, 985, 1041, 1052, 1083
FatI	CATG	4 cut(s)	211, 892, 983, 1081
Fnu4HI	GCNGC	3 cut(s)	157, 189, 258
FokI	GGATG	4 cut(s)	554, 665, 799, 924
Fsp4HI	GCNGC	3 cut(s)	157, 189, 258
FspBI	CTAG	2 cut(s)	330, 503
GlaI	GCGC	1 cut(s)	1035
GluI	GCNGC	3 cut(s)	157, 189, 258
GsaI	CCCAGC	1 cut(s)	824
HaeII	RGCGCY	1 cut(s)	1037
HapII	CCGG	4 cut(s)	134, 185, 335, 614
HgaI	GACGC	1 cut(s)	515
HhaI	GCGC	1 cut(s)	1036
Hin1I	GRCGYC	1 cut(s)	1034
Hin1II	CATG	4 cut(s)	215, 896, 987, 1085
Hin6I	GCGC	1 cut(s)	1034
HinP1I	GCGC	1 cut(s)	1034
HinfI	GANTC	5 cut(s)	150, 230, 326, 536, 793
HpaII	CCGG	4 cut(s)	134, 185, 335, 614
Hpy166II	GTNNAC	2 cut(s)	265, 367
Hpy188I	TCNGA	9 cut(s)	80, 127, 235, 325, 395, 432, 541, 652, 798
Hpy188III	TCNNGA	7 cut(s)	9, 89, 175, 458, 597, 614, 1082
Hpy8I	GTNNAC	2 cut(s)	265, 367
Hpy99I	CGWCG	1 cut(s)	385
HpyAV	CCTTC	3 cut(s)	210, 686, 793
HpyCH4IV	ACGT	1 cut(s)	374
HpyCH4V	TGCA	9 cut(s)	68, 74, 115, 218, 260, 367, 927, 937, 961
HpyF3I	CTNAG	3 cut(s)	234, 386, 490
HpySE526I	ACGT	1 cut(s)	374
Hsp92I	GRCGYC	1 cut(s)	1034
Hsp92II	CATG	4 cut(s)	215, 896, 987, 1085
HspAI	GCGC	1 cut(s)	1034
KasI	GGCGCC	1 cut(s)	1033
Kpn2I	TCCGGA	1 cut(s)	613
Kzo9I	GATC	6 cut(s)	80, 196, 432, 525, 824, 1042
LmnI	GCTCC	2 cut(s)	517, 616
Lsp1109I	GCAGC	2 cut(s)	143, 244
LweI	GCATC	1 cut(s)	946
MaeI	CTAG	2 cut(s)	330, 503
MaeII	ACGT	1 cut(s)	374
MaeIII	GTNAC	1 cut(s)	623
MalI	GATC	6 cut(s)	82, 198, 434, 527, 826, 1044
MboI	GATC	6 cut(s)	80, 196, 432, 525, 824, 1042
MflI	RGATCY	1 cut(s)	824
MhlI	GDGCHC	2 cut(s)	369, 613
MluCI	AATT	2 cut(s)	119, 631
Mly113I	GGCGCC	1 cut(s)	1034
MlyI	GAGTC	1 cut(s)	530
MmeI	TCCRAC	1 cut(s)	764
MnlI	CCTC	8 cut(s)	239, 303, 570, 738, 748, 762, 801, 859
MroI	TCCGGA	1 cut(s)	613
MseI	TTAA	1 cut(s)	50
MslI	CAYNNNNRTG	2 cut(s)	966, 1080
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	4 cut(s)	134, 185, 335, 614
MspR9I	CCNGG	3 cut(s)	134, 942, 1016
MvaI	CCWGG	2 cut(s)	942, 1016
MvnI	CGCG	1 cut(s)	629
NarI	GGCGCC	1 cut(s)	1034
NciI	CCSGG	1 cut(s)	134
NcoI	CCATGG	1 cut(s)	983
NdeII	GATC	6 cut(s)	80, 196, 432, 525, 824, 1042
NlaIII	CATG	4 cut(s)	215, 896, 987, 1085
NlaIV	GGNNCC	4 cut(s)	250, 595, 887, 1035
NmuCI	GTSAC	1 cut(s)	623
PaeR7I	CTCGAG	1 cut(s)	357
PagI	TCATGA	1 cut(s)	1081
PfeI	GAWTC	4 cut(s)	150, 230, 326, 793
PkrI	GCNGC	3 cut(s)	158, 190, 259
Ple19I	CGATCG	1 cut(s)	83
PleI	GAGTC	1 cut(s)	530
PluTI	GGCGCC	1 cut(s)	1037
PpsI	GAGTC	1 cut(s)	530
PpuMI	RGGWCCY	1 cut(s)	944
Psp5II	RGGWCCY	1 cut(s)	944
Psp6I	CCWGG	2 cut(s)	940, 1014
PspFI	CCCAGC	1 cut(s)	820
PspGI	CCWGG	2 cut(s)	940, 1014
PspN4I	GGNNCC	4 cut(s)	250, 595, 887, 1035
PspPI	GGNCC	2 cut(s)	594, 944
PspPPI	RGGWCCY	1 cut(s)	944
PspXI	VCTCGAGB	1 cut(s)	357
PstI	CTGCAG	1 cut(s)	262
PstNI	CAGNNNCTG	1 cut(s)	947
PsuI	RGATCY	1 cut(s)	824
PvuI	CGATCG	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	156
RsaI	GTAC	2 cut(s)	239, 644
RsaNI	GTAC	2 cut(s)	238, 643
RseI	CAYNNNNRTG	2 cut(s)	966, 1080
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	3 cut(s)	157, 189, 258
Sau3AI	GATC	6 cut(s)	80, 196, 432, 525, 824, 1042
Sau96I	GGNCC	2 cut(s)	594, 944
ScaI	AGTACT	2 cut(s)	239, 644
SchI	GAGTC	1 cut(s)	530
ScrFI	CCNGG	3 cut(s)	134, 942, 1016
SduI	GDGCHC	2 cut(s)	369, 613
SfaNI	GCATC	1 cut(s)	946
SfcI	CTRYAG	1 cut(s)	258
SfoI	GGCGCC	1 cut(s)	1035
Sfr274I	CTCGAG	1 cut(s)	357
SinI	GGWCC	2 cut(s)	594, 944
SlaI	CTCGAG	1 cut(s)	357
SmiMI	CAYNNNNRTG	2 cut(s)	966, 1080
SmlI	CTYRAG	3 cut(s)	241, 275, 357
SmoI	CTYRAG	3 cut(s)	241, 275, 357
Sse9I	AATT	2 cut(s)	119, 631
SsiI	CCGC	3 cut(s)	188, 494, 833
SspDI	GGCGCC	1 cut(s)	1033
SspMI	CTAG	2 cut(s)	330, 503
StyD4I	CCNGG	3 cut(s)	132, 940, 1014
StyI	CCWWGG	2 cut(s)	681, 983
TaiI	ACGT	1 cut(s)	377
TaqI	TCGA	2 cut(s)	358, 555
TasI	AATT	2 cut(s)	119, 631
TatI	WGTACW	2 cut(s)	237, 642
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	4 cut(s)	150, 230, 326, 793
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TseFI	GTSAC	1 cut(s)	623
TseI	GCWGC	2 cut(s)	156, 257
Tsp45I	GTSAC	1 cut(s)	623
TspDTI	ATGAA	4 cut(s)	200, 304, 863, 1098
TspGWI	ACGGA	2 cut(s)	162, 369
VneI	GTGCAC	1 cut(s)	365
VpaK11BI	GGWCC	2 cut(s)	594, 944
XapI	RAATTY	1 cut(s)	631
XcmI	CCANNNNNNNNNTGG	1 cut(s)	896
XhoI	CTCGAG	1 cut(s)	357
XspI	CTAG	2 cut(s)	330, 503
ZrmI	AGTACT	2 cut(s)	239, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.