Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0009042

Physical Location & Seq

Genomic Coordinates Reverse (-)

2906176 .. 2906783

Gene Structure 608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g04790.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGATGGTAACTACGGTTCAACTGCTGTTTGTGACACAATGTGCTTGCAGCATTTCTAAATGCTTGCCAGGATTCCTATGCTCGCGGGCTCTGTCCAAGAGAATCCATTATGGTAACTTTGTTGCAGAGTGCAAATTTCGATCCAATCCAAATGCCTATGAAGCTGCCATTATCGAACAGAACAGGGACAAGGTGATGGCCTTGTTGACATATCCAACGGTTGAGGAGGCAATCATAAAGAGGGTGGAAATGAAGGTGAAAACTTACGGGCAAGAAGTGACCTTGTACGAAGGAGAAAAGAAAAATCCCAACCTGGTTTATAAGATAAAACCAACCTTGGTTGCAGATTTATACGGGGATTGGATCATGCCAAATTGCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004106 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009636 GO:0009987 GO:0016053 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016853 GO:0016866 GO:0019438 GO:0019752 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0097237 GO:0098754 GO:0098869 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.48

Weight (kDa)

8.73

Isoelectric Point (pI)

32.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29200
fragaria_vesca	FvH4_6g47770 FvH4_6g47770
malus_domestica	MD09G1057700.v1.1 MD09G1058000.v1.1 MD17G1054600.v1.1
prunus_persica	Prupe.3G261500_v2.0.a1
pyrus_communis	pycom111g04790 pycom111g04830 pycom17g05220
rosa_chinensis	RchiOBHm_Chr2g0166931
rosa_laevigata	RLG00000021679
rosa_multiflora	Rmu_sc0002735.1_g000017 Rmu_sc0005344.1_g000010
rosa_roxburghii	Rroxscaffold_2G00084010 Rroxscaffold_2G00084420
rosa_rugosa	Rorug02G0526400
rosa_samantha	Rh2AG593300 Rh2BG604900 Rh2CG575700 Rh2DG616500
rosa_wichuraiana	Rw2G049400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	321
AccII	CGCG	1 cut(s)	85
AciI	CCGC	1 cut(s)	85
AclWI	GGATC	2 cut(s)	135, 371
AcsI	RAATTY	1 cut(s)	134
AdeI	CACNNNGTG	1 cut(s)	41
AfaI	GTAC	1 cut(s)	287
AgsI	TTSAA	1 cut(s)	20
AjnI	CCWGG	2 cut(s)	67, 312
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
AlwI	GGATC	2 cut(s)	135, 371
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	2 cut(s)	48, 164
ApoI	RAATTY	1 cut(s)	134
AsuHPI	GGTGA	2 cut(s)	205, 268
BanII	GRGCYC	1 cut(s)	91
BbvI	GCAGC	2 cut(s)	60, 151
BccI	CCATC	1 cut(s)	190
BciT130I	CCWGG	2 cut(s)	69, 314
BisI	GCNGC	2 cut(s)	49, 165
BlsI	GCNGC	2 cut(s)	50, 166
Bme1390I	CCNGG	2 cut(s)	69, 314
BmrFI	CCNGG	2 cut(s)	69, 314
BsaJI	CCNNGG	1 cut(s)	336
BseBI	CCWGG	2 cut(s)	69, 314
BseDI	CCNNGG	1 cut(s)	336
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	2 cut(s)	60, 151
Bsh1236I	CGCG	1 cut(s)	85
BshFI	GGCC	1 cut(s)	200
BslFI	GGGAC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	2 cut(s)	140, 363
BspACI	CCGC	1 cut(s)	85
BspANI	GGCC	1 cut(s)	200
BspFNI	CGCG	1 cut(s)	85
BspPI	GGATC	2 cut(s)	135, 371
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	2 cut(s)	140, 363
BssT1I	CCWWGG	1 cut(s)	336
Bst2UI	CCWGG	2 cut(s)	69, 314
Bst4CI	ACNGT	2 cut(s)	16, 220
BstC8I	GCNNGC	4 cut(s)	46, 65, 83, 87
BstFNI	CGCG	1 cut(s)	85
BstKTI	GATC	2 cut(s)	143, 366
BstMBI	GATC	2 cut(s)	140, 363
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	2 cut(s)	69, 314
BstSCI	CCNGG	2 cut(s)	67, 312
BstUI	CGCG	1 cut(s)	85
BstV1I	GCAGC	2 cut(s)	60, 151
BsuRI	GGCC	1 cut(s)	200
Cac8I	GCNNGC	4 cut(s)	46, 65, 83, 87
CsiI	ACCWGGT	1 cut(s)	312
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	1 cut(s)	367
CviJI	RGCY	3 cut(s)	89, 164, 200
CviKI_1	RGCY	3 cut(s)	89, 164, 200
CviQI	GTAC	1 cut(s)	286
DpnI	GATC	2 cut(s)	142, 365
DpnII	GATC	2 cut(s)	140, 363
DraIII	CACNNNGTG	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	91
EcoRII	CCWGG	2 cut(s)	67, 312
EcoT14I	CCWWGG	1 cut(s)	336
EcoT38I	GRGCYC	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	1 cut(s)	370
FaiI	YATR	8 cut(s)	79, 111, 159, 211, 236, 321, 352, 368
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	1 cut(s)	366
FauI	CCCGC	1 cut(s)	78
Fnu4HI	GCNGC	2 cut(s)	49, 165
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	2 cut(s)	49, 165
GluI	GCNGC	2 cut(s)	49, 165
HaeIII	GGCC	1 cut(s)	200
Hin1II	CATG	1 cut(s)	370
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HinfI	GANTC	2 cut(s)	72, 102
HphI	GGTGA	2 cut(s)	205, 268
Hpy166II	GTNNAC	1 cut(s)	207
Hpy8I	GTNNAC	1 cut(s)	207
HpyAV	CCTTC	2 cut(s)	247, 284
HpyCH4III	ACNGT	2 cut(s)	16, 220
HpyCH4V	TGCA	4 cut(s)	48, 125, 132, 344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
Hsp92II	CATG	1 cut(s)	370
Kzo9I	GATC	2 cut(s)	140, 363
LpnPI	CCDG	5 cut(s)	54, 81, 169, 299, 326
Lsp1109I	GCAGC	2 cut(s)	60, 151
MabI	ACCWGGT	1 cut(s)	312
MaeIII	GTNAC	4 cut(s)	7, 31, 113, 277
MalI	GATC	2 cut(s)	142, 365
MboI	GATC	2 cut(s)	140, 363
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	2 cut(s)	134, 373
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	3 cut(s)	217, 220, 234
MspR9I	CCNGG	2 cut(s)	69, 314
MvaI	CCWGG	2 cut(s)	69, 314
MvnI	CGCG	1 cut(s)	85
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeII	GATC	2 cut(s)	140, 363
NlaIII	CATG	1 cut(s)	370
NmuCI	GTSAC	2 cut(s)	31, 277
PfeI	GAWTC	2 cut(s)	72, 102
PkrI	GCNGC	2 cut(s)	50, 166
PsiI	TTATAA	1 cut(s)	321
Psp6I	CCWGG	2 cut(s)	67, 312
PspGI	CCWGG	2 cut(s)	67, 312
PsrI	GAACNNNNNNTAC	1 cut(s)	32
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SatI	GCNGC	2 cut(s)	49, 165
Sau3AI	GATC	2 cut(s)	140, 363
ScrFI	CCNGG	2 cut(s)	69, 314
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	6 cut(s)	166, 195, 258, 284, 315, 338
SexAI	ACCWGGT	1 cut(s)	312
Sse9I	AATT	2 cut(s)	134, 373
SsiI	CCGC	1 cut(s)	85
StyD4I	CCNGG	2 cut(s)	67, 312
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	2 cut(s)	16, 220
TaqI	TCGA	2 cut(s)	139, 174
TasI	AATT	2 cut(s)	134, 373
TfiI	GAWTC	2 cut(s)	72, 102
TseFI	GTSAC	2 cut(s)	31, 277
TseI	GCWGC	2 cut(s)	48, 164
Tsp45I	GTSAC	2 cut(s)	31, 277
TspDTI	ATGAA	2 cut(s)	174, 266
XapI	RAATTY	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.