Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0015023

Physical Location & Seq

Genomic Coordinates Forward (+)

77359217 .. 77360335

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG597800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGTTTCAAAGAACCATCTTCTTGGTTCTCTTCTTCTTGCTCGCTTCTTTGATCACCATTAATCCCACACATGCAATCCGATCATTCCCGGAAAGAGTAGGGTTTTCCATCTCGCACCAATTCTCGGAGGCTCCCGAGTACACCAATGGATTCAGCTGCCCTGTTTTGGGTGGAGACAGCTTTCCAAAGACGTGTGATCCCTCTCTTGTTCATATTGCAATGACTATTGATTCCGAGTACTTGAGAGGCACCATAGCTGCAGTCCACTCTGTTCTCAAGCACGCTTCTTGCCCTGAAAACACTTTCTTCCACTTCATCGCCTCGGATTCCAGTCCGGTGAGTTCCGAAGACCTTGCTCGAGTTGTCCGCTCCACGTTTCCTTCTCTCAGTTTCAGAGTTTATCAGTTCAAGGAGAGCCTAGTCCGTCATCTGATTTCATCTTCCATTCGTCAAGCTCTTGATAACCCCTTGAACTACGCAAGAAGCTACTTAGCCGATTTGCTGGACTCCTGCGTCGAGCGTGTGATCTATTTAGACTCTGATGTTATAGTTGTTGATGATATAGCCAAGCTGTGGAGGATAACTTTATCAGGGTCCAGAGTTATTGGTGCTCCGGAGTATTGTCACGCAAATTTCACCAAGTACTTTTCGAATGGATTTTGGGCGGATACGGAAATGTCTAGAGTTTTTGAAGGGAAAAGTGCTTGTTATTTCAATACAGGTGTGATGGTGATGGACTTGGTGAGATGGAGAGAGGGTGATTACACGCGGAAGATTGAGAGTTGGATGGAGATTCAGAAGGAGAAGAGGATTTACGAGCTGGGTTCTCTACCGCCTTTTTTGTTGGTCTTCGGTGGAGATGTAGAGCCTATTCACCACAGATGGAACCAACATGGGCTTGGTGGTGATAATGTGGTGAATAGTTGCAGGTCTTTGCATCCAGGTCCTGTGAGCTTGTTGCATTGGAGTGGGAAAGGGAAGCCATGGTCAAGGCTTGATTTGGGAGAGGCTTGCCTGGTTGATTTTCTATGGAGGCCTTATGATCTCTACAGACACCATGATCATCATCTTCACCACCACCATCATCAACACAATCTACAGCTATTGGACGTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0047262 GO:0050896 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

372

Amino Acids

42.55

Weight (kDa)

6.44

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	71 - 331	1e-54	Glycosyl transferase family 8
Glyco_transf_24	PF18404	158 - 254	9.4e-06	Glucosyltransferase 24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28340
fragaria_vesca	FvH4_6g49810
malus_domestica	MD17G1042500.v1.1
prunus_persica	Prupe.3G276500_v2.0.a1
pyrus_communis	pycom111g03210 pycom17g03810
rosa_chinensis	RchiOBHm_Chr2g0169951
rosa_laevigata	RLG00000021913
rosa_multiflora	Rmu_co8421609.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081720
rosa_rugosa	Rorug02G0544600
rosa_samantha	Rh2AG616700 Rh2BG628500 Rh2CG597800 Rh2DG639500
rosa_wichuraiana	Rw2G051080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	512
Acc36I	ACCTGC	1 cut(s)	918
AccB1I	GGYRCC	1 cut(s)	248
AccB7I	CCANNNNNTGG	1 cut(s)	573
AccBSI	CCGCTC	1 cut(s)	369
AccII	CGCG	1 cut(s)	769
AccIII	TCCGGA	1 cut(s)	613
AciI	CCGC	4 cut(s)	367, 665, 769, 833
AclWI	GGATC	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	631
AfaI	GTAC	3 cut(s)	140, 239, 644
AfiI	CCNNNNNNNGG	4 cut(s)	124, 166, 167, 573
AflIII	ACRYGT	1 cut(s)	191
AgsI	TTSAA	5 cut(s)	8, 409, 472, 692, 715
AjiI	CACGTC	1 cut(s)	192
AjnI	CCWGG	2 cut(s)	940, 1014
AluBI	AGCT	9 cut(s)	156, 180, 257, 455, 486, 571, 820, 954, 1102
AluI	AGCT	9 cut(s)	156, 180, 257, 455, 486, 571, 820, 954, 1102
Alw21I	GWGCWC	1 cut(s)	613
Alw26I	GTCTC	1 cut(s)	168
AlwI	GGATC	1 cut(s)	191
AlwNI	CAGNNNCTG	1 cut(s)	947
Ama87I	CYCGRG	2 cut(s)	134, 357
Aor13HI	TCCGGA	1 cut(s)	613
AoxI	GGCC	1 cut(s)	1034
ApeKI	GCWGC	2 cut(s)	156, 257
ApoI	RAATTY	1 cut(s)	631
AseI	ATTAAT	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	594, 944
AsuC2I	CCSGG	1 cut(s)	89
AsuII	TTCGAA	1 cut(s)	650
AvaI	CYCGRG	2 cut(s)	134, 357
AvaII	GGWCC	2 cut(s)	594, 944
BanI	GGYRCC	1 cut(s)	248
BarI	GAAGNNNNNNTAC	2 cut(s)	797, 829
BbsI	GAAGAC	2 cut(s)	354, 841
Bbv12I	GWGCWC	1 cut(s)	613
BbvI	GCAGC	2 cut(s)	143, 244
BccI	CCATC	8 cut(s)	23, 116, 721, 727, 741, 781, 876, 1089
BcgI	CGANNNNNNTGC	2 cut(s)	335, 369
BciT130I	CCWGG	2 cut(s)	942, 1016
BciVI	GTATCC	1 cut(s)	661
BclI	TGATCA	2 cut(s)	51, 1060
BcnI	CCSGG	1 cut(s)	89
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	2 cut(s)	419, 681
BfmI	CTRYAG	3 cut(s)	258, 1048, 1097
BfuAI	ACCTGC	1 cut(s)	918
BfuI	GTATCC	1 cut(s)	661
BisI	GCNGC	2 cut(s)	157, 258
BlsI	GCNGC	2 cut(s)	158, 259
BmcAI	AGTACT	2 cut(s)	239, 644
Bme1390I	CCNGG	3 cut(s)	89, 942, 1016
Bme18I	GGWCC	2 cut(s)	594, 944
BmeT110I	CYCGRG	2 cut(s)	134, 357
BmgBI	CACGTC	1 cut(s)	192
BmgT120I	GGNCC	2 cut(s)	594, 944
BmiI	GGNNCC	4 cut(s)	132, 250, 595, 887
BmrFI	CCNGG	3 cut(s)	89, 942, 1016
BmsI	GCATC	1 cut(s)	946
BpiI	GAAGAC	2 cut(s)	354, 841
Bpu14I	TTCGAA	1 cut(s)	650
BpuEI	CTTGAG	2 cut(s)	260, 262
BpuMI	CCSGG	1 cut(s)	89
BsaBI	GATNNNNATC	1 cut(s)	1065
BsaJI	CCNNGG	2 cut(s)	321, 983
BsaWI	WCCGGW	2 cut(s)	334, 613
BsaXI	ACNNNNNCTCC	2 cut(s)	742, 772
Bsc4I	CCNNNNNNNGG	4 cut(s)	124, 166, 167, 573
Bse1I	ACTGG	1 cut(s)	330
Bse3DI	GCAATG	1 cut(s)	225
Bse8I	GATNNNNATC	1 cut(s)	1065
BseAI	TCCGGA	1 cut(s)	613
BseBI	CCWGG	2 cut(s)	942, 1016
BseDI	CCNNGG	2 cut(s)	321, 983
BseGI	GGATG	2 cut(s)	792, 937
BseJI	GATNNNNATC	1 cut(s)	1065
BseLI	CCNNNNNNNGG	4 cut(s)	124, 166, 167, 573
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	400
BseNI	ACTGG	1 cut(s)	330
BseXI	GCAGC	2 cut(s)	143, 244
BseYI	CCCAGC	1 cut(s)	820
Bsh1236I	CGCG	1 cut(s)	769
BshFI	GGCC	1 cut(s)	1036
BshNI	GGYRCC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	613
BsiHKCI	CYCGRG	2 cut(s)	134, 357
BsiSI	CCGG	3 cut(s)	89, 335, 614
BslI	CCNNNNNNNGG	4 cut(s)	124, 166, 167, 573
BsmAI	GTCTC	1 cut(s)	168
BsnI	GGCC	1 cut(s)	1036
BsoBI	CYCGRG	2 cut(s)	134, 357
Bsp119I	TTCGAA	1 cut(s)	650
Bsp1286I	GDGCHC	1 cut(s)	613
Bsp13I	TCCGGA	1 cut(s)	613
Bsp143I	GATC	6 cut(s)	51, 80, 196, 525, 1042, 1060
Bsp19I	CCATGG	1 cut(s)	983
BspACI	CCGC	4 cut(s)	367, 665, 769, 833
BspANI	GGCC	1 cut(s)	1036
BspCNI	CTCAG	1 cut(s)	399
BspEI	TCCGGA	1 cut(s)	613
BspFNI	CGCG	1 cut(s)	769
BspLI	GGNNCC	4 cut(s)	132, 250, 595, 887
BspMAI	CTGCAG	1 cut(s)	262
BspMI	ACCTGC	1 cut(s)	918
BspPI	GGATC	1 cut(s)	191
BspT104I	TTCGAA	1 cut(s)	650
BspT107I	GGYRCC	1 cut(s)	248
BsrBI	CCGCTC	1 cut(s)	369
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	330
BssECI	CCNNGG	2 cut(s)	321, 983
BssMI	GATC	6 cut(s)	51, 80, 196, 525, 1042, 1060
BssT1I	CCWWGG	1 cut(s)	983
Bst2UI	CCWGG	2 cut(s)	942, 1016
Bst6I	CTCTTC	2 cut(s)	35, 800
BstBI	TTCGAA	1 cut(s)	650
BstC8I	GCNNGC	3 cut(s)	42, 282, 1012
BstDEI	CTNAG	2 cut(s)	386, 490
BstDSI	CCRYGG	1 cut(s)	983
BstF5I	GGATG	2 cut(s)	792, 937
BstFNI	CGCG	1 cut(s)	769
BstKTI	GATC	6 cut(s)	54, 83, 199, 528, 1045, 1063
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	6 cut(s)	51, 80, 196, 525, 1042, 1060
BstNI	CCWGG	2 cut(s)	942, 1016
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	3 cut(s)	87, 940, 1014
BstSFI	CTRYAG	3 cut(s)	258, 1048, 1097
BstUI	CGCG	1 cut(s)	769
BstV1I	GCAGC	2 cut(s)	143, 244
BstV2I	GAAGAC	2 cut(s)	354, 841
BstXI	CCANNNNNNTGG	1 cut(s)	22
BsuI	GTATCC	1 cut(s)	661
BsuRI	GGCC	1 cut(s)	1036
BtgI	CCRYGG	1 cut(s)	983
BtgZI	GCGATG	1 cut(s)	301
BtrI	CACGTC	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	792, 937
BveI	ACCTGC	1 cut(s)	918
Cac8I	GCNNGC	3 cut(s)	42, 282, 1012
CaiI	CAGNNNCTG	1 cut(s)	947
Cfr13I	GGNCC	2 cut(s)	594, 944
CseI	GACGC	1 cut(s)	502
Csp6I	GTAC	3 cut(s)	139, 238, 643
CviAII	CATG	4 cut(s)	71, 893, 984, 1058
CviQI	GTAC	3 cut(s)	139, 238, 643
DdeI	CTNAG	2 cut(s)	386, 490
DpnI	GATC	6 cut(s)	53, 82, 198, 527, 1044, 1062
DpnII	GATC	6 cut(s)	51, 80, 196, 525, 1042, 1060
DrdI	GACNNNNNNGTC	1 cut(s)	512
DseDI	GACNNNNNNGTC	1 cut(s)	512
Eam1104I	CTCTTC	2 cut(s)	35, 800
EarI	CTCTTC	2 cut(s)	35, 800
EciI	GGCGGA	1 cut(s)	680
Eco130I	CCWWGG	1 cut(s)	983
Eco147I	AGGCCT	1 cut(s)	1036
Eco47I	GGWCC	2 cut(s)	594, 944
Eco88I	CYCGRG	2 cut(s)	134, 357
EcoO109I	RGGNCCY	1 cut(s)	944
EcoRII	CCWGG	2 cut(s)	940, 1014
EcoT14I	CCWWGG	1 cut(s)	983
ErhI	CCWWGG	1 cut(s)	983
FaeI	CATG	4 cut(s)	74, 896, 987, 1061
FatI	CATG	4 cut(s)	70, 892, 983, 1057
FbaI	TGATCA	2 cut(s)	51, 1060
Fnu4HI	GCNGC	2 cut(s)	157, 258
FokI	GGATG	2 cut(s)	799, 924
Fsp4HI	GCNGC	2 cut(s)	157, 258
FspBI	CTAG	2 cut(s)	419, 681
GluI	GCNGC	2 cut(s)	157, 258
GsaI	CCCAGC	1 cut(s)	824
HaeIII	GGCC	1 cut(s)	1036
HapII	CCGG	3 cut(s)	89, 335, 614
HgaI	GACGC	1 cut(s)	502
Hin1II	CATG	4 cut(s)	74, 896, 987, 1061
HinfI	GANTC	6 cut(s)	150, 230, 326, 506, 536, 793
HpaII	CCGG	3 cut(s)	89, 335, 614
Hpy166II	GTNNAC	2 cut(s)	141, 265
Hpy188I	TCNGA	9 cut(s)	80, 127, 235, 325, 346, 395, 432, 541, 798
Hpy188III	TCNNGA	5 cut(s)	134, 458, 597, 614, 681
Hpy8I	GTNNAC	2 cut(s)	141, 265
Hpy99I	CGWCG	1 cut(s)	518
HpyAV	CCTTC	3 cut(s)	390, 686, 793
HpyCH4IV	ACGT	3 cut(s)	191, 374, 1110
HpyCH4V	TGCA	6 cut(s)	74, 218, 260, 927, 937, 961
HpyF3I	CTNAG	2 cut(s)	386, 490
HpySE526I	ACGT	3 cut(s)	191, 374, 1110
Hsp92II	CATG	4 cut(s)	74, 896, 987, 1061
Kpn2I	TCCGGA	1 cut(s)	613
Ksp22I	TGATCA	2 cut(s)	51, 1060
Kzo9I	GATC	6 cut(s)	51, 80, 196, 525, 1042, 1060
LmnI	GCTCC	3 cut(s)	136, 374, 616
Lsp1109I	GCAGC	2 cut(s)	143, 244
LweI	GCATC	1 cut(s)	946
MaeI	CTAG	2 cut(s)	419, 681
MaeII	ACGT	3 cut(s)	191, 374, 1110
MaeIII	GTNAC	1 cut(s)	623
MalI	GATC	6 cut(s)	53, 82, 198, 527, 1044, 1062
MbiI	CCGCTC	1 cut(s)	369
MboI	GATC	6 cut(s)	51, 80, 196, 525, 1042, 1060
MhlI	GDGCHC	1 cut(s)	613
MluCI	AATT	2 cut(s)	119, 631
MlyI	GAGTC	2 cut(s)	500, 530
MmeI	TCCRAC	1 cut(s)	764
MnlI	CCTC	9 cut(s)	121, 211, 239, 331, 570, 748, 801, 1000, 1026
MroI	TCCGGA	1 cut(s)	613
MseI	TTAA	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	966
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	3 cut(s)	89, 335, 614
MspR9I	CCNGG	3 cut(s)	89, 942, 1016
MvaI	CCWGG	2 cut(s)	942, 1016
MvnI	CGCG	1 cut(s)	769
NciI	CCSGG	1 cut(s)	89
NcoI	CCATGG	1 cut(s)	983
NdeII	GATC	6 cut(s)	51, 80, 196, 525, 1042, 1060
NlaIII	CATG	4 cut(s)	74, 896, 987, 1061
NlaIV	GGNNCC	4 cut(s)	132, 250, 595, 887
NmuCI	GTSAC	1 cut(s)	623
NspI	RCATGY	1 cut(s)	74
NspV	TTCGAA	1 cut(s)	650
PaeR7I	CTCGAG	1 cut(s)	357
PceI	AGGCCT	1 cut(s)	1036
PfeI	GAWTC	4 cut(s)	150, 230, 326, 793
PflMI	CCANNNNNTGG	1 cut(s)	573
PfoI	TCCNGGA	1 cut(s)	87
PkrI	GCNGC	2 cut(s)	158, 259
PleI	GAGTC	2 cut(s)	500, 530
PpsI	GAGTC	2 cut(s)	500, 530
PpuMI	RGGWCCY	1 cut(s)	944
PshBI	ATTAAT	1 cut(s)	60
Psp5II	RGGWCCY	1 cut(s)	944
Psp6I	CCWGG	2 cut(s)	940, 1014
PspFI	CCCAGC	1 cut(s)	820
PspGI	CCWGG	2 cut(s)	940, 1014
PspN4I	GGNNCC	4 cut(s)	132, 250, 595, 887
PspPI	GGNCC	2 cut(s)	594, 944
PspPPI	RGGWCCY	1 cut(s)	944
PspXI	VCTCGAGB	1 cut(s)	357
PstI	CTGCAG	1 cut(s)	262
PstNI	CAGNNNCTG	1 cut(s)	947
PvuII	CAGCTG	1 cut(s)	156
RsaI	GTAC	3 cut(s)	140, 239, 644
RsaNI	GTAC	3 cut(s)	139, 238, 643
RseI	CAYNNNNRTG	1 cut(s)	966
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	2 cut(s)	157, 258
Sau3AI	GATC	6 cut(s)	51, 80, 196, 525, 1042, 1060
Sau96I	GGNCC	2 cut(s)	594, 944
ScaI	AGTACT	2 cut(s)	239, 644
SchI	GAGTC	2 cut(s)	500, 530
ScrFI	CCNGG	3 cut(s)	89, 942, 1016
SduI	GDGCHC	1 cut(s)	613
SfaNI	GCATC	1 cut(s)	946
SfcI	CTRYAG	3 cut(s)	258, 1048, 1097
Sfr274I	CTCGAG	1 cut(s)	357
SfuI	TTCGAA	1 cut(s)	650
SinI	GGWCC	2 cut(s)	594, 944
SlaI	CTCGAG	1 cut(s)	357
SmiMI	CAYNNNNRTG	1 cut(s)	966
SmlI	CTYRAG	3 cut(s)	241, 275, 357
SmoI	CTYRAG	3 cut(s)	241, 275, 357
Sse9I	AATT	2 cut(s)	119, 631
SseBI	AGGCCT	1 cut(s)	1036
SsiI	CCGC	4 cut(s)	367, 665, 769, 833
SspMI	CTAG	2 cut(s)	419, 681
StuI	AGGCCT	1 cut(s)	1036
StyD4I	CCNGG	3 cut(s)	87, 940, 1014
StyI	CCWWGG	1 cut(s)	983
TaiI	ACGT	3 cut(s)	194, 377, 1113
TaqI	TCGA	3 cut(s)	358, 516, 650
TasI	AATT	2 cut(s)	119, 631
TatI	WGTACW	3 cut(s)	138, 237, 642
TfiI	GAWTC	4 cut(s)	150, 230, 326, 793
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TseFI	GTSAC	1 cut(s)	623
TseI	GCWGC	2 cut(s)	156, 257
Tsp45I	GTSAC	1 cut(s)	623
TspDTI	ATGAA	3 cut(s)	200, 304, 426
TspGWI	ACGGA	2 cut(s)	413, 686
Van91I	CCANNNNNTGG	1 cut(s)	573
VpaK11BI	GGWCC	2 cut(s)	594, 944
VspI	ATTAAT	1 cut(s)	60
XapI	RAATTY	1 cut(s)	631
XbaI	TCTAGA	1 cut(s)	680
XceI	RCATGY	1 cut(s)	74
XcmI	CCANNNNNNNNNTGG	1 cut(s)	896
XhoI	CTCGAG	1 cut(s)	357
XspI	CTAG	2 cut(s)	419, 681
ZrmI	AGTACT	2 cut(s)	239, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.