Rorug02G0544600

Belongs to the glycosyltransferase 8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0015023
Physical Location & Seq
Reverse (-)
67386765 .. 67388461
1697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0544600.1

Sequence Viewer

Length: 1086 bp
ATGGAAATGAATGATGAAATCAAGACTATCTTCAAGATAGGCCTCTCGGTCCTGGCATCTCTAAGCTACACCTATTTCATATCTTCTAAGATCCCCCAAGGCAAACTCAGATTCTTCTCCCTCCTTCCTATCTTCTACCTATTCTTCATCCTCCCTCTATCTCTATCTACAGCTCTCCCCGCCGGAGTTATTTCCTTGTTCGTCACCTGGGTTGGTACCTTCAAGCTCCTCCTCTTCTCCTTTGGGTCGGGCCAGCTTTCGTCTCAACCACCAAAGTCTTTCCTCCACTTCATCTTCATTGCTTGCCTCCCAATCAAAACCCAAAGCTCAAACCAGAGAAGCCCCGAAAAGTCGTCCCCAGTTTCAGGGAAACCACCCAAAGTCCCTCTGAATTTTCCAACCAAAGTCGTGCTTTTTTCTATTTTGGTGGCTCTGACCGACTACAAACATTACTTGCACCCCAAGCTTTTGTTAGTCCAATATGGCTGCATGTTGTACTTTTTCGTGGACATAATCGTCGGCTCCTGCAATGTTCTCATGCGAGCGGCTCTTGGGATCGAGCTCGAATCACCGTCCGATGAGCCGTACCTCTCGACATCGCTGCAAGATTTCTGGGGCCGTAGGTGGAACCTCATGATAACGAACATTCTGCGCCACACCATATACAAACCCGTACGGTCAGCCATGGCGGCCTTCGTAGGGAGCGAGTGGGCGCAACTACCGGCCGTGTTGGCCGTCTTTCTAGTGTCGGGTTTAATGCACGAGCTCATATATTACTACATGACCCACGTGACTCCCACGTGGGAGGTCACGCTGTTCTTCATTCTTCATGGAGTGTGTTTGGTGGTGGAGGTCGGTATGAAAAAGGTTTTAGCTCCAAAGTGGCGGTGGCATTGGGCTGTGTCTGTCCCGATGACACTCGGCTTCGTCGCTGTCACCGCCATTTGGCTGTTCTTCCCGCCGTTGGTGAGGAATGGCGTGGATGCAAAGGCGATCGAAGAGTGCAAGGAATTATTAGAATTCATAAAGGAAAAGTTAAAATTGGATTGTTTGGTTTCATGGGCATGTCTTTCCTCGGGTCATTAG

Protein Analysis

361

Amino Acids

40.81

Weight (kDa)

9.13

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MBOAT_2 PF13813 193 - 276 1.7e-18 Membrane bound O-acyl transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015023)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28340
fragaria_vesca FvH4_6g49810
malus_domestica MD17G1042500.v1.1
prunus_persica Prupe.3G276500_v2.0.a1
pyrus_communis pycom111g03210 pycom17g03810
rosa_chinensis RchiOBHm_Chr2g0169951
rosa_laevigata RLG00000021913
rosa_multiflora Rmu_co8421609.1_g000001
rosa_roxburghii Rroxscaffold_2G00081720
rosa_rugosa Rorug02G0544600
rosa_samantha Rh2AG616700 Rh2BG628500 Rh2CG597800 Rh2DG639500
rosa_wichuraiana Rw2G051080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 515
Acc65I GGTACC 1 cut(s) 215
AccB1I GGYRCC 1 cut(s) 215
AccBSI CCGCTC 1 cut(s) 545
AciI CCGC 6 cut(s) 180, 545, 689, 886, 939, 959
AclWI GGATC 2 cut(s) 85, 563
AcoI YGGCCR 2 cut(s) 723, 732
AcsI RAATTY 2 cut(s) 391, 1019
AcvI CACGTG 2 cut(s) 790, 801
AfaI GTAC 4 cut(s) 217, 497, 587, 675
AfiI CCNNNNNNNGG 4 cut(s) 365, 699, 945, 964
AgsI TTSAA 2 cut(s) 34, 223
AjnI CCWGG 2 cut(s) 51, 206
AluBI AGCT 9 cut(s) 66, 173, 226, 256, 327, 466, 562, 766, 875
AluI AGCT 9 cut(s) 66, 173, 226, 256, 327, 466, 562, 766, 875
Alw21I GWGCWC 2 cut(s) 564, 768
Alw26I GTCTC 1 cut(s) 267
AlwI GGATC 2 cut(s) 85, 563
Ama87I CYCGRG 1 cut(s) 1075
AoxI GGCC 6 cut(s) 40, 250, 616, 690, 723, 732
ApeKI GCWGC 2 cut(s) 486, 601
ApoI RAATTY 2 cut(s) 391, 1019
Asp718I GGTACC 1 cut(s) 215
AspLEI GCGC 2 cut(s) 654, 715
AspS9I GGNCC 3 cut(s) 49, 250, 616
AsuHPI GGTGA 4 cut(s) 196, 561, 928, 979
AvaI CYCGRG 1 cut(s) 1075
AvaII GGWCC 1 cut(s) 49
BanI GGYRCC 1 cut(s) 215
BanII GRGCYC 2 cut(s) 564, 768
BauI CACGAG 1 cut(s) 761
BbrPI CACGTG 2 cut(s) 790, 801
Bbv12I GWGCWC 2 cut(s) 564, 768
BbvI GCAGC 2 cut(s) 473, 588
BceAI ACGGC 5 cut(s) 568, 603, 710, 719, 946
BcgI CGANNNNNNTGC 4 cut(s) 583, 617, 631, 665
BciT130I CCWGG 2 cut(s) 53, 208
BcoDI GTCTC 1 cut(s) 267
BfaI CTAG 1 cut(s) 743
BfmI CTRYAG 1 cut(s) 168
BglI GCCNNNNNGGC 2 cut(s) 689, 731
BisI GCNGC 4 cut(s) 487, 546, 602, 690
BlsI GCNGC 4 cut(s) 488, 547, 603, 691
Bme1390I CCNGG 2 cut(s) 53, 208
Bme18I GGWCC 1 cut(s) 49
BmeT110I CYCGRG 1 cut(s) 1075
BmgT120I GGNCC 3 cut(s) 49, 250, 616
BmiI GGNNCC 4 cut(s) 217, 523, 617, 629
BmrFI CCNGG 2 cut(s) 53, 208
BmrI ACTGGG 1 cut(s) 353
BmsI GCATC 2 cut(s) 65, 973
BmuI ACTGGG 1 cut(s) 353
BsaAI YACGTR 2 cut(s) 790, 801
BsaJI CCNNGG 4 cut(s) 97, 207, 684, 1074
Bsc4I CCNNNNNNNGG 4 cut(s) 365, 699, 945, 964
Bse118I RCCGGY 1 cut(s) 721
Bse1I ACTGG 1 cut(s) 359
Bse3DI GCAATG 2 cut(s) 297, 535
BseBI CCWGG 2 cut(s) 53, 208
BseDI CCNNGG 4 cut(s) 97, 207, 684, 1074
BseGI GGATG 2 cut(s) 147, 988
BseLI CCNNNNNNNGG 4 cut(s) 365, 699, 945, 964
BseMI GCAATG 2 cut(s) 297, 535
BseMII CTCAG 1 cut(s) 121
BseNI ACTGG 1 cut(s) 359
BseRI GAGGAG 2 cut(s) 218, 221
BseX3I CGGCCG 1 cut(s) 723
BseXI GCAGC 2 cut(s) 473, 588
Bsh1285I CGRYCG 2 cut(s) 726, 996
BshFI GGCC 6 cut(s) 42, 252, 618, 692, 725, 734
BshNI GGYRCC 1 cut(s) 215
BsiEI CGRYCG 2 cut(s) 726, 996
BsiHKAI GWGCWC 2 cut(s) 564, 768
BsiHKCI CYCGRG 1 cut(s) 1075
BsiSI CCGG 2 cut(s) 183, 722
BsiWI CGTACG 1 cut(s) 673
BslFI GGGAC 3 cut(s) 340, 368, 893
BslI CCNNNNNNNGG 4 cut(s) 365, 699, 945, 964
BsmAI GTCTC 1 cut(s) 267
BsmBI CGTCTC 1 cut(s) 267
BsmFI GGGAC 3 cut(s) 340, 368, 893
BsnI GGCC 6 cut(s) 42, 252, 618, 692, 725, 734
BsoBI CYCGRG 1 cut(s) 1075
Bsp1286I GDGCHC 2 cut(s) 564, 768
Bsp143I GATC 3 cut(s) 90, 555, 993
Bsp19I CCATGG 1 cut(s) 684
BspACI CCGC 6 cut(s) 180, 545, 689, 886, 939, 959
BspANI GGCC 6 cut(s) 42, 252, 618, 692, 725, 734
BspCNI CTCAG 1 cut(s) 120
BspHI TCATGA 1 cut(s) 633
BspLI GGNNCC 4 cut(s) 217, 523, 617, 629
BspPI GGATC 2 cut(s) 85, 563
BspT107I GGYRCC 1 cut(s) 215
BsrBI CCGCTC 1 cut(s) 545
BsrDI GCAATG 2 cut(s) 297, 535
BsrFI RCCGGY 1 cut(s) 721
BsrI ACTGG 1 cut(s) 359
BssAI RCCGGY 1 cut(s) 721
BssECI CCNNGG 4 cut(s) 97, 207, 684, 1074
BssMI GATC 3 cut(s) 90, 555, 993
BssSI CACGAG 1 cut(s) 761
BssT1I CCWWGG 2 cut(s) 97, 684
Bst2BI CACGAG 1 cut(s) 761
Bst2UI CCWGG 2 cut(s) 53, 208
Bst4CI ACNGT 2 cut(s) 573, 678
Bst6I CTCTTC 2 cut(s) 239, 993
BstBAI YACGTR 2 cut(s) 790, 801
BstC8I GCNNGC 3 cut(s) 254, 304, 543
BstDEI CTNAG 3 cut(s) 62, 87, 107
BstDSI CCRYGG 1 cut(s) 684
BstF5I GGATG 2 cut(s) 147, 988
BstHHI GCGC 2 cut(s) 654, 715
BstKTI GATC 3 cut(s) 93, 558, 996
BstMAI GTCTC 1 cut(s) 267
BstMBI GATC 3 cut(s) 90, 555, 993
BstMCI CGRYCG 2 cut(s) 726, 996
BstMWI GCNNNNNNNGC 5 cut(s) 179, 463, 689, 731, 938
BstNI CCWGG 2 cut(s) 53, 208
BstNSI RCATGY 2 cut(s) 493, 1068
BstSCI CCNGG 2 cut(s) 51, 206
BstSFI CTRYAG 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 473, 588
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
BstZI CGGCCG 1 cut(s) 723
BsuRI GGCC 6 cut(s) 42, 252, 618, 692, 725, 734
BtgI CCRYGG 1 cut(s) 684
BtgZI GCGATG 1 cut(s) 582
BtsCI GGATG 2 cut(s) 147, 988
Cac8I GCNNGC 3 cut(s) 254, 304, 543
CciI TCATGA 1 cut(s) 633
CfoI GCGC 2 cut(s) 654, 715
Cfr10I RCCGGY 1 cut(s) 721
Cfr13I GGNCC 3 cut(s) 49, 250, 616
Csp6I GTAC 4 cut(s) 216, 496, 586, 674
CviAII CATG 8 cut(s) 490, 538, 634, 685, 781, 830, 1059, 1065
CviQI GTAC 4 cut(s) 216, 496, 586, 674
DdeI CTNAG 3 cut(s) 62, 87, 107
DpnI GATC 3 cut(s) 92, 557, 995
DpnII GATC 3 cut(s) 90, 555, 993
DrdI GACNNNNNNGTC 1 cut(s) 515
DseDI GACNNNNNNGTC 1 cut(s) 515
EaeI YGGCCR 2 cut(s) 723, 732
EagI CGGCCG 1 cut(s) 723
Eam1104I CTCTTC 2 cut(s) 239, 993
EarI CTCTTC 2 cut(s) 239, 993
Ecl136II GAGCTC 2 cut(s) 562, 766
EclXI CGGCCG 1 cut(s) 723
Eco130I CCWWGG 2 cut(s) 97, 684
Eco147I AGGCCT 1 cut(s) 42
Eco24I GRGCYC 2 cut(s) 564, 768
Eco47I GGWCC 1 cut(s) 49
Eco52I CGGCCG 1 cut(s) 723
Eco53kI GAGCTC 2 cut(s) 562, 766
Eco72I CACGTG 2 cut(s) 790, 801
Eco88I CYCGRG 1 cut(s) 1075
EcoICRI GAGCTC 2 cut(s) 562, 766
EcoRI GAATTC 1 cut(s) 1019
EcoRII CCWGG 2 cut(s) 51, 206
EcoT14I CCWWGG 2 cut(s) 97, 684
EcoT38I GRGCYC 2 cut(s) 564, 768
ErhI CCWWGG 2 cut(s) 97, 684
Esp3I CGTCTC 1 cut(s) 267
FaeI CATG 8 cut(s) 493, 541, 637, 688, 784, 833, 1062, 1068
FalI AAGNNNNNCTT 4 cut(s) 14, 46, 396, 428
FaqI GGGAC 3 cut(s) 340, 368, 893
FatI CATG 8 cut(s) 489, 537, 633, 684, 780, 829, 1058, 1064
FauI CCCGC 2 cut(s) 187, 966
Fnu4HI GCNGC 4 cut(s) 487, 546, 602, 690
FokI GGATG 2 cut(s) 134, 995
FriOI GRGCYC 2 cut(s) 564, 768
Fsp4HI GCNGC 4 cut(s) 487, 546, 602, 690
FspBI CTAG 1 cut(s) 743
GlaI GCGC 2 cut(s) 653, 714
GluI GCNGC 4 cut(s) 487, 546, 602, 690
HaeIII GGCC 6 cut(s) 42, 252, 618, 692, 725, 734
HapII CCGG 2 cut(s) 183, 722
HhaI GCGC 2 cut(s) 654, 715
Hin1II CATG 8 cut(s) 493, 541, 637, 688, 784, 833, 1062, 1068
Hin6I GCGC 2 cut(s) 652, 713
HinP1I GCGC 2 cut(s) 652, 713
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 3 cut(s) 111, 566, 793
HpaII CCGG 2 cut(s) 183, 722
HphI GGTGA 4 cut(s) 196, 561, 928, 979
Hpy166II GTNNAC 1 cut(s) 508
Hpy188I TCNGA 4 cut(s) 110, 390, 435, 577
Hpy188III TCNNGA 5 cut(s) 22, 34, 592, 634, 910
Hpy8I GTNNAC 1 cut(s) 508
Hpy99I CGWCG 2 cut(s) 521, 932
HpyAV CCTTC 3 cut(s) 134, 229, 703
HpyCH4III ACNGT 2 cut(s) 573, 678
HpyCH4IV ACGT 2 cut(s) 789, 800
HpyCH4V TGCA 7 cut(s) 457, 489, 528, 604, 760, 986, 1005
HpyF10VI GCNNNNNNNGC 5 cut(s) 179, 463, 689, 731, 938
HpyF3I CTNAG 3 cut(s) 62, 87, 107
HpySE526I ACGT 2 cut(s) 789, 800
Hsp92II CATG 8 cut(s) 493, 541, 637, 688, 784, 833, 1062, 1068
HspAI GCGC 2 cut(s) 652, 713
KpnI GGTACC 1 cut(s) 219
Kzo9I GATC 3 cut(s) 90, 555, 993
LmnI GCTCC 4 cut(s) 231, 527, 702, 880
Lsp1109I GCAGC 2 cut(s) 473, 588
LweI GCATC 2 cut(s) 65, 973
MaeI CTAG 1 cut(s) 743
MaeII ACGT 2 cut(s) 789, 800
MaeIII GTNAC 4 cut(s) 202, 790, 808, 934
MalI GATC 3 cut(s) 92, 557, 995
MbiI CCGCTC 1 cut(s) 545
MboI GATC 3 cut(s) 90, 555, 993
MflI RGATCY 1 cut(s) 90
MhlI GDGCHC 2 cut(s) 564, 768
MluCI AATT 4 cut(s) 391, 1010, 1019, 1040
MlyI GAGTC 1 cut(s) 787
MmeI TCCRAC 1 cut(s) 422
MseI TTAA 2 cut(s) 755, 1037
MslI CAYNNNNRTG 1 cut(s) 1063
MspI CCGG 2 cut(s) 183, 722
MspR9I CCNGG 2 cut(s) 53, 208
MvaI CCWGG 2 cut(s) 53, 208
MwoI GCNNNNNNNGC 5 cut(s) 179, 463, 689, 731, 938
NcoI CCATGG 1 cut(s) 684
NdeII GATC 3 cut(s) 90, 555, 993
NlaIII CATG 8 cut(s) 493, 541, 637, 688, 784, 833, 1062, 1068
NlaIV GGNNCC 4 cut(s) 217, 523, 617, 629
NmeAIII GCCGAG 1 cut(s) 900
NmuCI GTSAC 4 cut(s) 202, 790, 808, 934
NspI RCATGY 2 cut(s) 493, 1068
PagI TCATGA 1 cut(s) 633
PceI AGGCCT 1 cut(s) 42
PcsI WCGNNNNNNNCGW 1 cut(s) 702
PfeI GAWTC 2 cut(s) 111, 566
Pfl23II CGTACG 1 cut(s) 673
PkrI GCNGC 4 cut(s) 488, 547, 603, 691
Ple19I CGATCG 1 cut(s) 996
PleI GAGTC 1 cut(s) 787
PmaCI CACGTG 2 cut(s) 790, 801
PmlI CACGTG 2 cut(s) 790, 801
PpsI GAGTC 1 cut(s) 787
Ppu21I YACGTR 2 cut(s) 790, 801
Psp124BI GAGCTC 2 cut(s) 564, 768
Psp6I CCWGG 2 cut(s) 51, 206
PspCI CACGTG 2 cut(s) 790, 801
PspGI CCWGG 2 cut(s) 51, 206
PspLI CGTACG 1 cut(s) 673
PspN4I GGNNCC 4 cut(s) 217, 523, 617, 629
PspPI GGNCC 3 cut(s) 49, 250, 616
PsuI RGATCY 1 cut(s) 90
PvuI CGATCG 1 cut(s) 996
RsaI GTAC 4 cut(s) 217, 497, 587, 675
RsaNI GTAC 4 cut(s) 216, 496, 586, 674
RseI CAYNNNNRTG 1 cut(s) 1063
SacI GAGCTC 2 cut(s) 564, 768
SaqAI TTAA 2 cut(s) 755, 1037
SatI GCNGC 4 cut(s) 487, 546, 602, 690
Sau3AI GATC 3 cut(s) 90, 555, 993
Sau96I GGNCC 3 cut(s) 49, 250, 616
SchI GAGTC 1 cut(s) 787
ScrFI CCNGG 2 cut(s) 53, 208
SduI GDGCHC 2 cut(s) 564, 768
SfaNI GCATC 2 cut(s) 65, 973
SfcI CTRYAG 1 cut(s) 168
SfiI GGCCNNNNNGGCC 1 cut(s) 731
SinI GGWCC 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 1063
Sse9I AATT 4 cut(s) 391, 1010, 1019, 1040
SseBI AGGCCT 1 cut(s) 42
SsiI CCGC 6 cut(s) 180, 545, 689, 886, 939, 959
SspMI CTAG 1 cut(s) 743
SstI GAGCTC 2 cut(s) 564, 768
StuI AGGCCT 1 cut(s) 42
StyD4I CCNGG 2 cut(s) 51, 206
StyI CCWWGG 2 cut(s) 97, 684
TaaI ACNGT 2 cut(s) 573, 678
TaiI ACGT 2 cut(s) 792, 803
TaqI TCGA 4 cut(s) 558, 564, 593, 996
TaqII GACCGA 2 cut(s) 37, 452
TasI AATT 4 cut(s) 391, 1010, 1019, 1040
TatI WGTACW 1 cut(s) 495
TauI GCSGC 2 cut(s) 548, 692
TfiI GAWTC 2 cut(s) 111, 566
Tru1I TTAA 2 cut(s) 755, 1037
Tru9I TTAA 2 cut(s) 755, 1037
TseFI GTSAC 4 cut(s) 202, 790, 808, 934
TseI GCWGC 2 cut(s) 486, 601
Tsp45I GTSAC 4 cut(s) 202, 790, 808, 934
VpaK11BI GGWCC 1 cut(s) 49
XapI RAATTY 2 cut(s) 391, 1019
XceI RCATGY 2 cut(s) 493, 1068
XcmI CCANNNNNNNNNTGG 1 cut(s) 885
XspI CTAG 1 cut(s) 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.