Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009042

Physical Location & Seq

Genomic Coordinates Reverse (-)

6523675 .. 6526985

Gene Structure 3311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00084010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGAGGCTAAACTGTTTAGGGCCTCCTCCTCTTCTGCGATTCTTGCTGCTCCTCGAGCTTCACGATTCAATTACGCGGTGGCCCTGAGGAAAAGTAACAGCTTCACATGCGTCAGCTCAGGCTTAGCTAAGAAAGGAAATCTGTCAGTTCAGGCCACCGCAACTTCAACTGGATCATTGGCCTCAAGGAATAGGGTGGATGAAACTGATAATTTGACCCTAGAAGGTATAAGACACTCTTTGATTCGTCAGGAGGATAGCATCATATTTAGCCTTCTAGAGAGATCTCAGTATTGTCATAATGGGTCTACATATGACCCCAATGCTTTCCCTATGGATGGGTTCCAGGGCTCATTGGTAGAATACATTCTTCAAGAAACAGAAAAACTTCATGCTCTGGTGGGTAGATACAGCAGTCCCGATGAGCATCCTTTCTTTCCAGATCACCTGCCTACCCCAGTTTTGCCTCCTCTGCAATACCCTCAGGTACTACATCCCATTGCCCATTCAATTAATATAAATAGCAAAGTCTGGGAGATGTACTTCAGAGATATTCTTCCAAGACTGGTTAAGGAAGGAGATGATGGTAATAATGGATCAACTGCTGTTTGCGACACAATGTGCTTGCAGACTCTTTCAAAGAGAATCCATTATGGTAAATTTGTAGCAGAGTGCAAGTTCCGCACCTCTCCACAGCAGTATGAAGCTGCCATTAAAGAACAGAATAGGGACAAGCTGCTGGCTCTGTTGACGTATCCAACTGTTGAGGAGGCAATCATAAAGAGGGTGGAAATGAAAGCCAAAACTTATGGGCAAGAGGTTACAGTGTACAAAGTGAAAGAGGAACAACCCGGCTTGCAGGTTTATAAGATTAGACCAACCCTGGTTGCAGATTTGTATGGGGAATGGATCATGCCATTGACAAAGCAAGTTCAAGTTGAATACTTATTAAGAAGGTTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004106 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009636 GO:0009987 GO:0016053 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016853 GO:0016866 GO:0019438 GO:0019752 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0097237 GO:0098754 GO:0098869 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

321

Amino Acids

36.29

Weight (kDa)

8.16

Isoelectric Point (pI)

46.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CM_2	PF01817	200 - 312	1.6e-09	Chorismate mutase type II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29200
fragaria_vesca	FvH4_6g47770 FvH4_6g47770
malus_domestica	MD09G1057700.v1.1 MD09G1058000.v1.1 MD17G1054600.v1.1
prunus_persica	Prupe.3G261500_v2.0.a1
pyrus_communis	pycom111g04790 pycom111g04830 pycom17g05220
rosa_chinensis	RchiOBHm_Chr2g0166931
rosa_laevigata	RLG00000021679
rosa_multiflora	Rmu_sc0002735.1_g000017 Rmu_sc0005344.1_g000010
rosa_roxburghii	Rroxscaffold_2G00084010 Rroxscaffold_2G00084420
rosa_rugosa	Rorug02G0526400
rosa_samantha	Rh2AG593300 Rh2BG604900 Rh2CG575700 Rh2DG616500
rosa_wichuraiana	Rw2G049400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	867
AarI	CACCTGC	1 cut(s)	456
Acc36I	ACCTGC	2 cut(s)	456, 850
AccI	GTMKAC	1 cut(s)	308
AccII	CGCG	1 cut(s)	77
AciI	CCGC	3 cut(s)	77, 159, 682
AclWI	GGATC	3 cut(s)	181, 604, 917
AcsI	RAATTY	1 cut(s)	659
AcuI	CTGAAG	1 cut(s)	529
AdeI	CACNNNGTG	1 cut(s)	621
AfaI	GTAC	3 cut(s)	489, 542, 830
AfiI	CCNNNNNNNGG	1 cut(s)	338
AgsI	TTSAA	7 cut(s)	70, 168, 374, 510, 639, 935, 941
AjnI	CCWGG	2 cut(s)	345, 882
AluBI	AGCT	6 cut(s)	59, 102, 117, 128, 707, 736
AluI	AGCT	6 cut(s)	59, 102, 117, 128, 707, 736
AlwI	GGATC	3 cut(s)	181, 604, 917
Ama87I	CYCGRG	1 cut(s)	54
AoxI	GGCC	4 cut(s)	21, 81, 153, 180
ApeKI	GCWGC	3 cut(s)	47, 707, 736
ApoI	RAATTY	1 cut(s)	659
AseI	ATTAAT	1 cut(s)	513
Asp700I	GAANNNNTTC	2 cut(s)	366, 387
AspS9I	GGNCC	2 cut(s)	21, 82
AsuC2I	CCSGG	1 cut(s)	852
AsuHPI	GGTGA	1 cut(s)	437
AvaI	CYCGRG	1 cut(s)	54
AxyI	CCTNAGG	2 cut(s)	86, 483
BaeI	ACNNNNGTAYC	2 cut(s)	400, 433
BanII	GRGCYC	1 cut(s)	353
BbvI	GCAGC	3 cut(s)	34, 694, 723
BccI	CCATC	2 cut(s)	332, 578
BciT130I	CCWGG	2 cut(s)	347, 884
BciVI	GTATCC	1 cut(s)	765
BcnI	CCSGG	1 cut(s)	852
BfaI	CTAG	2 cut(s)	221, 278
BfuAI	ACCTGC	2 cut(s)	456, 850
BfuI	GTATCC	1 cut(s)	765
BglII	AGATCT	1 cut(s)	284
BisI	GCNGC	3 cut(s)	48, 708, 737
BlpI	GCTNAGC	1 cut(s)	124
BlsI	GCNGC	3 cut(s)	49, 709, 738
Bme1390I	CCNGG	3 cut(s)	347, 852, 884
BmeT110I	CYCGRG	1 cut(s)	54
BmgT120I	GGNCC	2 cut(s)	21, 82
BmiI	GGNNCC	1 cut(s)	344
BmrFI	CCNGG	3 cut(s)	347, 852, 884
BmrI	ACTGGG	1 cut(s)	452
BmsI	GCATC	2 cut(s)	270, 436
BmuI	ACTGGG	1 cut(s)	452
Bpu10I	CCTNAGC	1 cut(s)	118
Bpu1102I	GCTNAGC	1 cut(s)	124
BpuEI	CTTGAG	1 cut(s)	169
BpuMI	CCSGG	1 cut(s)	852
BsaBI	GATNNNNATC	1 cut(s)	426
BsaJI	CCNNGG	2 cut(s)	346, 882
Bsc4I	CCNNNNNNNGG	1 cut(s)	338
Bse1I	ACTGG	3 cut(s)	175, 458, 570
Bse21I	CCTNAGG	2 cut(s)	86, 483
Bse3DI	GCAATG	1 cut(s)	498
Bse8I	GATNNNNATC	1 cut(s)	426
BseBI	CCWGG	2 cut(s)	347, 884
BseDI	CCNNGG	2 cut(s)	346, 882
BseGI	GGATG	4 cut(s)	205, 343, 427, 493
BseJI	GATNNNNATC	1 cut(s)	426
BseLI	CCNNNNNNNGG	1 cut(s)	338
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	4 cut(s)	77, 132, 302, 497
BseNI	ACTGG	3 cut(s)	175, 458, 570
BseRI	GAGGAG	5 cut(s)	16, 19, 42, 459, 782
BseXI	GCAGC	3 cut(s)	34, 694, 723
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	4 cut(s)	23, 83, 155, 182
BsiHKCI	CYCGRG	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	852
BslFI	GGGAC	2 cut(s)	402, 743
BslI	CCNNNNNNNGG	1 cut(s)	338
BsmFI	GGGAC	2 cut(s)	402, 743
BsnI	GGCC	4 cut(s)	23, 83, 155, 182
BsoBI	CYCGRG	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp1407I	TGTACA	1 cut(s)	828
Bsp143I	GATC	5 cut(s)	173, 284, 442, 596, 909
Bsp1720I	GCTNAGC	1 cut(s)	124
BspACI	CCGC	3 cut(s)	77, 159, 682
BspANI	GGCC	4 cut(s)	23, 83, 155, 182
BspCNI	CTCAG	4 cut(s)	78, 131, 301, 496
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	1 cut(s)	344
BspMI	ACCTGC	2 cut(s)	456, 850
BspPI	GGATC	3 cut(s)	181, 604, 917
BsrDI	GCAATG	1 cut(s)	498
BsrGI	TGTACA	1 cut(s)	828
BsrI	ACTGG	3 cut(s)	175, 458, 570
BssECI	CCNNGG	2 cut(s)	346, 882
BssMI	GATC	5 cut(s)	173, 284, 442, 596, 909
Bst2UI	CCWGG	2 cut(s)	347, 884
Bst4CI	ACNGT	3 cut(s)	15, 763, 826
Bst6I	CTCTTC	1 cut(s)	37
BstAUI	TGTACA	1 cut(s)	828
BstC8I	GCNNGC	3 cut(s)	626, 741, 857
BstDEI	CTNAG	6 cut(s)	86, 118, 124, 129, 288, 483
BstF5I	GGATG	4 cut(s)	205, 343, 427, 493
BstFNI	CGCG	1 cut(s)	77
BstKTI	GATC	5 cut(s)	176, 287, 445, 599, 912
BstMBI	GATC	5 cut(s)	173, 284, 442, 596, 909
BstMWI	GCNNNNNNNGC	5 cut(s)	44, 56, 108, 472, 681
BstNI	CCWGG	2 cut(s)	347, 884
BstNSI	RCATGY	1 cut(s)	111
BstSCI	CCNGG	3 cut(s)	345, 850, 882
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	3 cut(s)	34, 694, 723
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
Bsu36I	CCTNAGG	2 cut(s)	86, 483
BsuI	GTATCC	1 cut(s)	765
BsuRI	GGCC	4 cut(s)	23, 83, 155, 182
BtsCI	GGATG	4 cut(s)	205, 343, 427, 493
BtsIMutI	CAGTG	1 cut(s)	831
BveI	ACCTGC	2 cut(s)	456, 850
Cac8I	GCNNGC	3 cut(s)	626, 741, 857
Cfr13I	GGNCC	2 cut(s)	21, 82
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	3 cut(s)	488, 541, 829
CviAII	CATG	3 cut(s)	108, 392, 913
CviQI	GTAC	3 cut(s)	488, 541, 829
DdeI	CTNAG	6 cut(s)	86, 118, 124, 129, 288, 483
DpnI	GATC	5 cut(s)	175, 286, 444, 598, 911
DpnII	GATC	5 cut(s)	173, 284, 442, 596, 909
DraIII	CACNNNGTG	1 cut(s)	621
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	353
Eco57I	CTGAAG	1 cut(s)	529
Eco81I	CCTNAGG	2 cut(s)	86, 483
Eco88I	CYCGRG	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	21
EcoRII	CCWGG	2 cut(s)	345, 882
EcoT38I	GRGCYC	1 cut(s)	353
FaeI	CATG	3 cut(s)	111, 395, 916
FalI	AAGNNNNNCTT	2 cut(s)	223, 255
FaqI	GGGAC	2 cut(s)	402, 743
FatI	CATG	3 cut(s)	107, 391, 912
FauNDI	CATATG	1 cut(s)	313
FblI	GTMKAC	1 cut(s)	308
Fnu4HI	GCNGC	3 cut(s)	48, 708, 737
FokI	GGATG	4 cut(s)	212, 350, 414, 480
FriOI	GRGCYC	1 cut(s)	353
Fsp4HI	GCNGC	3 cut(s)	48, 708, 737
FspBI	CTAG	2 cut(s)	221, 278
GluI	GCNGC	3 cut(s)	48, 708, 737
HaeIII	GGCC	4 cut(s)	23, 83, 155, 182
HapII	CCGG	1 cut(s)	852
HgaI	GACGC	1 cut(s)	100
Hin1II	CATG	3 cut(s)	111, 395, 916
HincII	GTYRAC	1 cut(s)	750
HindII	GTYRAC	1 cut(s)	750
HinfI	GANTC	5 cut(s)	40, 66, 244, 631, 645
HpaII	CCGG	1 cut(s)	852
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	3 cut(s)	309, 750, 829
Hpy188I	TCNGA	1 cut(s)	548
Hpy188III	TCNNGA	6 cut(s)	63, 251, 278, 374, 419, 440
Hpy8I	GTNNAC	3 cut(s)	309, 750, 829
HpyAV	CCTTC	4 cut(s)	218, 284, 569, 948
HpyCH4III	ACNGT	3 cut(s)	15, 763, 826
HpyCH4IV	ACGT	1 cut(s)	752
HpyCH4V	TGCA	5 cut(s)	475, 628, 675, 859, 890
HpyF10VI	GCNNNNNNNGC	5 cut(s)	44, 56, 108, 472, 681
HpyF3I	CTNAG	6 cut(s)	86, 118, 124, 129, 288, 483
HpySE526I	ACGT	1 cut(s)	752
Hsp92II	CATG	3 cut(s)	111, 395, 916
Kzo9I	GATC	5 cut(s)	173, 284, 442, 596, 909
LmnI	GCTCC	1 cut(s)	55
Lsp1109I	GCAGC	3 cut(s)	34, 694, 723
LweI	GCATC	2 cut(s)	270, 436
MaeI	CTAG	2 cut(s)	221, 278
MaeII	ACGT	1 cut(s)	752
MaeIII	GTNAC	2 cut(s)	95, 820
MalI	GATC	5 cut(s)	175, 286, 444, 598, 911
MboI	GATC	5 cut(s)	173, 284, 442, 596, 909
MboII	GAAGA	3 cut(s)	24, 362, 548
MflI	RGATCY	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	4 cut(s)	70, 211, 510, 659
MlyI	GAGTC	1 cut(s)	625
MmeI	TCCRAC	2 cut(s)	782, 939
MroXI	GAANNNNTTC	2 cut(s)	366, 387
MseI	TTAA	4 cut(s)	513, 570, 714, 950
MspI	CCGG	1 cut(s)	852
MspR9I	CCNGG	3 cut(s)	347, 852, 884
MvaI	CCWGG	2 cut(s)	347, 884
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	5 cut(s)	44, 56, 108, 472, 681
NciI	CCSGG	1 cut(s)	852
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	5 cut(s)	173, 284, 442, 596, 909
NlaIII	CATG	3 cut(s)	111, 395, 916
NlaIV	GGNNCC	1 cut(s)	344
NspI	RCATGY	1 cut(s)	111
PaeR7I	CTCGAG	1 cut(s)	54
PaqCI	CACCTGC	1 cut(s)	456
PcsI	WCGNNNNNNNCGW	1 cut(s)	61
PdmI	GAANNNNTTC	2 cut(s)	366, 387
PfeI	GAWTC	4 cut(s)	40, 66, 244, 645
PkrI	GCNGC	3 cut(s)	49, 709, 738
PleI	GAGTC	1 cut(s)	625
PpsI	GAGTC	1 cut(s)	625
PshBI	ATTAAT	1 cut(s)	513
PsiI	TTATAA	1 cut(s)	867
Psp6I	CCWGG	2 cut(s)	345, 882
PspGI	CCWGG	2 cut(s)	345, 882
PspN4I	GGNNCC	1 cut(s)	344
PspPI	GGNCC	2 cut(s)	21, 82
PspXI	VCTCGAGB	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	284
RsaI	GTAC	3 cut(s)	489, 542, 830
RsaNI	GTAC	3 cut(s)	488, 541, 829
SaqAI	TTAA	4 cut(s)	513, 570, 714, 950
SatI	GCNGC	3 cut(s)	48, 708, 737
Sau3AI	GATC	5 cut(s)	173, 284, 442, 596, 909
Sau96I	GGNCC	2 cut(s)	21, 82
SchI	GAGTC	1 cut(s)	625
ScrFI	CCNGG	3 cut(s)	347, 852, 884
SduI	GDGCHC	1 cut(s)	353
SfaNI	GCATC	2 cut(s)	270, 436
Sfr274I	CTCGAG	1 cut(s)	54
SlaI	CTCGAG	1 cut(s)	54
SmlI	CTYRAG	2 cut(s)	54, 184
SmoI	CTYRAG	2 cut(s)	54, 184
Sse9I	AATT	4 cut(s)	70, 211, 510, 659
SsiI	CCGC	3 cut(s)	77, 159, 682
SspMI	CTAG	2 cut(s)	221, 278
StyD4I	CCNGG	3 cut(s)	345, 850, 882
TaaI	ACNGT	3 cut(s)	15, 763, 826
TaiI	ACGT	1 cut(s)	755
TaqI	TCGA	1 cut(s)	55
TasI	AATT	4 cut(s)	70, 211, 510, 659
TatI	WGTACW	2 cut(s)	540, 828
TfiI	GAWTC	4 cut(s)	40, 66, 244, 645
Tru1I	TTAA	4 cut(s)	513, 570, 714, 950
Tru9I	TTAA	4 cut(s)	513, 570, 714, 950
TscAI	CASTG	1 cut(s)	831
TseI	GCWGC	3 cut(s)	47, 707, 736
TspDTI	ATGAA	4 cut(s)	216, 380, 717, 809
TspRI	CASTG	1 cut(s)	831
VspI	ATTAAT	1 cut(s)	513
XapI	RAATTY	1 cut(s)	659
XbaI	TCTAGA	1 cut(s)	277
XceI	RCATGY	1 cut(s)	111
XhoI	CTCGAG	1 cut(s)	54
XmiI	GTMKAC	1 cut(s)	308
XmnI	GAANNNNTTC	2 cut(s)	366, 387
XspI	CTAG	2 cut(s)	221, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.