Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009042

Physical Location & Seq

Genomic Coordinates Reverse (-)

65651088 .. 65651627

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0526400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCATTGCAGTTCAATTATCATTCCCTACTATTGGTCGTGGTTCTGGCCACGACTACATTCTTAGACATGGCCACTAGCAGTATAGAGTTGAAAGAAACTAAGCTATCCTTGTATTTCCAGGATTTCTCTGCCGGTCCAAATACCTCAGCAGTACCAATTGCAGGTATTGCAGGCAAGCTATGGAGGTTCGATCAGTTTGGAACAGCTATTGTCACGGATGACCGGCTAACTGTAGCCCCGAGTCCGAAATCAGCAACGGTGGGCCGAGGCCAAGGCTTGGCTGTAACATCATCACTAGATGGACGCAATGCCCATGTCTTGTTATCGATTGTGTTCACCAACAAGAGGTACGATGGCAACACTCTAGAGATACAAGGAACTAGTAGGCAATTCGAGGCGGTTAGAGAGGTTTCGGTCGTATCAGGCACCGGGAAGTTTCGGTTCGCTAGAGGATATGCTACATTCGAAACTTATTCTGTGGACCCTACAAATGTATACTCAGTTATACGATTCAATATTACTGTGCAACACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004106 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009636 GO:0009987 GO:0016053 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016853 GO:0016866 GO:0019438 GO:0019752 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0097237 GO:0098754 GO:0098869 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

19.58

Weight (kDa)

9.26

Isoelectric Point (pI)

26.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dirigent	PF03018	34 - 176	4.9e-42	Dirigent-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29200
fragaria_vesca	FvH4_6g47770 FvH4_6g47770
malus_domestica	MD09G1057700.v1.1 MD09G1058000.v1.1 MD17G1054600.v1.1
prunus_persica	Prupe.3G261500_v2.0.a1
pyrus_communis	pycom111g04790 pycom111g04830 pycom17g05220
rosa_chinensis	RchiOBHm_Chr2g0166931
rosa_laevigata	RLG00000021679
rosa_multiflora	Rmu_sc0002735.1_g000017 Rmu_sc0005344.1_g000010
rosa_roxburghii	Rroxscaffold_2G00084010 Rroxscaffold_2G00084420
rosa_rugosa	Rorug02G0526400
rosa_samantha	Rh2AG593300 Rh2BG604900 Rh2CG575700 Rh2DG616500
rosa_wichuraiana	Rw2G049400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	155
AccB1I	GGYRCC	1 cut(s)	428
AccB7I	CCANNNNNTGG	1 cut(s)	280
AccI	GTMKAC	1 cut(s)	498
AciI	CCGC	1 cut(s)	401
AcoI	YGGCCR	2 cut(s)	48, 72
AfaI	GTAC	2 cut(s)	156, 353
AfiI	CCNNNNNNNGG	4 cut(s)	34, 164, 280, 348
AgsI	TTSAA	3 cut(s)	16, 94, 517
AhlI	ACTAGT	1 cut(s)	383
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	3 cut(s)	106, 181, 209
AluI	AGCT	3 cut(s)	106, 181, 209
Ama87I	CYCGRG	1 cut(s)	241
AoxI	GGCC	4 cut(s)	48, 72, 265, 271
AspS9I	GGNCC	3 cut(s)	137, 265, 484
AsuC2I	CCSGG	1 cut(s)	433
AsuHPI	GGTGA	1 cut(s)	331
AsuII	TTCGAA	1 cut(s)	468
AvaI	CYCGRG	1 cut(s)	241
AvaII	GGWCC	2 cut(s)	137, 484
BalI	TGGCCA	2 cut(s)	50, 74
BanI	GGYRCC	1 cut(s)	428
BbvCI	CCTCAGC	1 cut(s)	148
BccI	CCATC	2 cut(s)	296, 350
BciT130I	CCWGG	1 cut(s)	122
BcnI	CCSGG	1 cut(s)	433
BcuI	ACTAGT	1 cut(s)	383
BfaI	CTAG	5 cut(s)	78, 299, 368, 384, 450
BfmI	CTRYAG	1 cut(s)	234
BfuAI	ACCTGC	1 cut(s)	155
Bme1390I	CCNGG	2 cut(s)	122, 433
Bme18I	GGWCC	2 cut(s)	137, 484
BmeT110I	CYCGRG	1 cut(s)	241
BmgT120I	GGNCC	3 cut(s)	137, 265, 484
BmiI	GGNNCC	2 cut(s)	430, 486
BmrFI	CCNGG	2 cut(s)	122, 433
Bpu10I	CCTNAGC	1 cut(s)	148
Bpu14I	TTCGAA	1 cut(s)	468
BpuMI	CCSGG	1 cut(s)	433
Bsa29I	ATCGAT	1 cut(s)	329
BsaJI	CCNNGG	2 cut(s)	268, 274
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 164, 280, 348
Bse118I	RCCGGY	2 cut(s)	134, 225
Bse3DI	GCAATG	2 cut(s)	5, 316
BseBI	CCWGG	1 cut(s)	122
BseCI	ATCGAT	1 cut(s)	329
BseDI	CCNNGG	2 cut(s)	268, 274
BseGI	GGATG	1 cut(s)	226
BseLI	CCNNNNNNNGG	4 cut(s)	34, 164, 280, 348
BseMI	GCAATG	2 cut(s)	5, 316
BseMII	CTCAG	2 cut(s)	162, 516
Bsh1285I	CGRYCG	1 cut(s)	420
BshFI	GGCC	4 cut(s)	50, 74, 267, 273
BshNI	GGYRCC	1 cut(s)	428
BshVI	ATCGAT	1 cut(s)	329
BsiEI	CGRYCG	1 cut(s)	420
BsiHKCI	CYCGRG	1 cut(s)	241
BsiSI	CCGG	3 cut(s)	135, 226, 432
BslI	CCNNNNNNNGG	4 cut(s)	34, 164, 280, 348
BsnI	GGCC	4 cut(s)	50, 74, 267, 273
BsoBI	CYCGRG	1 cut(s)	241
Bsp119I	TTCGAA	1 cut(s)	468
Bsp143I	GATC	1 cut(s)	193
BspACI	CCGC	1 cut(s)	401
BspANI	GGCC	4 cut(s)	50, 74, 267, 273
BspCNI	CTCAG	2 cut(s)	161, 515
BspDI	ATCGAT	1 cut(s)	329
BspLI	GGNNCC	2 cut(s)	430, 486
BspMI	ACCTGC	1 cut(s)	155
BspT104I	TTCGAA	1 cut(s)	468
BspT107I	GGYRCC	1 cut(s)	428
BsrDI	GCAATG	2 cut(s)	5, 316
BsrFI	RCCGGY	2 cut(s)	134, 225
BssAI	RCCGGY	2 cut(s)	134, 225
BssECI	CCNNGG	2 cut(s)	268, 274
BssMI	GATC	1 cut(s)	193
BssNAI	GTATAC	1 cut(s)	499
BssT1I	CCWWGG	1 cut(s)	274
Bst1107I	GTATAC	1 cut(s)	499
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	3 cut(s)	235, 262, 526
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstBI	TTCGAA	1 cut(s)	468
BstC8I	GCNNGC	2 cut(s)	175, 179
BstDEI	CTNAG	4 cut(s)	64, 102, 148, 502
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	1 cut(s)	196
BstMBI	GATC	1 cut(s)	193
BstMCI	CGRYCG	1 cut(s)	420
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	2 cut(s)	120, 431
BstSFI	CTRYAG	1 cut(s)	234
BstZ17I	GTATAC	1 cut(s)	499
Bsu15I	ATCGAT	1 cut(s)	329
BsuRI	GGCC	4 cut(s)	50, 74, 267, 273
BsuTUI	ATCGAT	1 cut(s)	329
BtsCI	GGATG	1 cut(s)	226
BveI	ACCTGC	1 cut(s)	155
Cac8I	GCNNGC	2 cut(s)	175, 179
Cfr10I	RCCGGY	2 cut(s)	134, 225
Cfr13I	GGNCC	3 cut(s)	137, 265, 484
ClaI	ATCGAT	1 cut(s)	329
CseI	GACGC	1 cut(s)	315
Csp6I	GTAC	2 cut(s)	155, 352
CviAII	CATG	2 cut(s)	70, 317
CviQI	GTAC	2 cut(s)	155, 352
DdeI	CTNAG	4 cut(s)	64, 102, 148, 502
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
EaeI	YGGCCR	2 cut(s)	48, 72
Eco130I	CCWWGG	1 cut(s)	274
Eco47I	GGWCC	2 cut(s)	137, 484
Eco88I	CYCGRG	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	274
FaeI	CATG	2 cut(s)	73, 320
FaiI	YATR	7 cut(s)	71, 86, 184, 318, 459, 499, 509
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FatI	CATG	2 cut(s)	69, 316
FblI	GTMKAC	1 cut(s)	498
FokI	GGATG	1 cut(s)	233
FspBI	CTAG	5 cut(s)	78, 299, 368, 384, 450
HaeIII	GGCC	4 cut(s)	50, 74, 267, 273
HapII	CCGG	3 cut(s)	135, 226, 432
HgaI	GACGC	1 cut(s)	315
Hin1II	CATG	2 cut(s)	73, 320
HinfI	GANTC	2 cut(s)	244, 513
HpaII	CCGG	3 cut(s)	135, 226, 432
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	3 cut(s)	339, 484, 499
Hpy188I	TCNGA	1 cut(s)	249
Hpy188III	TCNNGA	1 cut(s)	368
Hpy8I	GTNNAC	3 cut(s)	339, 484, 499
HpyCH4III	ACNGT	3 cut(s)	235, 262, 526
HpyCH4V	TGCA	4 cut(s)	10, 164, 173, 529
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	4 cut(s)	64, 102, 148, 502
Hsp92II	CATG	2 cut(s)	73, 320
Kzo9I	GATC	1 cut(s)	193
LpnPI	CCDG	9 cut(s)	32, 107, 134, 148, 150, 159, 239, 411, 445
MaeI	CTAG	5 cut(s)	78, 299, 368, 384, 450
MaeIII	GTNAC	2 cut(s)	214, 286
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MfeI	CAATTG	1 cut(s)	159
MlsI	TGGCCA	2 cut(s)	50, 74
MluCI	AATT	3 cut(s)	16, 159, 392
MluNI	TGGCCA	2 cut(s)	50, 74
MlyI	GAGTC	1 cut(s)	253
MnlI	CCTC	7 cut(s)	157, 180, 263, 342, 391, 403, 446
Mox20I	TGGCCA	2 cut(s)	50, 74
MscI	TGGCCA	2 cut(s)	50, 74
Msp20I	TGGCCA	2 cut(s)	50, 74
MspI	CCGG	3 cut(s)	135, 226, 432
MspR9I	CCNGG	2 cut(s)	122, 433
MunI	CAATTG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	170
NciI	CCSGG	1 cut(s)	433
NdeII	GATC	1 cut(s)	193
NlaIII	CATG	2 cut(s)	73, 320
NlaIV	GGNNCC	2 cut(s)	430, 486
NmeAIII	GCCGAG	1 cut(s)	293
NmuCI	GTSAC	1 cut(s)	214
NspV	TTCGAA	1 cut(s)	468
PfeI	GAWTC	1 cut(s)	513
PflMI	CCANNNNNTGG	1 cut(s)	280
PfoI	TCCNGGA	1 cut(s)	120
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	2 cut(s)	430, 486
PspPI	GGNCC	3 cut(s)	137, 265, 484
RsaI	GTAC	2 cut(s)	156, 353
RsaNI	GTAC	2 cut(s)	155, 352
Sau3AI	GATC	1 cut(s)	193
Sau96I	GGNCC	3 cut(s)	137, 265, 484
SchI	GAGTC	1 cut(s)	253
ScrFI	CCNGG	2 cut(s)	122, 433
SetI	ASST	8 cut(s)	108, 149, 169, 183, 191, 211, 353, 414
SfcI	CTRYAG	1 cut(s)	234
SfuI	TTCGAA	1 cut(s)	468
SinI	GGWCC	2 cut(s)	137, 484
SpeI	ACTAGT	1 cut(s)	383
Sse9I	AATT	3 cut(s)	16, 159, 392
SsiI	CCGC	1 cut(s)	401
SspI	AATATT	1 cut(s)	520
SspMI	CTAG	5 cut(s)	78, 299, 368, 384, 450
StyD4I	CCNGG	2 cut(s)	120, 431
StyI	CCWWGG	1 cut(s)	274
TaaI	ACNGT	3 cut(s)	235, 262, 526
TaqI	TCGA	4 cut(s)	192, 329, 396, 468
TaqII	GACCGA	1 cut(s)	406
TasI	AATT	3 cut(s)	16, 159, 392
TfiI	GAWTC	1 cut(s)	513
TseFI	GTSAC	1 cut(s)	214
Tsp45I	GTSAC	1 cut(s)	214
TspGWI	ACGGA	1 cut(s)	233
Van91I	CCANNNNNTGG	1 cut(s)	280
VpaK11BI	GGWCC	2 cut(s)	137, 484
XbaI	TCTAGA	1 cut(s)	367
XmiI	GTMKAC	1 cut(s)	498
XspI	CTAG	5 cut(s)	78, 299, 368, 384, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.