Rw2G051080

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0015023
Physical Location & Seq
Forward (+)
78774224 .. 78775787
1564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G051080.1

Sequence Viewer

Length: 1122 bp
ATGTTTCAAAGAACCATCTTCTTGGTTCTCTTCTTCTTGCTCGCTTCTTTGATCACCATTAATCCCACACATGCAATCCGATCATTCCCGGAAAGAGTAGGGTTTTCCATCTCGCACCAATTCTCGGAGGCTCCCGAGTACACCAATGGATTCAGCTGCCCTGTTTTGGGTGGAGACAGCTTTCCAAAGACGTGTGATCCCTCTCTTGTTCATATTGCAATGACTATTGATTCCGAGTACTTGAGAGGCACCATAGCTGCAGTCCACTCTGTTCTCAAGCACGCTTCTTGCCCTGAAAACACTTTCTTCCACTTCATCGCCTCGGATTCCAGTCCGGTGAGTTCCGAAGACCTTACTCGAGTTGTCCGCTCCACGTTTCCTTCTCTCAGTTTCAGAGTTTATCAGTTCAAGGAGAGCCTAGTCCGTCATCTGATTTCATCTTCCATTCGTCAAGCTCTTGATAACCCCTTGAACTACGCAAGAAGCTACTTAGCCGATTTGCTAGACTCCTGCGTCGAGCGTGTGATCTATTTAGACTCTGATGTTATAGTCGTTGATGATATAGCCAAGCTGTGGAGGATAATTTTATCAGGGTCCAGAGTTATTGGTGCTCCGGAGTATTGTCACGCAAATTTCACCAAGTACTTTTCGAATGGATTTTGGGCGGATACGGAAATGTCTAGAGTTTTTGAAGGGAAAAGTGCTTGTTATTTCAATACAGGTGTGATGGTGATGGACTTGGTGAGATGGAGAGAGGGTGATTACACGCGGAAGATTGAGAGTTGGATGGAGATTCAGAAGGAGAAGAGGATTTACGAGCTGGGTTCTCTACCGCCTTTTTTGTTGGTCTTCGGTGGAGATGTAGAGCCTATTCACCACAGATGGAACCAACATGGGCTTGGTGGTGATAATGTGGTGAATAGTTGCAGGTCTTTGCATCCAGGTCCTGTGAGCTTGTTGCATTGGAGTGGGAAAGGGAAGCCGTGGTCAAGGCTTGATTTGGGAGAGGCCTGCCTGGTTGATTTTCTATGGAGGCCTTATGATCTCTACAGACACCATAATCGTCATCATCTTCACCACCACCATCATCAACACAATCTACAGCTATTGGACGTTTTGTAG

Protein Analysis

373

Amino Acids

42.75

Weight (kDa)

6.63

Isoelectric Point (pI)

51.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 71 - 331 1.5e-54 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015023)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28340
fragaria_vesca FvH4_6g49810
malus_domestica MD17G1042500.v1.1
prunus_persica Prupe.3G276500_v2.0.a1
pyrus_communis pycom111g03210 pycom17g03810
rosa_chinensis RchiOBHm_Chr2g0169951
rosa_laevigata RLG00000021913
rosa_multiflora Rmu_co8421609.1_g000001
rosa_roxburghii Rroxscaffold_2G00081720
rosa_rugosa Rorug02G0544600
rosa_samantha Rh2AG616700 Rh2BG628500 Rh2CG597800 Rh2DG639500
rosa_wichuraiana Rw2G051080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 512
Acc36I ACCTGC 1 cut(s) 918
AccB1I GGYRCC 1 cut(s) 248
AccB7I CCANNNNNTGG 1 cut(s) 573
AccBSI CCGCTC 1 cut(s) 369
AccII CGCG 1 cut(s) 769
AccIII TCCGGA 1 cut(s) 613
AciI CCGC 4 cut(s) 367, 665, 769, 833
AclWI GGATC 1 cut(s) 191
AcsI RAATTY 1 cut(s) 631
AfaI GTAC 3 cut(s) 140, 239, 644
AfiI CCNNNNNNNGG 4 cut(s) 124, 166, 167, 573
AflIII ACRYGT 1 cut(s) 191
AgsI TTSAA 5 cut(s) 8, 409, 472, 692, 715
AjiI CACGTC 1 cut(s) 192
AjnI CCWGG 2 cut(s) 940, 1014
AluBI AGCT 9 cut(s) 156, 180, 257, 455, 486, 571, 820, 954, 1105
AluI AGCT 9 cut(s) 156, 180, 257, 455, 486, 571, 820, 954, 1105
Alw21I GWGCWC 1 cut(s) 613
Alw26I GTCTC 1 cut(s) 168
AlwI GGATC 1 cut(s) 191
AlwNI CAGNNNCTG 1 cut(s) 947
Ama87I CYCGRG 2 cut(s) 134, 357
Aor13HI TCCGGA 1 cut(s) 613
AoxI GGCC 2 cut(s) 1008, 1034
ApeKI GCWGC 2 cut(s) 156, 257
ApoI RAATTY 1 cut(s) 631
AseI ATTAAT 1 cut(s) 60
AspS9I GGNCC 2 cut(s) 594, 944
AsuC2I CCSGG 1 cut(s) 89
AsuII TTCGAA 1 cut(s) 650
AvaI CYCGRG 2 cut(s) 134, 357
AvaII GGWCC 2 cut(s) 594, 944
BanI GGYRCC 1 cut(s) 248
BarI GAAGNNNNNNTAC 2 cut(s) 797, 829
BbsI GAAGAC 2 cut(s) 354, 841
Bbv12I GWGCWC 1 cut(s) 613
BbvI GCAGC 2 cut(s) 143, 244
BccI CCATC 8 cut(s) 23, 116, 721, 727, 741, 781, 876, 1092
BceAI ACGGC 1 cut(s) 967
BciT130I CCWGG 2 cut(s) 942, 1016
BciVI GTATCC 1 cut(s) 661
BclI TGATCA 1 cut(s) 51
BcnI CCSGG 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 168
BfaI CTAG 3 cut(s) 419, 503, 681
BfmI CTRYAG 3 cut(s) 258, 1048, 1100
BfuAI ACCTGC 1 cut(s) 918
BfuI GTATCC 1 cut(s) 661
BisI GCNGC 2 cut(s) 157, 258
BlsI GCNGC 2 cut(s) 158, 259
BmcAI AGTACT 2 cut(s) 239, 644
Bme1390I CCNGG 3 cut(s) 89, 942, 1016
Bme18I GGWCC 2 cut(s) 594, 944
BmeT110I CYCGRG 2 cut(s) 134, 357
BmgBI CACGTC 1 cut(s) 192
BmgT120I GGNCC 2 cut(s) 594, 944
BmiI GGNNCC 4 cut(s) 132, 250, 595, 887
BmrFI CCNGG 3 cut(s) 89, 942, 1016
BmsI GCATC 1 cut(s) 946
BpiI GAAGAC 2 cut(s) 354, 841
Bpu14I TTCGAA 1 cut(s) 650
BpuEI CTTGAG 2 cut(s) 260, 262
BpuMI CCSGG 1 cut(s) 89
BsaJI CCNNGG 2 cut(s) 321, 983
BsaWI WCCGGW 2 cut(s) 334, 613
BsaXI ACNNNNNCTCC 2 cut(s) 742, 772
Bsc4I CCNNNNNNNGG 4 cut(s) 124, 166, 167, 573
Bse1I ACTGG 1 cut(s) 330
Bse3DI GCAATG 1 cut(s) 225
BseAI TCCGGA 1 cut(s) 613
BseBI CCWGG 2 cut(s) 942, 1016
BseDI CCNNGG 2 cut(s) 321, 983
BseGI GGATG 2 cut(s) 792, 937
BseLI CCNNNNNNNGG 4 cut(s) 124, 166, 167, 573
BseMI GCAATG 1 cut(s) 225
BseMII CTCAG 1 cut(s) 400
BseNI ACTGG 1 cut(s) 330
BseXI GCAGC 2 cut(s) 143, 244
BseYI CCCAGC 1 cut(s) 820
Bsh1236I CGCG 1 cut(s) 769
BshFI GGCC 2 cut(s) 1010, 1036
BshNI GGYRCC 1 cut(s) 248
BsiHKAI GWGCWC 1 cut(s) 613
BsiHKCI CYCGRG 2 cut(s) 134, 357
BsiSI CCGG 3 cut(s) 89, 335, 614
BslI CCNNNNNNNGG 4 cut(s) 124, 166, 167, 573
BsmAI GTCTC 1 cut(s) 168
BsnI GGCC 2 cut(s) 1010, 1036
BsoBI CYCGRG 2 cut(s) 134, 357
Bsp119I TTCGAA 1 cut(s) 650
Bsp1286I GDGCHC 1 cut(s) 613
Bsp13I TCCGGA 1 cut(s) 613
Bsp143I GATC 5 cut(s) 51, 80, 196, 525, 1042
BspACI CCGC 4 cut(s) 367, 665, 769, 833
BspANI GGCC 2 cut(s) 1010, 1036
BspCNI CTCAG 1 cut(s) 399
BspEI TCCGGA 1 cut(s) 613
BspFNI CGCG 1 cut(s) 769
BspLI GGNNCC 4 cut(s) 132, 250, 595, 887
BspMAI CTGCAG 1 cut(s) 262
BspMI ACCTGC 1 cut(s) 918
BspPI GGATC 1 cut(s) 191
BspT104I TTCGAA 1 cut(s) 650
BspT107I GGYRCC 1 cut(s) 248
BsrBI CCGCTC 1 cut(s) 369
BsrDI GCAATG 1 cut(s) 225
BsrI ACTGG 1 cut(s) 330
BssECI CCNNGG 2 cut(s) 321, 983
BssMI GATC 5 cut(s) 51, 80, 196, 525, 1042
Bst2UI CCWGG 2 cut(s) 942, 1016
Bst6I CTCTTC 2 cut(s) 35, 800
BstBI TTCGAA 1 cut(s) 650
BstC8I GCNNGC 3 cut(s) 42, 282, 1012
BstDEI CTNAG 2 cut(s) 386, 490
BstDSI CCRYGG 1 cut(s) 983
BstF5I GGATG 2 cut(s) 792, 937
BstFNI CGCG 1 cut(s) 769
BstKTI GATC 5 cut(s) 54, 83, 199, 528, 1045
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 5 cut(s) 51, 80, 196, 525, 1042
BstNI CCWGG 2 cut(s) 942, 1016
BstNSI RCATGY 1 cut(s) 74
BstSCI CCNGG 3 cut(s) 87, 940, 1014
BstSFI CTRYAG 3 cut(s) 258, 1048, 1100
BstUI CGCG 1 cut(s) 769
BstV1I GCAGC 2 cut(s) 143, 244
BstV2I GAAGAC 2 cut(s) 354, 841
BstXI CCANNNNNNTGG 1 cut(s) 22
BsuI GTATCC 1 cut(s) 661
BsuRI GGCC 2 cut(s) 1010, 1036
BtgI CCRYGG 1 cut(s) 983
BtgZI GCGATG 1 cut(s) 301
BtrI CACGTC 1 cut(s) 192
BtsCI GGATG 2 cut(s) 792, 937
BveI ACCTGC 1 cut(s) 918
Cac8I GCNNGC 3 cut(s) 42, 282, 1012
CaiI CAGNNNCTG 1 cut(s) 947
Cfr13I GGNCC 2 cut(s) 594, 944
CseI GACGC 1 cut(s) 502
Csp6I GTAC 3 cut(s) 139, 238, 643
CviAII CATG 2 cut(s) 71, 893
CviQI GTAC 3 cut(s) 139, 238, 643
DdeI CTNAG 2 cut(s) 386, 490
DpnI GATC 5 cut(s) 53, 82, 198, 527, 1044
DpnII GATC 5 cut(s) 51, 80, 196, 525, 1042
DrdI GACNNNNNNGTC 1 cut(s) 512
DseDI GACNNNNNNGTC 1 cut(s) 512
Eam1104I CTCTTC 2 cut(s) 35, 800
EarI CTCTTC 2 cut(s) 35, 800
EciI GGCGGA 1 cut(s) 680
Eco147I AGGCCT 2 cut(s) 1010, 1036
Eco47I GGWCC 2 cut(s) 594, 944
Eco88I CYCGRG 2 cut(s) 134, 357
EcoO109I RGGNCCY 1 cut(s) 944
EcoRII CCWGG 2 cut(s) 940, 1014
FaeI CATG 2 cut(s) 74, 896
FaiI YATR 9 cut(s) 72, 213, 254, 548, 563, 894, 1030, 1041, 1059
FatI CATG 2 cut(s) 70, 892
FbaI TGATCA 1 cut(s) 51
Fnu4HI GCNGC 2 cut(s) 157, 258
FokI GGATG 2 cut(s) 799, 924
Fsp4HI GCNGC 2 cut(s) 157, 258
FspBI CTAG 3 cut(s) 419, 503, 681
GluI GCNGC 2 cut(s) 157, 258
GsaI CCCAGC 1 cut(s) 824
HaeIII GGCC 2 cut(s) 1010, 1036
HapII CCGG 3 cut(s) 89, 335, 614
HgaI GACGC 1 cut(s) 502
Hin1II CATG 2 cut(s) 74, 896
HinfI GANTC 6 cut(s) 150, 230, 326, 506, 536, 793
HpaII CCGG 3 cut(s) 89, 335, 614
Hpy166II GTNNAC 2 cut(s) 141, 265
Hpy188I TCNGA 9 cut(s) 80, 127, 235, 325, 346, 395, 432, 541, 798
Hpy188III TCNNGA 5 cut(s) 134, 458, 597, 614, 681
Hpy8I GTNNAC 2 cut(s) 141, 265
Hpy99I CGWCG 1 cut(s) 518
HpyAV CCTTC 3 cut(s) 390, 686, 793
HpyCH4IV ACGT 3 cut(s) 191, 374, 1113
HpyCH4V TGCA 6 cut(s) 74, 218, 260, 927, 937, 961
HpyF3I CTNAG 2 cut(s) 386, 490
HpySE526I ACGT 3 cut(s) 191, 374, 1113
Hsp92II CATG 2 cut(s) 74, 896
Kpn2I TCCGGA 1 cut(s) 613
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 5 cut(s) 51, 80, 196, 525, 1042
LmnI GCTCC 3 cut(s) 136, 374, 616
Lsp1109I GCAGC 2 cut(s) 143, 244
LweI GCATC 1 cut(s) 946
MaeI CTAG 3 cut(s) 419, 503, 681
MaeII ACGT 3 cut(s) 191, 374, 1113
MaeIII GTNAC 1 cut(s) 623
MalI GATC 5 cut(s) 53, 82, 198, 527, 1044
MbiI CCGCTC 1 cut(s) 369
MboI GATC 5 cut(s) 51, 80, 196, 525, 1042
MhlI GDGCHC 1 cut(s) 613
MluCI AATT 3 cut(s) 119, 582, 631
MlyI GAGTC 2 cut(s) 500, 530
MmeI TCCRAC 1 cut(s) 764
MnlI CCTC 9 cut(s) 121, 211, 239, 331, 570, 748, 801, 1000, 1026
MroI TCCGGA 1 cut(s) 613
MseI TTAA 1 cut(s) 60
MslI CAYNNNNRTG 1 cut(s) 966
MspA1I CMGCKG 1 cut(s) 156
MspI CCGG 3 cut(s) 89, 335, 614
MspR9I CCNGG 3 cut(s) 89, 942, 1016
MvaI CCWGG 2 cut(s) 942, 1016
MvnI CGCG 1 cut(s) 769
NciI CCSGG 1 cut(s) 89
NdeII GATC 5 cut(s) 51, 80, 196, 525, 1042
NlaIII CATG 2 cut(s) 74, 896
NlaIV GGNNCC 4 cut(s) 132, 250, 595, 887
NmuCI GTSAC 1 cut(s) 623
NspI RCATGY 1 cut(s) 74
NspV TTCGAA 1 cut(s) 650
PaeR7I CTCGAG 1 cut(s) 357
PceI AGGCCT 2 cut(s) 1010, 1036
PfeI GAWTC 4 cut(s) 150, 230, 326, 793
PflMI CCANNNNNTGG 1 cut(s) 573
PfoI TCCNGGA 1 cut(s) 87
PkrI GCNGC 2 cut(s) 158, 259
PleI GAGTC 2 cut(s) 500, 530
PpsI GAGTC 2 cut(s) 500, 530
PpuMI RGGWCCY 1 cut(s) 944
PshBI ATTAAT 1 cut(s) 60
Psp5II RGGWCCY 1 cut(s) 944
Psp6I CCWGG 2 cut(s) 940, 1014
PspFI CCCAGC 1 cut(s) 820
PspGI CCWGG 2 cut(s) 940, 1014
PspN4I GGNNCC 4 cut(s) 132, 250, 595, 887
PspPI GGNCC 2 cut(s) 594, 944
PspPPI RGGWCCY 1 cut(s) 944
PspXI VCTCGAGB 1 cut(s) 357
PstI CTGCAG 1 cut(s) 262
PstNI CAGNNNCTG 1 cut(s) 947
PvuII CAGCTG 1 cut(s) 156
RsaI GTAC 3 cut(s) 140, 239, 644
RsaNI GTAC 3 cut(s) 139, 238, 643
RseI CAYNNNNRTG 1 cut(s) 966
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 2 cut(s) 157, 258
Sau3AI GATC 5 cut(s) 51, 80, 196, 525, 1042
Sau96I GGNCC 2 cut(s) 594, 944
ScaI AGTACT 2 cut(s) 239, 644
SchI GAGTC 2 cut(s) 500, 530
ScrFI CCNGG 3 cut(s) 89, 942, 1016
SduI GDGCHC 1 cut(s) 613
SfaNI GCATC 1 cut(s) 946
SfcI CTRYAG 3 cut(s) 258, 1048, 1100
Sfr274I CTCGAG 1 cut(s) 357
SfuI TTCGAA 1 cut(s) 650
SinI GGWCC 2 cut(s) 594, 944
SlaI CTCGAG 1 cut(s) 357
SmiMI CAYNNNNRTG 1 cut(s) 966
SmlI CTYRAG 3 cut(s) 241, 275, 357
SmoI CTYRAG 3 cut(s) 241, 275, 357
Sse9I AATT 3 cut(s) 119, 582, 631
SseBI AGGCCT 2 cut(s) 1010, 1036
SsiI CCGC 4 cut(s) 367, 665, 769, 833
SspMI CTAG 3 cut(s) 419, 503, 681
StuI AGGCCT 2 cut(s) 1010, 1036
StyD4I CCNGG 3 cut(s) 87, 940, 1014
TaiI ACGT 3 cut(s) 194, 377, 1116
TaqI TCGA 3 cut(s) 358, 516, 650
TasI AATT 3 cut(s) 119, 582, 631
TatI WGTACW 3 cut(s) 138, 237, 642
TfiI GAWTC 4 cut(s) 150, 230, 326, 793
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TseFI GTSAC 1 cut(s) 623
TseI GCWGC 2 cut(s) 156, 257
Tsp45I GTSAC 1 cut(s) 623
TspDTI ATGAA 3 cut(s) 200, 304, 426
TspGWI ACGGA 2 cut(s) 413, 686
Van91I CCANNNNNTGG 1 cut(s) 573
VpaK11BI GGWCC 2 cut(s) 594, 944
VspI ATTAAT 1 cut(s) 60
XapI RAATTY 1 cut(s) 631
XbaI TCTAGA 1 cut(s) 680
XceI RCATGY 1 cut(s) 74
XcmI CCANNNNNNNNNTGG 1 cut(s) 896
XhoI CTCGAG 1 cut(s) 357
XspI CTAG 3 cut(s) 419, 503, 681
ZrmI AGTACT 2 cut(s) 239, 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.