Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009042

Physical Location & Seq

Genomic Coordinates Forward (+)

24744025 .. 24747357

Gene Structure 3333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G261500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGAGGCTAAGCTGTTAATGGCCTCCTCTCCTGCCACTCTTTCAGTTCCCCATGCTTCTAATTCAAGAATCAATCGCATATTGCCATTGAAAGCAATGAAATCTAACAGCTTAACCTGCCTCAATTCAGGCTTACCAAAGAAAGGAACTTTATCTGTTCAGGCTTCTGCAACTTCCATTGGATCATTGGCTACAAAGAAGAGGGTGGATGAAACTGATAATTTAACCCTAGAAGGTATAAGACATTCCTTAATCCGGCAGGAGGATAGCATAATTTTTGGCCTTTTAGAGAGAGCTCAATATTGTCATAATATGCCTACTTATGACTCCAATGCTTTCCCTATGGTCGGGTTCCACGGCTCCCTGGTAGAATACATTCTTCAAGAAACAGAAAAACTTCATGGTCAGGTTGGTAGATACAGCAGTCCTGATGAGCACCCATTCTTTCCGGATGTCCTACCTGAACCAGTGTTGCCACCTCTGCACTACCCTCAGGTACTACATCCCATTGCCAATTCAATTAATATAAATCACAAAGTTTGGGAAATGTACTTCAGAGATATTCTTCCAAGACTGGTGAAGGAAGGAGATGATGGTAATTTTGGATCAACTGCTGTTTGTGATACAATGTGCTTGCAGGCTCTGTCAAAGAGAATCCACTATGGTAAATTTGTAGCGGAGTGTAAGTTTCGATCCAATCCAAAGTCCTATGAAGCTGCCATTATCGAACAGAACAGGGAGAAGGTGATGGCTTTGTTGACATATCCAACGGTCGAGGAGGCAATCATAAAGAGAGTAGAAATGAAGGCCAAAACTTATGGGCAAGAGGTGACCTTGTACAAAGAGGAAAAAGAGAAAACCGACCTTGTTTATAAGATACAACCAGCCTTGGTTGCAGATTTATATGGGGATTGGATCATGCCAATGACAAAGGAAGTTCAAGTTGAATACTTGTTAAGAAGGCTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004106 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009636 GO:0009987 GO:0016053 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016853 GO:0016866 GO:0019438 GO:0019752 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0097237 GO:0098754 GO:0098869 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

324

Amino Acids

36.56

Weight (kDa)

6.8

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29200
fragaria_vesca	FvH4_6g47770 FvH4_6g47770
malus_domestica	MD09G1057700.v1.1 MD09G1058000.v1.1 MD17G1054600.v1.1
prunus_persica	Prupe.3G261500_v2.0.a1
pyrus_communis	pycom111g04790 pycom111g04830 pycom17g05220
rosa_chinensis	RchiOBHm_Chr2g0166931
rosa_laevigata	RLG00000021679
rosa_multiflora	Rmu_sc0002735.1_g000017 Rmu_sc0005344.1_g000010
rosa_roxburghii	Rroxscaffold_2G00084010 Rroxscaffold_2G00084420
rosa_rugosa	Rorug02G0526400
rosa_samantha	Rh2AG593300 Rh2BG604900 Rh2CG575700 Rh2DG616500
rosa_wichuraiana	Rw2G049400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	873
Acc36I	ACCTGC	1 cut(s)	125
AccIII	TCCGGA	1 cut(s)	448
AciI	CCGC	1 cut(s)	677
AclWI	GGATC	4 cut(s)	190, 613, 687, 923
AcsI	RAATTY	1 cut(s)	668
AcuI	CTGAAG	1 cut(s)	538
AfaI	GTAC	3 cut(s)	498, 551, 839
AfiI	CCNNNNNNNGG	4 cut(s)	143, 255, 262, 347
AgsI	TTSAA	6 cut(s)	66, 91, 383, 519, 941, 947
AjnI	CCWGG	1 cut(s)	363
AluBI	AGCT	4 cut(s)	13, 111, 296, 716
AluI	AGCT	4 cut(s)	13, 111, 296, 716
Alw21I	GWGCWC	2 cut(s)	298, 438
AlwI	GGATC	4 cut(s)	190, 613, 687, 923
AlwNI	CAGNNNCTG	1 cut(s)	643
Aor13HI	TCCGGA	1 cut(s)	448
AoxI	GGCC	3 cut(s)	21, 280, 807
ApeKI	GCWGC	1 cut(s)	716
ApoI	RAATTY	1 cut(s)	668
AseI	ATTAAT	1 cut(s)	522
Asp700I	GAANNNNTTC	2 cut(s)	375, 396
AsuHPI	GGTGA	3 cut(s)	589, 757, 841
AxyI	CCTNAGG	1 cut(s)	492
BaeI	ACNNNNGTAYC	2 cut(s)	409, 442
BanII	GRGCYC	1 cut(s)	298
Bbv12I	GWGCWC	2 cut(s)	298, 438
BbvI	GCAGC	1 cut(s)	703
BccI	CCATC	2 cut(s)	587, 742
BceAI	ACGGC	1 cut(s)	373
BciT130I	CCWGG	1 cut(s)	365
BfaI	CTAG	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	125
BisI	GCNGC	1 cut(s)	717
BlpI	GCTNAGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	718
Bme1390I	CCNGG	1 cut(s)	365
BmiI	GGNNCC	2 cut(s)	353, 361
BmrFI	CCNGG	1 cut(s)	365
Bpu1102I	GCTNAGC	1 cut(s)	9
BsaJI	CCNNGG	3 cut(s)	355, 363, 888
BsaWI	WCCGGW	1 cut(s)	448
BsaXI	ACNNNNNCTCC	2 cut(s)	671, 701
Bsc4I	CCNNNNNNNGG	4 cut(s)	143, 255, 262, 347
Bse1I	ACTGG	2 cut(s)	467, 579
Bse21I	CCTNAGG	1 cut(s)	492
Bse3DI	GCAATG	2 cut(s)	102, 507
BseAI	TCCGGA	1 cut(s)	448
BseBI	CCWGG	1 cut(s)	365
BseDI	CCNNGG	3 cut(s)	355, 363, 888
BseGI	GGATG	3 cut(s)	214, 457, 502
BseLI	CCNNNNNNNGG	4 cut(s)	143, 255, 262, 347
BseMI	GCAATG	2 cut(s)	102, 507
BseMII	CTCAG	1 cut(s)	506
BseNI	ACTGG	2 cut(s)	467, 579
BseRI	GAGGAG	2 cut(s)	16, 791
BseXI	GCAGC	1 cut(s)	703
BsgI	GTGCAG	1 cut(s)	467
Bsh1285I	CGRYCG	1 cut(s)	774
BshFI	GGCC	3 cut(s)	23, 282, 809
BsiEI	CGRYCG	1 cut(s)	774
BsiHKAI	GWGCWC	2 cut(s)	298, 438
BsiSI	CCGG	2 cut(s)	256, 449
BslI	CCNNNNNNNGG	4 cut(s)	143, 255, 262, 347
BsnI	GGCC	3 cut(s)	23, 282, 809
Bsp1286I	GDGCHC	2 cut(s)	298, 438
Bsp13I	TCCGGA	1 cut(s)	448
Bsp1407I	TGTACA	1 cut(s)	837
Bsp143I	GATC	4 cut(s)	182, 605, 692, 915
Bsp1720I	GCTNAGC	1 cut(s)	9
BspACI	CCGC	1 cut(s)	677
BspANI	GGCC	3 cut(s)	23, 282, 809
BspCNI	CTCAG	1 cut(s)	505
BspEI	TCCGGA	1 cut(s)	448
BspLI	GGNNCC	2 cut(s)	353, 361
BspMI	ACCTGC	1 cut(s)	125
BspPI	GGATC	4 cut(s)	190, 613, 687, 923
BsrDI	GCAATG	2 cut(s)	102, 507
BsrGI	TGTACA	1 cut(s)	837
BsrI	ACTGG	2 cut(s)	467, 579
BssECI	CCNNGG	3 cut(s)	355, 363, 888
BssMI	GATC	4 cut(s)	182, 605, 692, 915
BssT1I	CCWWGG	1 cut(s)	888
Bst2UI	CCWGG	1 cut(s)	365
Bst4CI	ACNGT	1 cut(s)	772
Bst6I	CTCTTC	1 cut(s)	194
BstAUI	TGTACA	1 cut(s)	837
BstC8I	GCNNGC	2 cut(s)	635, 639
BstDEI	CTNAG	2 cut(s)	9, 492
BstDSI	CCRYGG	1 cut(s)	355
BstEII	GGTNACC	1 cut(s)	829
BstF5I	GGATG	3 cut(s)	214, 457, 502
BstKTI	GATC	4 cut(s)	185, 608, 695, 918
BstMBI	GATC	4 cut(s)	182, 605, 692, 915
BstMCI	CGRYCG	1 cut(s)	774
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 481, 893
BstNI	CCWGG	1 cut(s)	365
BstPI	GGTNACC	1 cut(s)	829
BstSCI	CCNGG	1 cut(s)	363
BstV1I	GCAGC	1 cut(s)	703
Bsu36I	CCTNAGG	1 cut(s)	492
BsuRI	GGCC	3 cut(s)	23, 282, 809
BtgI	CCRYGG	1 cut(s)	355
BtsCI	GGATG	3 cut(s)	214, 457, 502
BtsIMutI	CAGTG	1 cut(s)	474
BveI	ACCTGC	1 cut(s)	125
Cac8I	GCNNGC	2 cut(s)	635, 639
CaiI	CAGNNNCTG	1 cut(s)	643
Csp6I	GTAC	3 cut(s)	497, 550, 838
CviAII	CATG	3 cut(s)	53, 401, 919
CviQI	GTAC	3 cut(s)	497, 550, 838
DdeI	CTNAG	2 cut(s)	9, 492
DpnI	GATC	4 cut(s)	184, 607, 694, 917
DpnII	GATC	4 cut(s)	182, 605, 692, 915
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
Ecl136II	GAGCTC	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	888
Eco24I	GRGCYC	1 cut(s)	298
Eco53kI	GAGCTC	1 cut(s)	296
Eco57I	CTGAAG	1 cut(s)	538
Eco81I	CCTNAGG	1 cut(s)	492
Eco91I	GGTNACC	1 cut(s)	829
EcoICRI	GAGCTC	1 cut(s)	296
EcoO65I	GGTNACC	1 cut(s)	829
EcoRII	CCWGG	1 cut(s)	363
EcoT14I	CCWWGG	1 cut(s)	888
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	888
FaeI	CATG	3 cut(s)	56, 404, 922
FatI	CATG	3 cut(s)	52, 400, 918
Fnu4HI	GCNGC	1 cut(s)	717
FokI	GGATG	3 cut(s)	221, 464, 489
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	1 cut(s)	717
FspBI	CTAG	1 cut(s)	230
GluI	GCNGC	1 cut(s)	717
HaeIII	GGCC	3 cut(s)	23, 282, 809
HapII	CCGG	2 cut(s)	256, 449
Hin1II	CATG	3 cut(s)	56, 404, 922
HincII	GTYRAC	1 cut(s)	759
HindII	GTYRAC	1 cut(s)	759
HinfI	GANTC	3 cut(s)	69, 326, 654
HpaII	CCGG	2 cut(s)	256, 449
HphI	GGTGA	3 cut(s)	589, 757, 841
Hpy166II	GTNNAC	1 cut(s)	759
Hpy188I	TCNGA	1 cut(s)	557
Hpy188III	TCNNGA	4 cut(s)	66, 383, 428, 449
Hpy8I	GTNNAC	1 cut(s)	759
HpyAV	CCTTC	6 cut(s)	227, 574, 578, 736, 799, 954
HpyCH4III	ACNGT	1 cut(s)	772
HpyCH4V	TGCA	4 cut(s)	170, 484, 637, 896
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 481, 893
HpyF3I	CTNAG	2 cut(s)	9, 492
Hsp92II	CATG	3 cut(s)	56, 404, 922
Kpn2I	TCCGGA	1 cut(s)	448
Kzo9I	GATC	4 cut(s)	182, 605, 692, 915
LmnI	GCTCC	1 cut(s)	365
Lsp1109I	GCAGC	1 cut(s)	703
MaeI	CTAG	1 cut(s)	230
MaeIII	GTNAC	1 cut(s)	829
MalI	GATC	4 cut(s)	184, 607, 694, 917
MboI	GATC	4 cut(s)	182, 605, 692, 915
MboII	GAAGA	3 cut(s)	211, 371, 557
MhlI	GDGCHC	2 cut(s)	298, 438
MluCI	AATT	8 cut(s)	61, 124, 220, 273, 514, 519, 598, 668
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	1 cut(s)	791
MroI	TCCGGA	1 cut(s)	448
MroXI	GAANNNNTTC	2 cut(s)	375, 396
MseI	TTAA	6 cut(s)	17, 113, 224, 251, 522, 956
MslI	CAYNNNNRTG	1 cut(s)	923
MspI	CCGG	2 cut(s)	256, 449
MspR9I	CCNGG	1 cut(s)	365
MvaI	CCWGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	3 cut(s)	117, 481, 893
NdeII	GATC	4 cut(s)	182, 605, 692, 915
NlaIII	CATG	3 cut(s)	56, 404, 922
NlaIV	GGNNCC	2 cut(s)	353, 361
NmuCI	GTSAC	1 cut(s)	829
PdmI	GAANNNNTTC	2 cut(s)	375, 396
PfeI	GAWTC	2 cut(s)	69, 654
PkrI	GCNGC	1 cut(s)	718
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
PshBI	ATTAAT	1 cut(s)	522
PsiI	TTATAA	1 cut(s)	873
Psp124BI	GAGCTC	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	363
PspEI	GGTNACC	1 cut(s)	829
PspGI	CCWGG	1 cut(s)	363
PspN4I	GGNNCC	2 cut(s)	353, 361
PstNI	CAGNNNCTG	1 cut(s)	643
RsaI	GTAC	3 cut(s)	498, 551, 839
RsaNI	GTAC	3 cut(s)	497, 550, 838
RseI	CAYNNNNRTG	1 cut(s)	923
SacI	GAGCTC	1 cut(s)	298
SaqAI	TTAA	6 cut(s)	17, 113, 224, 251, 522, 956
SatI	GCNGC	1 cut(s)	717
Sau3AI	GATC	4 cut(s)	182, 605, 692, 915
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	1 cut(s)	365
SduI	GDGCHC	2 cut(s)	298, 438
SmiMI	CAYNNNNRTG	1 cut(s)	923
Sse9I	AATT	8 cut(s)	61, 124, 220, 273, 514, 519, 598, 668
SsiI	CCGC	1 cut(s)	677
SspI	AATATT	1 cut(s)	302
SspMI	CTAG	1 cut(s)	230
SstI	GAGCTC	1 cut(s)	298
StyD4I	CCNGG	1 cut(s)	363
StyI	CCWWGG	1 cut(s)	888
TaaI	ACNGT	1 cut(s)	772
TaqI	TCGA	3 cut(s)	691, 726, 774
TasI	AATT	8 cut(s)	61, 124, 220, 273, 514, 519, 598, 668
TatI	WGTACW	2 cut(s)	549, 837
TfiI	GAWTC	2 cut(s)	69, 654
Tru1I	TTAA	6 cut(s)	17, 113, 224, 251, 522, 956
Tru9I	TTAA	6 cut(s)	17, 113, 224, 251, 522, 956
TscAI	CASTG	1 cut(s)	474
TseFI	GTSAC	1 cut(s)	829
TseI	GCWGC	1 cut(s)	716
Tsp45I	GTSAC	1 cut(s)	829
TspDTI	ATGAA	5 cut(s)	113, 225, 389, 726, 818
TspRI	CASTG	1 cut(s)	474
VspI	ATTAAT	1 cut(s)	522
XapI	RAATTY	1 cut(s)	668
XcmI	CCANNNNNNNNNTGG	1 cut(s)	184
XmnI	GAANNNNTTC	2 cut(s)	375, 396
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.