Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009042

Physical Location & Seq

Genomic Coordinates Reverse (-)

11163839 .. 11166458

Gene Structure 2620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G29200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGAAGCGTCATTGTTGATGAGATCGTCTTGTTGCTCCTCTGCGATTGGTGGGTTCTTCGACCATCGACGTGAATTATCAACCTCAACACCCATTTCCACTCTTCTTCCTCTTCCATCAACCAAATCTTCTTTCTCTGTTCGTTGTTCTCTTCCTCAGCCATCAAAGCCACGCTCTGGAACCAGCTCTGTTCACGCCGTTATGACACTCGCTGGATCGTTGACAGGGAAGAAACGAGTGGATGAGAGTGAGAGTTTGACTCTTGAAGGTATTAGAAACTCTTTGATCCGTCAAGAGGACAGCATTATATTTGGGCTATTGGAGAGAGCCAAGTACTGTTACAATGCTGATACTTATGATCCTACTGCTTTTGACATGGATGGTTTCAATGGTTCTTTGGTTGAGTACATGGTTAAAGGCACTGAGAAGCTTCACGCTAAGGTTGGTAGGTTTAAGAGTCCTGATGAACATCCTTTCTTCCCTGATGATCTACCAGAGCCTATGTTGCCTCCTCTTCAGTACCCAAAGGTGTTGCATTTTGCTGCTGATTCGATAAACATAAACAAGAAGATATGGAACATGTACTTCAGAGACCTTGTTCCAAGACTTGTGAAGAAAGGCGATGATGGTAACTACGGCTCAACAGCTGTCTGTGACGCTATCTGCCTTCAGTGTCTCTCAAAGAGAATCCATTACGGTAAATTTGTTGCAGAAGCTAAATTTCAAGCCTCACCCGAAGCATACGAGTCCGCCATCAAAGCACAAGATAAGGATGCACTGATGGATATGCTGACATTCCCGACTGTGGAAGATGCGATAAAGAAGAGAGTTGAGATGAAAACCCGAACATACGGGCAAGAAGTGAAAGTTGGGATGGAGGAGAAAGAAGAAGAAGAAGAAGAAGGGAATGAATCTCATGTTTACAAAATCAGTCCGATCTTAGTTGGTGACTTATATGGAGATTGGATCATGCCTTTAACAAAAGAGGTTCAAGTGGAGTACTTGCTCAGAAGACTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004106 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009636 GO:0009987 GO:0016053 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016853 GO:0016866 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

340

Amino Acids

38.24

Weight (kDa)

5.65

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CM_2	PF01817	213 - 331	2e-07	Chorismate mutase type II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29200
fragaria_vesca	FvH4_6g47770 FvH4_6g47770
malus_domestica	MD09G1057700.v1.1 MD09G1058000.v1.1 MD17G1054600.v1.1
prunus_persica	Prupe.3G261500_v2.0.a1
pyrus_communis	pycom111g04790 pycom111g04830 pycom17g05220
rosa_chinensis	RchiOBHm_Chr2g0166931
rosa_laevigata	RLG00000021679
rosa_multiflora	Rmu_sc0002735.1_g000017 Rmu_sc0005344.1_g000010
rosa_roxburghii	Rroxscaffold_2G00084010 Rroxscaffold_2G00084420
rosa_rugosa	Rorug02G0526400
rosa_samantha	Rh2AG593300 Rh2BG604900 Rh2CG575700 Rh2DG616500
rosa_wichuraiana	Rw2G049400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	176
AciI	CCGC	1 cut(s)	750
AclWI	GGATC	4 cut(s)	223, 280, 353, 974
AcsI	RAATTY	2 cut(s)	701, 719
AcuI	CTGAAG	3 cut(s)	500, 571, 653
AfaI	GTAC	5 cut(s)	335, 407, 521, 584, 1001
AfiI	CCNNNNNNNGG	3 cut(s)	176, 295, 805
AflIII	ACRYGT	1 cut(s)	579
AgsI	TTSAA	4 cut(s)	266, 388, 725, 992
AjiI	CACGTC	1 cut(s)	71
AjuI	GAANNNNNNNTTGG	4 cut(s)	116, 148, 852, 884
AluBI	AGCT	4 cut(s)	186, 430, 647, 716
AluI	AGCT	4 cut(s)	186, 430, 647, 716
Alw26I	GTCTC	2 cut(s)	585, 680
AlwI	GGATC	4 cut(s)	223, 280, 353, 974
ApeKI	GCWGC	1 cut(s)	542
ApoI	RAATTY	2 cut(s)	701, 719
AsuHPI	GGTGA	2 cut(s)	723, 959
BbsI	GAAGAC	1 cut(s)	1018
BbvCI	CCTCAGC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	529
BccI	CCATC	8 cut(s)	72, 124, 169, 374, 620, 761, 775, 868
BceAI	ACGGC	2 cut(s)	182, 652
BcoDI	GTCTC	2 cut(s)	585, 680
BisI	GCNGC	1 cut(s)	543
BlsI	GCNGC	1 cut(s)	544
BmcAI	AGTACT	2 cut(s)	335, 1001
BmgBI	CACGTC	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	181
BmsI	GCATC	2 cut(s)	763, 802
BpiI	GAAGAC	1 cut(s)	1018
BplI	GAGNNNNNCTC	2 cut(s)	244, 276
Bpu10I	CCTNAGC	2 cut(s)	156, 438
BsaBI	GATNNNNATC	1 cut(s)	468
BsaI	GGTCTC	1 cut(s)	585
Bsc4I	CCNNNNNNNGG	3 cut(s)	176, 295, 805
Bse1I	ACTGG	1 cut(s)	1020
Bse8I	GATNNNNATC	1 cut(s)	468
BseGI	GGATG	5 cut(s)	247, 385, 469, 778, 879
BseJI	GATNNNNATC	1 cut(s)	468
BseLI	CCNNNNNNNGG	3 cut(s)	176, 295, 805
BseMII	CTCAG	3 cut(s)	170, 414, 1021
BseNI	ACTGG	1 cut(s)	1020
BseRI	GAGGAG	3 cut(s)	28, 501, 893
BseXI	GCAGC	1 cut(s)	529
BslI	CCNNNNNNNGG	3 cut(s)	176, 295, 805
BsmAI	GTCTC	2 cut(s)	585, 680
Bso31I	GGTCTC	1 cut(s)	585
Bsp143I	GATC	7 cut(s)	23, 215, 285, 358, 487, 936, 966
BspACI	CCGC	1 cut(s)	750
BspCNI	CTCAG	3 cut(s)	169, 415, 1020
BspLI	GGNNCC	1 cut(s)	181
BspPI	GGATC	4 cut(s)	223, 280, 353, 974
BspTNI	GGTCTC	1 cut(s)	585
BsrI	ACTGG	1 cut(s)	1020
BssMI	GATC	7 cut(s)	23, 215, 285, 358, 487, 936, 966
Bst4CI	ACNGT	3 cut(s)	338, 698, 805
Bst6I	CTCTTC	5 cut(s)	108, 117, 156, 519, 818
BstDEI	CTNAG	5 cut(s)	156, 423, 438, 940, 1007
BstF5I	GGATG	5 cut(s)	247, 385, 469, 778, 879
BstKTI	GATC	7 cut(s)	26, 218, 288, 361, 490, 939, 969
BstMAI	GTCTC	2 cut(s)	585, 680
BstMBI	GATC	7 cut(s)	23, 215, 285, 358, 487, 936, 966
BstMWI	GCNNNNNNNGC	3 cut(s)	166, 505, 758
BstNSI	RCATGY	1 cut(s)	583
BstV1I	GCAGC	1 cut(s)	529
BstV2I	GAAGAC	1 cut(s)	1018
BtgZI	GCGATG	1 cut(s)	636
BtrI	CACGTC	1 cut(s)	71
BtsCI	GGATG	5 cut(s)	247, 385, 469, 778, 879
BtsIMutI	CAGTG	3 cut(s)	420, 677, 776
CseI	GACGC	1 cut(s)	665
Csp6I	GTAC	5 cut(s)	334, 406, 520, 583, 1000
CviAII	CATG	5 cut(s)	376, 409, 580, 917, 970
CviQI	GTAC	5 cut(s)	334, 406, 520, 583, 1000
DdeI	CTNAG	5 cut(s)	156, 423, 438, 940, 1007
DpnI	GATC	7 cut(s)	25, 217, 287, 360, 489, 938, 968
DpnII	GATC	7 cut(s)	23, 215, 285, 358, 487, 936, 966
Eam1104I	CTCTTC	5 cut(s)	108, 117, 156, 519, 818
EarI	CTCTTC	5 cut(s)	108, 117, 156, 519, 818
EciI	GGCGGA	1 cut(s)	739
Eco31I	GGTCTC	1 cut(s)	585
Eco57I	CTGAAG	3 cut(s)	500, 571, 653
FaeI	CATG	5 cut(s)	379, 412, 583, 920, 973
FatI	CATG	5 cut(s)	375, 408, 579, 916, 969
Fnu4HI	GCNGC	1 cut(s)	543
FokI	GGATG	5 cut(s)	254, 392, 456, 785, 886
Fsp4HI	GCNGC	1 cut(s)	543
GluI	GCNGC	1 cut(s)	543
HgaI	GACGC	1 cut(s)	665
Hin1II	CATG	5 cut(s)	379, 412, 583, 920, 973
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	6 cut(s)	259, 457, 548, 687, 746, 911
HphI	GGTGA	2 cut(s)	723, 959
Hpy166II	GTNNAC	3 cut(s)	193, 222, 922
Hpy188I	TCNGA	3 cut(s)	590, 936, 1010
Hpy188III	TCNNGA	5 cut(s)	177, 263, 293, 461, 799
Hpy8I	GTNNAC	3 cut(s)	193, 222, 922
Hpy99I	CGWCG	1 cut(s)	72
HpyAV	CCTTC	3 cut(s)	260, 677, 896
HpyCH4III	ACNGT	3 cut(s)	338, 698, 805
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	3 cut(s)	535, 710, 776
HpyF10VI	GCNNNNNNNGC	3 cut(s)	166, 505, 758
HpyF3I	CTNAG	5 cut(s)	156, 423, 438, 940, 1007
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	5 cut(s)	379, 412, 583, 920, 973
Kzo9I	GATC	7 cut(s)	23, 215, 285, 358, 487, 936, 966
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	8 cut(s)	162, 196, 198, 210, 474, 495, 507, 1001
Lsp1109I	GCAGC	1 cut(s)	529
LweI	GCATC	2 cut(s)	763, 802
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	4 cut(s)	338, 629, 653, 947
MalI	GATC	7 cut(s)	25, 217, 287, 360, 489, 938, 968
MboI	GATC	7 cut(s)	23, 215, 285, 358, 487, 936, 966
MluCI	AATT	3 cut(s)	74, 701, 719
MlyI	GAGTC	3 cut(s)	253, 466, 755
MseI	TTAA	3 cut(s)	414, 453, 977
MslI	CAYNNNNRTG	1 cut(s)	69
MspA1I	CMGCKG	1 cut(s)	647
MwoI	GCNNNNNNNGC	3 cut(s)	166, 505, 758
NdeII	GATC	7 cut(s)	23, 215, 285, 358, 487, 936, 966
NlaIII	CATG	5 cut(s)	379, 412, 583, 920, 973
NlaIV	GGNNCC	1 cut(s)	181
NmuCI	GTSAC	2 cut(s)	653, 947
NspI	RCATGY	1 cut(s)	583
PciI	ACATGT	1 cut(s)	579
PfeI	GAWTC	3 cut(s)	548, 687, 911
PflMI	CCANNNNNTGG	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	544
PleI	GAGTC	3 cut(s)	253, 465, 754
PpsI	GAGTC	3 cut(s)	253, 465, 754
PscI	ACATGT	1 cut(s)	579
PspN4I	GGNNCC	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	5 cut(s)	335, 407, 521, 584, 1001
RsaNI	GTAC	5 cut(s)	334, 406, 520, 583, 1000
RseI	CAYNNNNRTG	1 cut(s)	69
SaqAI	TTAA	3 cut(s)	414, 453, 977
SatI	GCNGC	1 cut(s)	543
Sau3AI	GATC	7 cut(s)	23, 215, 285, 358, 487, 936, 966
ScaI	AGTACT	2 cut(s)	335, 1001
SchI	GAGTC	3 cut(s)	253, 466, 755
SfaNI	GCATC	2 cut(s)	763, 802
SmiMI	CAYNNNNRTG	1 cut(s)	69
Sse9I	AATT	3 cut(s)	74, 701, 719
SsiI	CCGC	1 cut(s)	750
TaaI	ACNGT	3 cut(s)	338, 698, 805
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	3 cut(s)	60, 67, 551
TasI	AATT	3 cut(s)	74, 701, 719
TatI	WGTACW	4 cut(s)	333, 405, 582, 999
TfiI	GAWTC	3 cut(s)	548, 687, 911
Tru1I	TTAA	3 cut(s)	414, 453, 977
Tru9I	TTAA	3 cut(s)	414, 453, 977
TscAI	CASTG	3 cut(s)	427, 677, 783
TseFI	GTSAC	2 cut(s)	653, 947
TseI	GCWGC	1 cut(s)	542
Tsp45I	GTSAC	2 cut(s)	653, 947
TspDTI	ATGAA	3 cut(s)	480, 851, 924
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	3 cut(s)	427, 677, 783
Van91I	CCANNNNNTGG	1 cut(s)	176
XapI	RAATTY	2 cut(s)	701, 719
XceI	RCATGY	1 cut(s)	583
ZrmI	AGTACT	2 cut(s)	335, 1001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.