Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0009042

Physical Location & Seq

Genomic Coordinates Reverse (-)

4219348 .. 4223210

Gene Structure 3863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1054600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGAGGCCAAGCTGCTGATGGCCTCCTCTCCTGCCGCTCTTTCAGCTCCCCATGTTTCCAATTCAAGACCCAATTATTTGTTTCCCTTGAAAGCAATGCAATCCAACAGCTTTGCATGCCTCAATTCCTCCTTACCAAAGAAACCAAATTTGTCTGTCCAGGCTGCTTCGACTTCCATTGGATCATTGGCTACGAAGAAAAGGGTGGATGAAACCGATAGTTTGACACTAGAAGGTATAAGACATTCTTTGATCCGGCAGGAGGATAGCATAATTTTTAGCCTTTTAGAGAGAGCTCAATACTGTCATAATTTGCCTACATACGACCCCAATGCTTTCCCTGTTGAGTGTTTCCATGGCTCCTTGGTAGAACACATTCTTAAAGAAACAGAAAAGCTTCATGGCCAGGTGGGCAGATTCAGCAGTCCTGATGAGCATCCTTTCTTTCCGGATGACGTACCTGAACCAGTGTTGCCACCTCTGCACTACCCTCAGGTACTGCATCCCATTGCCAACTCAATTAATATAAACAGCAAAGTTTGGGAAATGTACTTCAGAGATATTATTCCAAGACTGGTTAAAGAAGGAGATGATGGTAATTACGGTTCAACTGCTGTTTGTGACACAATGTGCTTGCAGGCTCTGTCCAAGCGAATCCACTATGGTAAATTTGTTGCGGAGTGCAAGTTTCAGTCCAATCCAAAGTCCTACGAAGCTGCCATTATCGAACAGAACAGGGACAAGGTGATGGCTTTGTTGACATTTCCGACGGTTGAGGAGGCAATCATAAAGAGGGTAGAAATGAAGGCTAAAACTTACGGGCAAGAAGTGACATTGTACGAAGGGGAAAAGAAAAGTCCCAACCTCGTGTACAAGATAAAACCGACCTTGGTTGCAGATTTATATGGGGAATGGATCATGCCAATGACAAAGGAAGTTCAAGTTGAATACTTGTTAAGAAGGTTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004106 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009636 GO:0009987 GO:0016053 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016853 GO:0016866 GO:0019438 GO:0019752 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0097237 GO:0098754 GO:0098869 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

324

Amino Acids

36.47

Weight (kDa)

6.38

Isoelectric Point (pI)

50.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CM_2	PF01817	202 - 314	7.6e-11	Chorismate mutase type II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29200
fragaria_vesca	FvH4_6g47770 FvH4_6g47770
malus_domestica	MD09G1057700.v1.1 MD09G1058000.v1.1 MD17G1054600.v1.1
prunus_persica	Prupe.3G261500_v2.0.a1
pyrus_communis	pycom111g04790 pycom111g04830 pycom17g05220
rosa_chinensis	RchiOBHm_Chr2g0166931
rosa_laevigata	RLG00000021679
rosa_multiflora	Rmu_sc0002735.1_g000017 Rmu_sc0005344.1_g000010
rosa_roxburghii	Rroxscaffold_2G00084010 Rroxscaffold_2G00084420
rosa_rugosa	Rorug02G0526400
rosa_samantha	Rh2AG593300 Rh2BG604900 Rh2CG575700 Rh2DG616500
rosa_wichuraiana	Rw2G049400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	38
AccIII	TCCGGA	1 cut(s)	448
AciI	CCGC	2 cut(s)	36, 677
AclWI	GGATC	3 cut(s)	190, 247, 923
AcoI	YGGCCR	1 cut(s)	403
AcsI	RAATTY	2 cut(s)	148, 668
AcuI	CTGAAG	1 cut(s)	538
AdeI	CACNNNGTG	1 cut(s)	630
AfaI	GTAC	5 cut(s)	459, 498, 551, 839, 872
AfiI	CCNNNNNNNGG	1 cut(s)	262
AgsI	TTSAA	5 cut(s)	66, 91, 609, 941, 947
AjnI	CCWGG	2 cut(s)	159, 405
AluBI	AGCT	6 cut(s)	13, 47, 111, 296, 397, 716
AluI	AGCT	6 cut(s)	13, 47, 111, 296, 397, 716
Alw21I	GWGCWC	1 cut(s)	298
AlwI	GGATC	3 cut(s)	190, 247, 923
AlwNI	CAGNNNCTG	2 cut(s)	499, 643
Aor13HI	TCCGGA	1 cut(s)	448
AoxI	GGCC	3 cut(s)	6, 21, 403
ApeKI	GCWGC	3 cut(s)	13, 164, 716
ApoI	RAATTY	2 cut(s)	148, 668
AseI	ATTAAT	1 cut(s)	522
Asp700I	GAANNNNTTC	2 cut(s)	375, 396
AsuHPI	GGTGA	1 cut(s)	757
AxyI	CCTNAGG	1 cut(s)	492
BalI	TGGCCA	1 cut(s)	405
BanII	GRGCYC	1 cut(s)	298
BauI	CACGAG	1 cut(s)	866
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	2 cut(s)	151, 703
BccI	CCATC	3 cut(s)	13, 587, 742
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BciT130I	CCWGG	2 cut(s)	161, 407
BfaI	CTAG	1 cut(s)	230
BglI	GCCNNNNNGGC	1 cut(s)	411
BisI	GCNGC	4 cut(s)	14, 36, 165, 717
BlsI	GCNGC	4 cut(s)	15, 37, 166, 718
Bme1390I	CCNGG	2 cut(s)	161, 407
BmiI	GGNNCC	1 cut(s)	361
BmrFI	CCNGG	2 cut(s)	161, 407
BmsI	GCATC	2 cut(s)	445, 511
BsaBI	GATNNNNATC	1 cut(s)	435
BsaJI	CCNNGG	3 cut(s)	355, 363, 888
BsaWI	WCCGGW	1 cut(s)	448
BsaXI	ACNNNNNCTCC	2 cut(s)	671, 701
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	2 cut(s)	467, 579
Bse21I	CCTNAGG	1 cut(s)	492
Bse3DI	GCAATG	2 cut(s)	102, 507
Bse8I	GATNNNNATC	1 cut(s)	435
BseAI	TCCGGA	1 cut(s)	448
BseBI	CCWGG	2 cut(s)	161, 407
BseDI	CCNNGG	3 cut(s)	355, 363, 888
BseGI	GGATG	4 cut(s)	214, 436, 457, 502
BseJI	GATNNNNATC	1 cut(s)	435
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMI	GCAATG	2 cut(s)	102, 507
BseMII	CTCAG	1 cut(s)	506
BseNI	ACTGG	2 cut(s)	467, 579
BseRI	GAGGAG	2 cut(s)	16, 791
BseXI	GCAGC	2 cut(s)	151, 703
BsgI	GTGCAG	1 cut(s)	467
BshFI	GGCC	3 cut(s)	8, 23, 405
BsiHKAI	GWGCWC	1 cut(s)	298
BsiSI	CCGG	2 cut(s)	256, 449
BslFI	GGGAC	2 cut(s)	752, 843
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmFI	GGGAC	2 cut(s)	752, 843
BsnI	GGCC	3 cut(s)	8, 23, 405
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp13I	TCCGGA	1 cut(s)	448
Bsp1407I	TGTACA	1 cut(s)	870
Bsp143I	GATC	3 cut(s)	182, 252, 915
Bsp19I	CCATGG	1 cut(s)	355
BspACI	CCGC	2 cut(s)	36, 677
BspANI	GGCC	3 cut(s)	8, 23, 405
BspCNI	CTCAG	1 cut(s)	505
BspEI	TCCGGA	1 cut(s)	448
BspLI	GGNNCC	1 cut(s)	361
BspPI	GGATC	3 cut(s)	190, 247, 923
BsrBI	CCGCTC	1 cut(s)	38
BsrDI	GCAATG	2 cut(s)	102, 507
BsrGI	TGTACA	1 cut(s)	870
BsrI	ACTGG	2 cut(s)	467, 579
BssECI	CCNNGG	3 cut(s)	355, 363, 888
BssMI	GATC	3 cut(s)	182, 252, 915
BssSI	CACGAG	1 cut(s)	866
BssT1I	CCWWGG	3 cut(s)	355, 363, 888
Bst2BI	CACGAG	1 cut(s)	866
Bst2UI	CCWGG	2 cut(s)	161, 407
Bst4CI	ACNGT	3 cut(s)	305, 605, 772
BstAUI	TGTACA	1 cut(s)	870
BstC8I	GCNNGC	3 cut(s)	118, 635, 639
BstDEI	CTNAG	1 cut(s)	492
BstDSI	CCRYGG	1 cut(s)	355
BstF5I	GGATG	4 cut(s)	214, 436, 457, 502
BstKTI	GATC	3 cut(s)	185, 255, 918
BstMBI	GATC	3 cut(s)	182, 252, 915
BstMWI	GCNNNNNNNGC	5 cut(s)	44, 117, 411, 420, 481
BstNI	CCWGG	2 cut(s)	161, 407
BstNSI	RCATGY	1 cut(s)	120
BstSCI	CCNGG	2 cut(s)	159, 405
BstV1I	GCAGC	2 cut(s)	151, 703
Bsu36I	CCTNAGG	1 cut(s)	492
BsuRI	GGCC	3 cut(s)	8, 23, 405
BtgI	CCRYGG	1 cut(s)	355
BtsCI	GGATG	4 cut(s)	214, 436, 457, 502
BtsIMutI	CAGTG	1 cut(s)	474
Cac8I	GCNNGC	3 cut(s)	118, 635, 639
CaiI	CAGNNNCTG	2 cut(s)	499, 643
Csp6I	GTAC	5 cut(s)	458, 497, 550, 838, 871
CviAII	CATG	5 cut(s)	53, 117, 356, 401, 919
CviQI	GTAC	5 cut(s)	458, 497, 550, 838, 871
DdeI	CTNAG	1 cut(s)	492
DpnI	GATC	3 cut(s)	184, 254, 917
DpnII	GATC	3 cut(s)	182, 252, 915
DraIII	CACNNNGTG	1 cut(s)	630
EaeI	YGGCCR	1 cut(s)	403
Ecl136II	GAGCTC	1 cut(s)	296
Eco130I	CCWWGG	3 cut(s)	355, 363, 888
Eco24I	GRGCYC	1 cut(s)	298
Eco53kI	GAGCTC	1 cut(s)	296
Eco57I	CTGAAG	1 cut(s)	538
Eco81I	CCTNAGG	1 cut(s)	492
EcoICRI	GAGCTC	1 cut(s)	296
EcoRII	CCWGG	2 cut(s)	159, 405
EcoT14I	CCWWGG	3 cut(s)	355, 363, 888
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	3 cut(s)	355, 363, 888
FaeI	CATG	5 cut(s)	56, 120, 359, 404, 922
FalI	AAGNNNNNCTT	2 cut(s)	232, 264
FaqI	GGGAC	2 cut(s)	752, 843
FatI	CATG	5 cut(s)	52, 116, 355, 400, 918
Fnu4HI	GCNGC	4 cut(s)	14, 36, 165, 717
FokI	GGATG	4 cut(s)	221, 423, 464, 489
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	4 cut(s)	14, 36, 165, 717
FspBI	CTAG	1 cut(s)	230
GluI	GCNGC	4 cut(s)	14, 36, 165, 717
HaeIII	GGCC	3 cut(s)	8, 23, 405
HapII	CCGG	2 cut(s)	256, 449
Hin1II	CATG	5 cut(s)	56, 120, 359, 404, 922
HincII	GTYRAC	1 cut(s)	759
HindII	GTYRAC	1 cut(s)	759
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	2 cut(s)	417, 654
HpaII	CCGG	2 cut(s)	256, 449
HphI	GGTGA	1 cut(s)	757
Hpy166II	GTNNAC	2 cut(s)	759, 871
Hpy188I	TCNGA	2 cut(s)	557, 768
Hpy188III	TCNNGA	3 cut(s)	66, 428, 449
Hpy8I	GTNNAC	2 cut(s)	759, 871
Hpy99I	CGWCG	1 cut(s)	772
HpyAV	CCTTC	5 cut(s)	227, 578, 799, 836, 954
HpyCH4III	ACNGT	3 cut(s)	305, 605, 772
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	7 cut(s)	100, 116, 484, 502, 637, 684, 896
HpyF10VI	GCNNNNNNNGC	5 cut(s)	44, 117, 411, 420, 481
HpyF3I	CTNAG	1 cut(s)	492
HpySE526I	ACGT	1 cut(s)	456
Hsp92II	CATG	5 cut(s)	56, 120, 359, 404, 922
Kpn2I	TCCGGA	1 cut(s)	448
Kzo9I	GATC	3 cut(s)	182, 252, 915
LmnI	GCTCC	2 cut(s)	52, 365
Lsp1109I	GCAGC	2 cut(s)	151, 703
LweI	GCATC	2 cut(s)	445, 511
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	1 cut(s)	456
MaeIII	GTNAC	2 cut(s)	620, 829
MalI	GATC	3 cut(s)	184, 254, 917
MbiI	CCGCTC	1 cut(s)	38
MboI	GATC	3 cut(s)	182, 252, 915
MboII	GAAGA	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	298
MlsI	TGGCCA	1 cut(s)	405
MluCI	AATT	9 cut(s)	61, 73, 124, 148, 273, 310, 519, 598, 668
MluNI	TGGCCA	1 cut(s)	405
MmeI	TCCRAC	3 cut(s)	129, 791, 945
Mox20I	TGGCCA	1 cut(s)	405
MroI	TCCGGA	1 cut(s)	448
MroXI	GAANNNNTTC	2 cut(s)	375, 396
MscI	TGGCCA	1 cut(s)	405
MseI	TTAA	4 cut(s)	381, 522, 579, 956
MslI	CAYNNNNRTG	1 cut(s)	923
Msp20I	TGGCCA	1 cut(s)	405
MspI	CCGG	2 cut(s)	256, 449
MspR9I	CCNGG	2 cut(s)	161, 407
MvaI	CCWGG	2 cut(s)	161, 407
MwoI	GCNNNNNNNGC	5 cut(s)	44, 117, 411, 420, 481
NcoI	CCATGG	1 cut(s)	355
NdeII	GATC	3 cut(s)	182, 252, 915
NlaIII	CATG	5 cut(s)	56, 120, 359, 404, 922
NlaIV	GGNNCC	1 cut(s)	361
NmuCI	GTSAC	2 cut(s)	620, 829
NspI	RCATGY	1 cut(s)	120
PaeI	GCATGC	1 cut(s)	120
PdmI	GAANNNNTTC	2 cut(s)	375, 396
PfeI	GAWTC	2 cut(s)	417, 654
PkrI	GCNGC	4 cut(s)	15, 37, 166, 718
PshBI	ATTAAT	1 cut(s)	522
Psp124BI	GAGCTC	1 cut(s)	298
Psp6I	CCWGG	2 cut(s)	159, 405
PspGI	CCWGG	2 cut(s)	159, 405
PspN4I	GGNNCC	1 cut(s)	361
PsrI	GAACNNNNNNTAC	2 cut(s)	589, 621
PstNI	CAGNNNCTG	2 cut(s)	499, 643
RsaI	GTAC	5 cut(s)	459, 498, 551, 839, 872
RsaNI	GTAC	5 cut(s)	458, 497, 550, 838, 871
RseI	CAYNNNNRTG	1 cut(s)	923
SacI	GAGCTC	1 cut(s)	298
SaqAI	TTAA	4 cut(s)	381, 522, 579, 956
SatI	GCNGC	4 cut(s)	14, 36, 165, 717
Sau3AI	GATC	3 cut(s)	182, 252, 915
ScrFI	CCNGG	2 cut(s)	161, 407
SduI	GDGCHC	1 cut(s)	298
SfaNI	GCATC	2 cut(s)	445, 511
SmiMI	CAYNNNNRTG	1 cut(s)	923
SphI	GCATGC	1 cut(s)	120
Sse9I	AATT	9 cut(s)	61, 73, 124, 148, 273, 310, 519, 598, 668
SsiI	CCGC	2 cut(s)	36, 677
SspMI	CTAG	1 cut(s)	230
SstI	GAGCTC	1 cut(s)	298
StyD4I	CCNGG	2 cut(s)	159, 405
StyI	CCWWGG	3 cut(s)	355, 363, 888
TaaI	ACNGT	3 cut(s)	305, 605, 772
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	2 cut(s)	170, 726
TasI	AATT	9 cut(s)	61, 73, 124, 148, 273, 310, 519, 598, 668
TatI	WGTACW	2 cut(s)	549, 870
TauI	GCSGC	1 cut(s)	38
TfiI	GAWTC	2 cut(s)	417, 654
Tru1I	TTAA	4 cut(s)	381, 522, 579, 956
Tru9I	TTAA	4 cut(s)	381, 522, 579, 956
TscAI	CASTG	1 cut(s)	474
TseFI	GTSAC	2 cut(s)	620, 829
TseI	GCWGC	3 cut(s)	13, 164, 716
Tsp45I	GTSAC	2 cut(s)	620, 829
TspDTI	ATGAA	3 cut(s)	225, 389, 818
TspRI	CASTG	1 cut(s)	474
VspI	ATTAAT	1 cut(s)	522
XapI	RAATTY	2 cut(s)	148, 668
XceI	RCATGY	1 cut(s)	120
XcmI	CCANNNNNNNNNTGG	2 cut(s)	16, 184
XmnI	GAANNNNTTC	2 cut(s)	375, 396
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.