Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0015023

Physical Location & Seq

Genomic Coordinates Forward (+)

85053002 .. 85054402

Gene Structure 1401 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG628500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGTTTCAAAGAACCATCTTCTTGCTTCTCTTCTTCTTGCTCGCTTCTTTGATCACCATTAATCCCACACATGCAATCCGATCATTCCCGGAAAGAGTAGGGTTTTCCATCTCGCACCAATTCTCGGAGGCTCCCGAGTACACCAATGGATTCAGCTGCCCTGTTTTGGGTGGAGACAGCTTTCCAAAGACGCGTGATCCCTCTCTTGTTCATATTGCAATGACTATTGATTCCGAGTACTTGAGAGGCACCATAGCTGCAGTCCACTCTGTTCTCAAGCACGCTTCTTGCCCTGAAAACACTTTCTTCCACTTCATCGCCTCGGATTCCAGTCCGGTGAGTTCCGAAGACCTTACTCGAGTTGTCCGCTCCACGTTTCCTTCTCTCAGTTTCAGAGTTTATCAGTTCAAGGAGAGCCTAGTCCGTCATCTGATTTCATCTTCCATTCGTCAAGCTCTTGATAACCCCTTGAACTACGCAAGAAGCTACTTGGCCGATTTGCTAGACTCCTGCGTCGAGCGTGTGATCTATTTAGACTCTGATGTTATAGTTGTTGATGATATAGCCAAGCTGTGGAGGATAACTTTATCAGGGTCCAGAGTTATTGGTGCTCCGGAGTATTGTCACGCAAATTTCACCAAGTACTTTTCGAATGGATTTTGGGCGGATACGGAAATGTCTAGAGTTTTTGAAGGGAAAAGTGCTTGTTATTTCAATACAGGTGTGATGGTGATGGACTTGGTGAGATGGAGAGAGGGTGATTACACGCGGAAGATTGAGAGTTGGATGGAGATTCAGAAGGAGAAGAGGATTTACGAGCTGGGTTCTCTACCGCCTTTTTTGTTGGTCTTCGGTGGAGATGTAGAGCCTATTCACCACAGATGGAACCAACATGGGCTTGGTGGTGATAATGTGGTGAATAGTTGCAGGTCTTTGCATCCAGGTCCTGTGAGCTTGTTGCATTGGAGTGGGAAAGGGAAGCCATGGTCAAGGCTTGATTTGGGAGAGGCTTGCCTGGTTGATTTTCTATGGAGGCCTTATGATCTCTACAGACACCATGATCATCATCTTCACCACCACCATCATCAACACAGTCCACAGCTATTGGACGTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0012505 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0047262 GO:0050896 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

372

Amino Acids

42.6

Weight (kDa)

6.53

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	71 - 331	8.7e-55	Glycosyl transferase family 8
Glyco_transf_24	PF18404	158 - 254	9.1e-06	Glucosyltransferase 24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28340
fragaria_vesca	FvH4_6g49810
malus_domestica	MD17G1042500.v1.1
prunus_persica	Prupe.3G276500_v2.0.a1
pyrus_communis	pycom111g03210 pycom17g03810
rosa_chinensis	RchiOBHm_Chr2g0169951
rosa_laevigata	RLG00000021913
rosa_multiflora	Rmu_co8421609.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081720
rosa_rugosa	Rorug02G0544600
rosa_samantha	Rh2AG616700 Rh2BG628500 Rh2CG597800 Rh2DG639500
rosa_wichuraiana	Rw2G051080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	512
Acc36I	ACCTGC	1 cut(s)	918
AccB1I	GGYRCC	1 cut(s)	248
AccB7I	CCANNNNNTGG	1 cut(s)	573
AccBSI	CCGCTC	1 cut(s)	369
AccII	CGCG	2 cut(s)	193, 769
AccIII	TCCGGA	1 cut(s)	613
AciI	CCGC	4 cut(s)	367, 665, 769, 833
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	492
AcsI	RAATTY	1 cut(s)	631
AfaI	GTAC	3 cut(s)	140, 239, 644
AfiI	CCNNNNNNNGG	4 cut(s)	124, 166, 167, 573
AflIII	ACRYGT	1 cut(s)	191
AgsI	TTSAA	5 cut(s)	8, 409, 472, 692, 715
AjnI	CCWGG	2 cut(s)	940, 1014
AluBI	AGCT	9 cut(s)	156, 180, 257, 455, 486, 571, 820, 954, 1102
AluI	AGCT	9 cut(s)	156, 180, 257, 455, 486, 571, 820, 954, 1102
Alw21I	GWGCWC	1 cut(s)	613
Alw26I	GTCTC	1 cut(s)	168
AlwI	GGATC	1 cut(s)	191
AlwNI	CAGNNNCTG	1 cut(s)	947
Ama87I	CYCGRG	2 cut(s)	134, 357
Aor13HI	TCCGGA	1 cut(s)	613
AoxI	GGCC	2 cut(s)	492, 1034
ApeKI	GCWGC	2 cut(s)	156, 257
ApoI	RAATTY	1 cut(s)	631
AseI	ATTAAT	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	594, 944
AsuC2I	CCSGG	1 cut(s)	89
AsuII	TTCGAA	1 cut(s)	650
AvaI	CYCGRG	2 cut(s)	134, 357
AvaII	GGWCC	2 cut(s)	594, 944
BanI	GGYRCC	1 cut(s)	248
BarI	GAAGNNNNNNTAC	2 cut(s)	797, 829
BbsI	GAAGAC	2 cut(s)	354, 841
Bbv12I	GWGCWC	1 cut(s)	613
BbvI	GCAGC	2 cut(s)	143, 244
BccI	CCATC	8 cut(s)	23, 116, 721, 727, 741, 781, 876, 1089
BciT130I	CCWGG	2 cut(s)	942, 1016
BciVI	GTATCC	1 cut(s)	661
BclI	TGATCA	2 cut(s)	51, 1060
BcnI	CCSGG	1 cut(s)	89
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	3 cut(s)	419, 503, 681
BfmI	CTRYAG	2 cut(s)	258, 1048
BfuAI	ACCTGC	1 cut(s)	918
BfuI	GTATCC	1 cut(s)	661
BisI	GCNGC	2 cut(s)	157, 258
BlsI	GCNGC	2 cut(s)	158, 259
BmcAI	AGTACT	2 cut(s)	239, 644
Bme1390I	CCNGG	3 cut(s)	89, 942, 1016
Bme18I	GGWCC	2 cut(s)	594, 944
BmeT110I	CYCGRG	2 cut(s)	134, 357
BmgT120I	GGNCC	2 cut(s)	594, 944
BmiI	GGNNCC	4 cut(s)	132, 250, 595, 887
BmrFI	CCNGG	3 cut(s)	89, 942, 1016
BmsI	GCATC	1 cut(s)	946
BpiI	GAAGAC	2 cut(s)	354, 841
Bpu14I	TTCGAA	1 cut(s)	650
BpuEI	CTTGAG	2 cut(s)	260, 262
BpuMI	CCSGG	1 cut(s)	89
BsaBI	GATNNNNATC	1 cut(s)	1065
BsaJI	CCNNGG	2 cut(s)	321, 983
BsaWI	WCCGGW	2 cut(s)	334, 613
BsaXI	ACNNNNNCTCC	2 cut(s)	742, 772
Bsc4I	CCNNNNNNNGG	4 cut(s)	124, 166, 167, 573
Bse1I	ACTGG	1 cut(s)	330
Bse3DI	GCAATG	1 cut(s)	225
Bse8I	GATNNNNATC	1 cut(s)	1065
BseAI	TCCGGA	1 cut(s)	613
BseBI	CCWGG	2 cut(s)	942, 1016
BseDI	CCNNGG	2 cut(s)	321, 983
BseGI	GGATG	2 cut(s)	792, 937
BseJI	GATNNNNATC	1 cut(s)	1065
BseLI	CCNNNNNNNGG	4 cut(s)	124, 166, 167, 573
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	400
BseNI	ACTGG	1 cut(s)	330
BseXI	GCAGC	2 cut(s)	143, 244
BseYI	CCCAGC	1 cut(s)	820
Bsh1236I	CGCG	2 cut(s)	193, 769
BshFI	GGCC	2 cut(s)	494, 1036
BshNI	GGYRCC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	613
BsiHKCI	CYCGRG	2 cut(s)	134, 357
BsiSI	CCGG	3 cut(s)	89, 335, 614
BslI	CCNNNNNNNGG	4 cut(s)	124, 166, 167, 573
BsmAI	GTCTC	1 cut(s)	168
BsnI	GGCC	2 cut(s)	494, 1036
BsoBI	CYCGRG	2 cut(s)	134, 357
Bsp119I	TTCGAA	1 cut(s)	650
Bsp1286I	GDGCHC	1 cut(s)	613
Bsp13I	TCCGGA	1 cut(s)	613
Bsp143I	GATC	6 cut(s)	51, 80, 196, 525, 1042, 1060
Bsp19I	CCATGG	1 cut(s)	983
BspACI	CCGC	4 cut(s)	367, 665, 769, 833
BspANI	GGCC	2 cut(s)	494, 1036
BspCNI	CTCAG	1 cut(s)	399
BspEI	TCCGGA	1 cut(s)	613
BspFNI	CGCG	2 cut(s)	193, 769
BspLI	GGNNCC	4 cut(s)	132, 250, 595, 887
BspMAI	CTGCAG	1 cut(s)	262
BspMI	ACCTGC	1 cut(s)	918
BspPI	GGATC	1 cut(s)	191
BspT104I	TTCGAA	1 cut(s)	650
BspT107I	GGYRCC	1 cut(s)	248
BsrBI	CCGCTC	1 cut(s)	369
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	330
BssECI	CCNNGG	2 cut(s)	321, 983
BssMI	GATC	6 cut(s)	51, 80, 196, 525, 1042, 1060
BssT1I	CCWWGG	1 cut(s)	983
Bst2UI	CCWGG	2 cut(s)	942, 1016
Bst4CI	ACNGT	1 cut(s)	1094
Bst6I	CTCTTC	2 cut(s)	35, 800
BstBI	TTCGAA	1 cut(s)	650
BstC8I	GCNNGC	3 cut(s)	42, 282, 1012
BstDEI	CTNAG	1 cut(s)	386
BstDSI	CCRYGG	1 cut(s)	983
BstF5I	GGATG	2 cut(s)	792, 937
BstFNI	CGCG	2 cut(s)	193, 769
BstKTI	GATC	6 cut(s)	54, 83, 199, 528, 1045, 1063
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	6 cut(s)	51, 80, 196, 525, 1042, 1060
BstNI	CCWGG	2 cut(s)	942, 1016
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	3 cut(s)	87, 940, 1014
BstSFI	CTRYAG	2 cut(s)	258, 1048
BstUI	CGCG	2 cut(s)	193, 769
BstV1I	GCAGC	2 cut(s)	143, 244
BstV2I	GAAGAC	2 cut(s)	354, 841
BsuI	GTATCC	1 cut(s)	661
BsuRI	GGCC	2 cut(s)	494, 1036
BtgI	CCRYGG	1 cut(s)	983
BtgZI	GCGATG	1 cut(s)	301
BtsCI	GGATG	2 cut(s)	792, 937
BveI	ACCTGC	1 cut(s)	918
Cac8I	GCNNGC	3 cut(s)	42, 282, 1012
CaiI	CAGNNNCTG	1 cut(s)	947
Cfr13I	GGNCC	2 cut(s)	594, 944
CseI	GACGC	2 cut(s)	199, 502
Csp6I	GTAC	3 cut(s)	139, 238, 643
CspCI	CAANNNNNGTGG	1 cut(s)	1086
CviAII	CATG	4 cut(s)	71, 893, 984, 1058
CviQI	GTAC	3 cut(s)	139, 238, 643
DdeI	CTNAG	1 cut(s)	386
DpnI	GATC	6 cut(s)	53, 82, 198, 527, 1044, 1062
DpnII	GATC	6 cut(s)	51, 80, 196, 525, 1042, 1060
DrdI	GACNNNNNNGTC	1 cut(s)	512
DseDI	GACNNNNNNGTC	1 cut(s)	512
EaeI	YGGCCR	1 cut(s)	492
Eam1104I	CTCTTC	2 cut(s)	35, 800
EarI	CTCTTC	2 cut(s)	35, 800
EciI	GGCGGA	1 cut(s)	680
Eco130I	CCWWGG	1 cut(s)	983
Eco147I	AGGCCT	1 cut(s)	1036
Eco47I	GGWCC	2 cut(s)	594, 944
Eco88I	CYCGRG	2 cut(s)	134, 357
EcoO109I	RGGNCCY	1 cut(s)	944
EcoRII	CCWGG	2 cut(s)	940, 1014
EcoT14I	CCWWGG	1 cut(s)	983
ErhI	CCWWGG	1 cut(s)	983
FaeI	CATG	4 cut(s)	74, 896, 987, 1061
FatI	CATG	4 cut(s)	70, 892, 983, 1057
FbaI	TGATCA	2 cut(s)	51, 1060
Fnu4HI	GCNGC	2 cut(s)	157, 258
FokI	GGATG	2 cut(s)	799, 924
Fsp4HI	GCNGC	2 cut(s)	157, 258
FspBI	CTAG	3 cut(s)	419, 503, 681
GluI	GCNGC	2 cut(s)	157, 258
GsaI	CCCAGC	1 cut(s)	824
HaeIII	GGCC	2 cut(s)	494, 1036
HapII	CCGG	3 cut(s)	89, 335, 614
HgaI	GACGC	2 cut(s)	199, 502
Hin1II	CATG	4 cut(s)	74, 896, 987, 1061
HinfI	GANTC	6 cut(s)	150, 230, 326, 506, 536, 793
HpaII	CCGG	3 cut(s)	89, 335, 614
Hpy166II	GTNNAC	3 cut(s)	141, 265, 1097
Hpy188I	TCNGA	9 cut(s)	80, 127, 235, 325, 346, 395, 432, 541, 798
Hpy188III	TCNNGA	5 cut(s)	134, 458, 597, 614, 681
Hpy8I	GTNNAC	3 cut(s)	141, 265, 1097
Hpy99I	CGWCG	1 cut(s)	518
HpyAV	CCTTC	3 cut(s)	390, 686, 793
HpyCH4III	ACNGT	1 cut(s)	1094
HpyCH4IV	ACGT	2 cut(s)	374, 1110
HpyCH4V	TGCA	6 cut(s)	74, 218, 260, 927, 937, 961
HpyF3I	CTNAG	1 cut(s)	386
HpySE526I	ACGT	2 cut(s)	374, 1110
Hsp92II	CATG	4 cut(s)	74, 896, 987, 1061
Kpn2I	TCCGGA	1 cut(s)	613
Ksp22I	TGATCA	2 cut(s)	51, 1060
Kzo9I	GATC	6 cut(s)	51, 80, 196, 525, 1042, 1060
LmnI	GCTCC	3 cut(s)	136, 374, 616
Lsp1109I	GCAGC	2 cut(s)	143, 244
LweI	GCATC	1 cut(s)	946
MaeI	CTAG	3 cut(s)	419, 503, 681
MaeII	ACGT	2 cut(s)	374, 1110
MaeIII	GTNAC	1 cut(s)	623
MalI	GATC	6 cut(s)	53, 82, 198, 527, 1044, 1062
MbiI	CCGCTC	1 cut(s)	369
MboI	GATC	6 cut(s)	51, 80, 196, 525, 1042, 1060
MhlI	GDGCHC	1 cut(s)	613
MluCI	AATT	2 cut(s)	119, 631
MluI	ACGCGT	1 cut(s)	191
MlyI	GAGTC	2 cut(s)	500, 530
MmeI	TCCRAC	1 cut(s)	764
MnlI	CCTC	9 cut(s)	121, 211, 239, 331, 570, 748, 801, 1000, 1026
MroI	TCCGGA	1 cut(s)	613
MseI	TTAA	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	966
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	3 cut(s)	89, 335, 614
MspR9I	CCNGG	3 cut(s)	89, 942, 1016
MvaI	CCWGG	2 cut(s)	942, 1016
MvnI	CGCG	2 cut(s)	193, 769
NciI	CCSGG	1 cut(s)	89
NcoI	CCATGG	1 cut(s)	983
NdeII	GATC	6 cut(s)	51, 80, 196, 525, 1042, 1060
NlaIII	CATG	4 cut(s)	74, 896, 987, 1061
NlaIV	GGNNCC	4 cut(s)	132, 250, 595, 887
NmuCI	GTSAC	1 cut(s)	623
NspI	RCATGY	1 cut(s)	74
NspV	TTCGAA	1 cut(s)	650
PaeR7I	CTCGAG	1 cut(s)	357
PceI	AGGCCT	1 cut(s)	1036
PfeI	GAWTC	4 cut(s)	150, 230, 326, 793
PflMI	CCANNNNNTGG	1 cut(s)	573
PfoI	TCCNGGA	1 cut(s)	87
PkrI	GCNGC	2 cut(s)	158, 259
PleI	GAGTC	2 cut(s)	500, 530
PpsI	GAGTC	2 cut(s)	500, 530
PpuMI	RGGWCCY	1 cut(s)	944
PshBI	ATTAAT	1 cut(s)	60
Psp5II	RGGWCCY	1 cut(s)	944
Psp6I	CCWGG	2 cut(s)	940, 1014
PspFI	CCCAGC	1 cut(s)	820
PspGI	CCWGG	2 cut(s)	940, 1014
PspN4I	GGNNCC	4 cut(s)	132, 250, 595, 887
PspPI	GGNCC	2 cut(s)	594, 944
PspPPI	RGGWCCY	1 cut(s)	944
PspXI	VCTCGAGB	1 cut(s)	357
PstI	CTGCAG	1 cut(s)	262
PstNI	CAGNNNCTG	1 cut(s)	947
PvuII	CAGCTG	1 cut(s)	156
RsaI	GTAC	3 cut(s)	140, 239, 644
RsaNI	GTAC	3 cut(s)	139, 238, 643
RseI	CAYNNNNRTG	1 cut(s)	966
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	2 cut(s)	157, 258
Sau3AI	GATC	6 cut(s)	51, 80, 196, 525, 1042, 1060
Sau96I	GGNCC	2 cut(s)	594, 944
ScaI	AGTACT	2 cut(s)	239, 644
SchI	GAGTC	2 cut(s)	500, 530
ScrFI	CCNGG	3 cut(s)	89, 942, 1016
SduI	GDGCHC	1 cut(s)	613
SfaNI	GCATC	1 cut(s)	946
SfcI	CTRYAG	2 cut(s)	258, 1048
Sfr274I	CTCGAG	1 cut(s)	357
SfuI	TTCGAA	1 cut(s)	650
SinI	GGWCC	2 cut(s)	594, 944
SlaI	CTCGAG	1 cut(s)	357
SmiMI	CAYNNNNRTG	1 cut(s)	966
SmlI	CTYRAG	3 cut(s)	241, 275, 357
SmoI	CTYRAG	3 cut(s)	241, 275, 357
Sse9I	AATT	2 cut(s)	119, 631
SseBI	AGGCCT	1 cut(s)	1036
SsiI	CCGC	4 cut(s)	367, 665, 769, 833
SspMI	CTAG	3 cut(s)	419, 503, 681
StuI	AGGCCT	1 cut(s)	1036
StyD4I	CCNGG	3 cut(s)	87, 940, 1014
StyI	CCWWGG	1 cut(s)	983
TaaI	ACNGT	1 cut(s)	1094
TaiI	ACGT	2 cut(s)	377, 1113
TaqI	TCGA	3 cut(s)	358, 516, 650
TasI	AATT	2 cut(s)	119, 631
TatI	WGTACW	3 cut(s)	138, 237, 642
TfiI	GAWTC	4 cut(s)	150, 230, 326, 793
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TseFI	GTSAC	1 cut(s)	623
TseI	GCWGC	2 cut(s)	156, 257
Tsp45I	GTSAC	1 cut(s)	623
TspDTI	ATGAA	3 cut(s)	200, 304, 426
TspGWI	ACGGA	2 cut(s)	413, 686
Van91I	CCANNNNNTGG	1 cut(s)	573
VpaK11BI	GGWCC	2 cut(s)	594, 944
VspI	ATTAAT	1 cut(s)	60
XapI	RAATTY	1 cut(s)	631
XbaI	TCTAGA	1 cut(s)	680
XceI	RCATGY	1 cut(s)	74
XcmI	CCANNNNNNNNNTGG	1 cut(s)	896
XhoI	CTCGAG	1 cut(s)	357
XspI	CTAG	3 cut(s)	419, 503, 681
ZrmI	AGTACT	2 cut(s)	239, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.