Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0015023

Physical Location & Seq

Genomic Coordinates Reverse (-)

4706670 .. 4707785

Gene Structure 1116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00081720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGTTACAAAGAACCATCTTCTTGGTTCTCTTCTTCTTGCTCGCTTCTTTGATCACCATTCCCACACATGCTATCCGATCATTCCCGGGAAGAGTAGGGTTTTCCATCTCGCACCAATTCTCGGAGGCTCCCGAGTACACCAATGGATTCAGCTGCCCTGTTTTGGGTGGAGACAGCTTTCCAAAGACGTGTGATCGCTCTCTTGTTCATATTGCAATGACTATTGATTCCGAGTACTTGAGAGGCACCATAGCTGCAGTCCACTCTGTTCTCAAGCACGCTTCTTGCCCTGAAAACATCTTCTTCCACTTCATCGCCTCGGATTCCAGTCCGGTCAGTTCCGAAGACCTTACTCGAGTTGTCCACTCCACGTTTCCTTCTCTCAGTTTCAGAGTTTATCAGTTCAAGGAGAGCCTAGTCAGTCATCTGATTTCATCTTCCATTCGTCAAGCTCTTGATAACCCCTTGAACTACGCAAGAAGCTACTTAGCCGACTTGCTAGACTCCTGCGTCGAGCGTGTGATCTATTTAGACTCTGATGTTATAGTTGTTGATGATATAGCCAAGCTGTGGAGGATAACTTTATCAGGGTCCAGAGTTATTGGTGCTCCGGAGTATTGTCACGCAAATTTCACCAAGTACTTTTCGAATGGATTTTGGGCGGATACGGAAATGTCTGGAGTTTTTGAAGGGAAAAGTGCTTGTTATTTCAATACAGGTGTGATGGTGATGGACTTGGTGAGATGGAGAGAGGGTGATTACACGCGGAAGATTGAGAGTTGGATGGAGATTCAGAAGGAGAAGAGGATTTACGAGCTGGGTTCTCTACCGCCTTTTTTGTTGGTCTTCGGTGGAGATGTAGAGGCTATTCACCACAGATGGAACCAACATGGGCTTGGTGGTGATAATGTGGTGAATAGTTGCAGGTCTTTGCATCCAGGTCCTGTGAGCTTGTTGCATTGGAGTGGGAAAGGGAAGCCATGGTCAAGGCTTGATTTGGGAGAGGCTTGCCTGGTTGATTTTCTATGGGCGCCTTATGATCTCTACAGACACCATGATCATCATCTTCACCACCACCATCATCAACACAATCTACAGCTATTGGACGTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0047262 GO:0050896 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

371

Amino Acids

42.13

Weight (kDa)

6.3

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	70 - 330	1.8e-54	Glycosyl transferase family 8
Glyco_transf_24	PF18404	87 - 253	9.5e-06	Glucosyltransferase 24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28340
fragaria_vesca	FvH4_6g49810
malus_domestica	MD17G1042500.v1.1
prunus_persica	Prupe.3G276500_v2.0.a1
pyrus_communis	pycom111g03210 pycom17g03810
rosa_chinensis	RchiOBHm_Chr2g0169951
rosa_laevigata	RLG00000021913
rosa_multiflora	Rmu_co8421609.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081720
rosa_rugosa	Rorug02G0544600
rosa_samantha	Rh2AG616700 Rh2BG628500 Rh2CG597800 Rh2DG639500
rosa_wichuraiana	Rw2G051080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	509
Acc36I	ACCTGC	1 cut(s)	915
AccB1I	GGYRCC	2 cut(s)	245, 1030
AccB7I	CCANNNNNTGG	1 cut(s)	570
AccII	CGCG	1 cut(s)	766
AccIII	TCCGGA	1 cut(s)	610
AciI	CCGC	3 cut(s)	662, 766, 830
AcsI	RAATTY	1 cut(s)	628
AcyI	GRCGYC	1 cut(s)	1031
AfaI	GTAC	3 cut(s)	137, 236, 641
AfiI	CCNNNNNNNGG	4 cut(s)	121, 163, 164, 570
AflIII	ACRYGT	1 cut(s)	188
AgsI	TTSAA	4 cut(s)	406, 469, 689, 712
AjiI	CACGTC	1 cut(s)	189
AjnI	CCWGG	2 cut(s)	937, 1011
AluBI	AGCT	9 cut(s)	153, 177, 254, 452, 483, 568, 817, 951, 1099
AluI	AGCT	9 cut(s)	153, 177, 254, 452, 483, 568, 817, 951, 1099
Alw21I	GWGCWC	1 cut(s)	610
Alw26I	GTCTC	1 cut(s)	165
AlwNI	CAGNNNCTG	1 cut(s)	944
Ama87I	CYCGRG	3 cut(s)	85, 131, 354
Aor13HI	TCCGGA	1 cut(s)	610
ApeKI	GCWGC	2 cut(s)	153, 254
ApoI	RAATTY	1 cut(s)	628
AspLEI	GCGC	1 cut(s)	1033
AspS9I	GGNCC	2 cut(s)	591, 941
AsuC2I	CCSGG	2 cut(s)	86, 87
AsuHPI	GGTGA	9 cut(s)	46, 625, 739, 751, 767, 863, 914, 925, 1061
AsuII	TTCGAA	1 cut(s)	647
AvaI	CYCGRG	3 cut(s)	85, 131, 354
AvaII	GGWCC	2 cut(s)	591, 941
BanI	GGYRCC	2 cut(s)	245, 1030
BarI	GAAGNNNNNNTAC	2 cut(s)	794, 826
BbsI	GAAGAC	2 cut(s)	351, 838
Bbv12I	GWGCWC	1 cut(s)	610
BbvI	GCAGC	2 cut(s)	140, 241
BccI	CCATC	8 cut(s)	23, 113, 718, 724, 738, 778, 873, 1086
BciT130I	CCWGG	2 cut(s)	939, 1013
BciVI	GTATCC	1 cut(s)	658
BclI	TGATCA	2 cut(s)	51, 1057
BcnI	CCSGG	2 cut(s)	86, 87
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	2 cut(s)	416, 500
BfmI	CTRYAG	3 cut(s)	255, 1045, 1094
BfoI	RGCGCY	1 cut(s)	1034
BfuAI	ACCTGC	1 cut(s)	915
BfuI	GTATCC	1 cut(s)	658
BisI	GCNGC	2 cut(s)	154, 255
BlsI	GCNGC	2 cut(s)	155, 256
BmcAI	AGTACT	2 cut(s)	236, 641
Bme1390I	CCNGG	4 cut(s)	86, 87, 939, 1013
Bme18I	GGWCC	2 cut(s)	591, 941
BmeT110I	CYCGRG	3 cut(s)	85, 131, 354
BmgBI	CACGTC	1 cut(s)	189
BmgT120I	GGNCC	2 cut(s)	591, 941
BmiI	GGNNCC	5 cut(s)	129, 247, 592, 884, 1032
BmrFI	CCNGG	4 cut(s)	86, 87, 939, 1013
BmsI	GCATC	1 cut(s)	943
BpiI	GAAGAC	2 cut(s)	351, 838
BpmI	CTGGAG	1 cut(s)	699
Bpu14I	TTCGAA	1 cut(s)	647
BpuEI	CTTGAG	2 cut(s)	257, 259
BpuMI	CCSGG	2 cut(s)	86, 87
BsaBI	GATNNNNATC	1 cut(s)	1062
BsaHI	GRCGYC	1 cut(s)	1031
BsaJI	CCNNGG	3 cut(s)	85, 318, 980
BsaWI	WCCGGW	2 cut(s)	331, 610
BsaXI	ACNNNNNCTCC	2 cut(s)	739, 769
Bsc4I	CCNNNNNNNGG	4 cut(s)	121, 163, 164, 570
Bse1I	ACTGG	1 cut(s)	327
Bse3DI	GCAATG	1 cut(s)	222
Bse8I	GATNNNNATC	1 cut(s)	1062
BseAI	TCCGGA	1 cut(s)	610
BseBI	CCWGG	2 cut(s)	939, 1013
BseDI	CCNNGG	3 cut(s)	85, 318, 980
BseGI	GGATG	2 cut(s)	789, 934
BseJI	GATNNNNATC	1 cut(s)	1062
BseLI	CCNNNNNNNGG	4 cut(s)	121, 163, 164, 570
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	397
BseNI	ACTGG	1 cut(s)	327
BseXI	GCAGC	2 cut(s)	140, 241
BseYI	CCCAGC	1 cut(s)	817
Bsh1236I	CGCG	1 cut(s)	766
BshNI	GGYRCC	2 cut(s)	245, 1030
BsiHKAI	GWGCWC	1 cut(s)	610
BsiHKCI	CYCGRG	3 cut(s)	85, 131, 354
BsiSI	CCGG	3 cut(s)	86, 332, 611
BslI	CCNNNNNNNGG	4 cut(s)	121, 163, 164, 570
BsmAI	GTCTC	1 cut(s)	165
BsoBI	CYCGRG	3 cut(s)	85, 131, 354
Bsp119I	TTCGAA	1 cut(s)	647
Bsp1286I	GDGCHC	1 cut(s)	610
Bsp13I	TCCGGA	1 cut(s)	610
Bsp143I	GATC	6 cut(s)	51, 77, 193, 522, 1039, 1057
Bsp19I	CCATGG	1 cut(s)	980
BspACI	CCGC	3 cut(s)	662, 766, 830
BspCNI	CTCAG	1 cut(s)	396
BspEI	TCCGGA	1 cut(s)	610
BspFNI	CGCG	1 cut(s)	766
BspLI	GGNNCC	5 cut(s)	129, 247, 592, 884, 1032
BspMAI	CTGCAG	1 cut(s)	259
BspMI	ACCTGC	1 cut(s)	915
BspT104I	TTCGAA	1 cut(s)	647
BspT107I	GGYRCC	2 cut(s)	245, 1030
BsrDI	GCAATG	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	327
BssECI	CCNNGG	3 cut(s)	85, 318, 980
BssMI	GATC	6 cut(s)	51, 77, 193, 522, 1039, 1057
BssNI	GRCGYC	1 cut(s)	1031
BssT1I	CCWWGG	1 cut(s)	980
Bst2UI	CCWGG	2 cut(s)	939, 1013
Bst6I	CTCTTC	3 cut(s)	35, 85, 797
BstACI	GRCGYC	1 cut(s)	1031
BstBI	TTCGAA	1 cut(s)	647
BstC8I	GCNNGC	3 cut(s)	42, 279, 1009
BstDEI	CTNAG	2 cut(s)	383, 487
BstDSI	CCRYGG	1 cut(s)	980
BstF5I	GGATG	2 cut(s)	789, 934
BstFNI	CGCG	1 cut(s)	766
BstH2I	RGCGCY	1 cut(s)	1034
BstHHI	GCGC	1 cut(s)	1033
BstKTI	GATC	6 cut(s)	54, 80, 196, 525, 1042, 1060
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	6 cut(s)	51, 77, 193, 522, 1039, 1057
BstNI	CCWGG	2 cut(s)	939, 1013
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	4 cut(s)	84, 85, 937, 1011
BstSFI	CTRYAG	3 cut(s)	255, 1045, 1094
BstUI	CGCG	1 cut(s)	766
BstV1I	GCAGC	2 cut(s)	140, 241
BstV2I	GAAGAC	2 cut(s)	351, 838
BstXI	CCANNNNNNTGG	1 cut(s)	22
BsuI	GTATCC	1 cut(s)	658
BtgI	CCRYGG	1 cut(s)	980
BtgZI	GCGATG	1 cut(s)	298
BtrI	CACGTC	1 cut(s)	189
BtsCI	GGATG	2 cut(s)	789, 934
BveI	ACCTGC	1 cut(s)	915
Cac8I	GCNNGC	3 cut(s)	42, 279, 1009
CaiI	CAGNNNCTG	1 cut(s)	944
CfoI	GCGC	1 cut(s)	1033
Cfr13I	GGNCC	2 cut(s)	591, 941
Cfr9I	CCCGGG	1 cut(s)	85
CseI	GACGC	1 cut(s)	499
Csp6I	GTAC	3 cut(s)	136, 235, 640
CviAII	CATG	4 cut(s)	68, 890, 981, 1055
CviQI	GTAC	3 cut(s)	136, 235, 640
DdeI	CTNAG	2 cut(s)	383, 487
DinI	GGCGCC	1 cut(s)	1032
DpnI	GATC	6 cut(s)	53, 79, 195, 524, 1041, 1059
DpnII	GATC	6 cut(s)	51, 77, 193, 522, 1039, 1057
DrdI	GACNNNNNNGTC	1 cut(s)	509
DseDI	GACNNNNNNGTC	1 cut(s)	509
Eam1104I	CTCTTC	3 cut(s)	35, 85, 797
EarI	CTCTTC	3 cut(s)	35, 85, 797
EciI	GGCGGA	1 cut(s)	677
Eco130I	CCWWGG	1 cut(s)	980
Eco47I	GGWCC	2 cut(s)	591, 941
Eco88I	CYCGRG	3 cut(s)	85, 131, 354
EcoO109I	RGGNCCY	1 cut(s)	941
EcoRII	CCWGG	2 cut(s)	937, 1011
EcoT14I	CCWWGG	1 cut(s)	980
EgeI	GGCGCC	1 cut(s)	1032
EheI	GGCGCC	1 cut(s)	1032
ErhI	CCWWGG	1 cut(s)	980
FaeI	CATG	4 cut(s)	71, 893, 984, 1058
FatI	CATG	4 cut(s)	67, 889, 980, 1054
FbaI	TGATCA	2 cut(s)	51, 1057
Fnu4HI	GCNGC	2 cut(s)	154, 255
FokI	GGATG	2 cut(s)	796, 921
Fsp4HI	GCNGC	2 cut(s)	154, 255
FspBI	CTAG	2 cut(s)	416, 500
GlaI	GCGC	1 cut(s)	1032
GluI	GCNGC	2 cut(s)	154, 255
GsaI	CCCAGC	1 cut(s)	821
GsuI	CTGGAG	1 cut(s)	699
HaeII	RGCGCY	1 cut(s)	1034
HapII	CCGG	3 cut(s)	86, 332, 611
HgaI	GACGC	1 cut(s)	499
HhaI	GCGC	1 cut(s)	1033
Hin1I	GRCGYC	1 cut(s)	1031
Hin1II	CATG	4 cut(s)	71, 893, 984, 1058
Hin6I	GCGC	1 cut(s)	1031
HinP1I	GCGC	1 cut(s)	1031
HinfI	GANTC	6 cut(s)	147, 227, 323, 503, 533, 790
HpaII	CCGG	3 cut(s)	86, 332, 611
HphI	GGTGA	9 cut(s)	46, 625, 739, 751, 767, 863, 914, 925, 1061
Hpy166II	GTNNAC	3 cut(s)	138, 262, 364
Hpy188I	TCNGA	9 cut(s)	77, 124, 232, 322, 343, 392, 429, 538, 795
Hpy188III	TCNNGA	5 cut(s)	131, 455, 594, 611, 678
Hpy8I	GTNNAC	3 cut(s)	138, 262, 364
Hpy99I	CGWCG	1 cut(s)	515
HpyAV	CCTTC	3 cut(s)	387, 683, 790
HpyCH4IV	ACGT	3 cut(s)	188, 371, 1107
HpyCH4V	TGCA	5 cut(s)	215, 257, 924, 934, 958
HpyF3I	CTNAG	2 cut(s)	383, 487
HpySE526I	ACGT	3 cut(s)	188, 371, 1107
Hsp92I	GRCGYC	1 cut(s)	1031
Hsp92II	CATG	4 cut(s)	71, 893, 984, 1058
HspAI	GCGC	1 cut(s)	1031
KasI	GGCGCC	1 cut(s)	1030
Kpn2I	TCCGGA	1 cut(s)	610
Ksp22I	TGATCA	2 cut(s)	51, 1057
Kzo9I	GATC	6 cut(s)	51, 77, 193, 522, 1039, 1057
LmnI	GCTCC	2 cut(s)	133, 613
Lsp1109I	GCAGC	2 cut(s)	140, 241
LweI	GCATC	1 cut(s)	943
MaeI	CTAG	2 cut(s)	416, 500
MaeII	ACGT	3 cut(s)	188, 371, 1107
MaeIII	GTNAC	2 cut(s)	3, 620
MalI	GATC	6 cut(s)	53, 79, 195, 524, 1041, 1059
MboI	GATC	6 cut(s)	51, 77, 193, 522, 1039, 1057
MhlI	GDGCHC	1 cut(s)	610
MluCI	AATT	2 cut(s)	116, 628
Mly113I	GGCGCC	1 cut(s)	1031
MlyI	GAGTC	2 cut(s)	497, 527
MmeI	TCCRAC	1 cut(s)	761
MnlI	CCTC	8 cut(s)	118, 236, 328, 567, 745, 798, 856, 997
MroI	TCCGGA	1 cut(s)	610
MslI	CAYNNNNRTG	1 cut(s)	963
MspA1I	CMGCKG	1 cut(s)	153
MspI	CCGG	3 cut(s)	86, 332, 611
MspR9I	CCNGG	4 cut(s)	86, 87, 939, 1013
MvaI	CCWGG	2 cut(s)	939, 1013
MvnI	CGCG	1 cut(s)	766
NarI	GGCGCC	1 cut(s)	1031
NciI	CCSGG	2 cut(s)	86, 87
NcoI	CCATGG	1 cut(s)	980
NdeII	GATC	6 cut(s)	51, 77, 193, 522, 1039, 1057
NlaIII	CATG	4 cut(s)	71, 893, 984, 1058
NlaIV	GGNNCC	5 cut(s)	129, 247, 592, 884, 1032
NmuCI	GTSAC	1 cut(s)	620
NspI	RCATGY	1 cut(s)	71
NspV	TTCGAA	1 cut(s)	647
PaeR7I	CTCGAG	1 cut(s)	354
PfeI	GAWTC	4 cut(s)	147, 227, 323, 790
PflMI	CCANNNNNTGG	1 cut(s)	570
PkrI	GCNGC	2 cut(s)	155, 256
PleI	GAGTC	2 cut(s)	497, 527
PluTI	GGCGCC	1 cut(s)	1034
PpsI	GAGTC	2 cut(s)	497, 527
PpuMI	RGGWCCY	1 cut(s)	941
Psp5II	RGGWCCY	1 cut(s)	941
Psp6I	CCWGG	2 cut(s)	937, 1011
PspFI	CCCAGC	1 cut(s)	817
PspGI	CCWGG	2 cut(s)	937, 1011
PspN4I	GGNNCC	5 cut(s)	129, 247, 592, 884, 1032
PspPI	GGNCC	2 cut(s)	591, 941
PspPPI	RGGWCCY	1 cut(s)	941
PspXI	VCTCGAGB	1 cut(s)	354
PstI	CTGCAG	1 cut(s)	259
PstNI	CAGNNNCTG	1 cut(s)	944
PvuII	CAGCTG	1 cut(s)	153
RsaI	GTAC	3 cut(s)	137, 236, 641
RsaNI	GTAC	3 cut(s)	136, 235, 640
RseI	CAYNNNNRTG	1 cut(s)	963
SatI	GCNGC	2 cut(s)	154, 255
Sau3AI	GATC	6 cut(s)	51, 77, 193, 522, 1039, 1057
Sau96I	GGNCC	2 cut(s)	591, 941
ScaI	AGTACT	2 cut(s)	236, 641
SchI	GAGTC	2 cut(s)	497, 527
ScrFI	CCNGG	4 cut(s)	86, 87, 939, 1013
SduI	GDGCHC	1 cut(s)	610
SfaNI	GCATC	1 cut(s)	943
SfcI	CTRYAG	3 cut(s)	255, 1045, 1094
SfoI	GGCGCC	1 cut(s)	1032
Sfr274I	CTCGAG	1 cut(s)	354
SfuI	TTCGAA	1 cut(s)	647
SinI	GGWCC	2 cut(s)	591, 941
SlaI	CTCGAG	1 cut(s)	354
SmaI	CCCGGG	1 cut(s)	87
SmiMI	CAYNNNNRTG	1 cut(s)	963
SmlI	CTYRAG	3 cut(s)	238, 272, 354
SmoI	CTYRAG	3 cut(s)	238, 272, 354
Sse9I	AATT	2 cut(s)	116, 628
SsiI	CCGC	3 cut(s)	662, 766, 830
SspDI	GGCGCC	1 cut(s)	1030
SspMI	CTAG	2 cut(s)	416, 500
StyD4I	CCNGG	4 cut(s)	84, 85, 937, 1011
StyI	CCWWGG	1 cut(s)	980
TaiI	ACGT	3 cut(s)	191, 374, 1110
TaqI	TCGA	3 cut(s)	355, 513, 647
TasI	AATT	2 cut(s)	116, 628
TatI	WGTACW	3 cut(s)	135, 234, 639
TfiI	GAWTC	4 cut(s)	147, 227, 323, 790
TseFI	GTSAC	1 cut(s)	620
TseI	GCWGC	2 cut(s)	153, 254
Tsp45I	GTSAC	1 cut(s)	620
TspDTI	ATGAA	3 cut(s)	197, 301, 423
TspGWI	ACGGA	1 cut(s)	683
TspMI	CCCGGG	1 cut(s)	85
Van91I	CCANNNNNTGG	1 cut(s)	570
VpaK11BI	GGWCC	2 cut(s)	591, 941
XapI	RAATTY	1 cut(s)	628
XceI	RCATGY	1 cut(s)	71
XcmI	CCANNNNNNNNNTGG	1 cut(s)	893
XhoI	CTCGAG	1 cut(s)	354
XmaI	CCCGGG	1 cut(s)	85
XspI	CTAG	2 cut(s)	416, 500
ZrmI	AGTACT	2 cut(s)	236, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.