Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009042

Physical Location & Seq

Genomic Coordinates Reverse (-)

3828804 .. 3830228

Gene Structure 1425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1058000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGAGGCCAAGCTGCTGATGGCCTCCTCTCCTGCCACTCTTTCATCTCCCCACGTTTCCAGTTCAAGACCCAATTATTTACTGCCTTTGAAAGCAATGAAATCCAACAGTTTCGCATGCCTCAGTTCTTCCTTGCCAAAAAAACAGAATTTGTCTGTCCAGGCTGCTTCGACCTCCATTGGATCATTGGCTACAAAGGAAAGGGTGGATGAAACCGATAGTTTGACGCTAGAAGGTATAAGACATTCTTTGATCCGGCAGGAGGATAGCATAATTTTTAGCCTGTTAGAGAGAGCTCAATATTGTCATAATTTGCCTACATATGAACCCAAAGCTTTCCCCGTTGATGGGTTCCATGGCTCCTTGGTAGAACACATTCTTAAAGAAACAGAAAAACGTCATGGCCAGGTGGGAAGATTCAGCAGTCCTGATGAGCATCCTTTCTTTCCGAATGACGTACCTGAACCAGTGTTGCCACCTCTGCACTACCCCCAGGTAATATATAACATACATTTGGAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004106 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009636 GO:0009987 GO:0016053 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016853 GO:0016866 GO:0019438 GO:0019752 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0097237 GO:0098754 GO:0098869 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

19.39

Weight (kDa)

6.29

Isoelectric Point (pI)

67.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29200
fragaria_vesca	FvH4_6g47770 FvH4_6g47770
malus_domestica	MD09G1057700.v1.1 MD09G1058000.v1.1 MD17G1054600.v1.1
prunus_persica	Prupe.3G261500_v2.0.a1
pyrus_communis	pycom111g04790 pycom111g04830 pycom17g05220
rosa_chinensis	RchiOBHm_Chr2g0166931
rosa_laevigata	RLG00000021679
rosa_multiflora	Rmu_sc0002735.1_g000017 Rmu_sc0005344.1_g000010
rosa_roxburghii	Rroxscaffold_2G00084010 Rroxscaffold_2G00084420
rosa_rugosa	Rorug02G0526400
rosa_samantha	Rh2AG593300 Rh2BG604900 Rh2CG575700 Rh2DG616500
rosa_wichuraiana	Rw2G049400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	190, 247
AcoI	YGGCCR	1 cut(s)	403
AcsI	RAATTY	1 cut(s)	148
AfaI	GTAC	1 cut(s)	459
AfiI	CCNNNNNNNGG	3 cut(s)	262, 347, 348
AgsI	TTSAA	2 cut(s)	66, 91
AjnI	CCWGG	3 cut(s)	159, 405, 492
AluBI	AGCT	3 cut(s)	13, 296, 335
AluI	AGCT	3 cut(s)	13, 296, 335
Alw21I	GWGCWC	1 cut(s)	298
AlwI	GGATC	2 cut(s)	190, 247
AoxI	GGCC	3 cut(s)	6, 21, 403
ApeKI	GCWGC	2 cut(s)	13, 164
ApoI	RAATTY	1 cut(s)	148
Asp700I	GAANNNNTTC	1 cut(s)	375
BalI	TGGCCA	1 cut(s)	405
BanII	GRGCYC	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	2 cut(s)	13, 341
BciT130I	CCWGG	3 cut(s)	161, 407, 494
BfaI	CTAG	1 cut(s)	230
BisI	GCNGC	2 cut(s)	14, 165
BlsI	GCNGC	2 cut(s)	15, 166
Bme1390I	CCNGG	3 cut(s)	161, 407, 494
BmiI	GGNNCC	2 cut(s)	353, 361
BmrFI	CCNGG	3 cut(s)	161, 407, 494
BmsI	GCATC	1 cut(s)	445
BsaBI	GATNNNNATC	1 cut(s)	435
BsaJI	CCNNGG	3 cut(s)	355, 363, 492
Bsc4I	CCNNNNNNNGG	3 cut(s)	262, 347, 348
Bse1I	ACTGG	2 cut(s)	60, 467
Bse3DI	GCAATG	1 cut(s)	102
Bse8I	GATNNNNATC	1 cut(s)	435
BseBI	CCWGG	3 cut(s)	161, 407, 494
BseDI	CCNNGG	3 cut(s)	355, 363, 492
BseGI	GGATG	2 cut(s)	214, 436
BseJI	GATNNNNATC	1 cut(s)	435
BseLI	CCNNNNNNNGG	3 cut(s)	262, 347, 348
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	136
BseNI	ACTGG	2 cut(s)	60, 467
BseRI	GAGGAG	1 cut(s)	16
BseXI	GCAGC	1 cut(s)	151
BsgI	GTGCAG	1 cut(s)	467
BshFI	GGCC	3 cut(s)	8, 23, 405
BsiHKAI	GWGCWC	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	256
BslI	CCNNNNNNNGG	3 cut(s)	262, 347, 348
BsnI	GGCC	3 cut(s)	8, 23, 405
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	2 cut(s)	182, 252
Bsp19I	CCATGG	1 cut(s)	355
BspANI	GGCC	3 cut(s)	8, 23, 405
BspCNI	CTCAG	1 cut(s)	135
BspLI	GGNNCC	2 cut(s)	353, 361
BspPI	GGATC	2 cut(s)	190, 247
BsrDI	GCAATG	1 cut(s)	102
BsrI	ACTGG	2 cut(s)	60, 467
BssECI	CCNNGG	3 cut(s)	355, 363, 492
BssMI	GATC	2 cut(s)	182, 252
BssT1I	CCWWGG	2 cut(s)	355, 363
Bst2UI	CCWGG	3 cut(s)	161, 407, 494
Bst4CI	ACNGT	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	1 cut(s)	122
BstDSI	CCRYGG	1 cut(s)	355
BstF5I	GGATG	2 cut(s)	214, 436
BstKTI	GATC	2 cut(s)	185, 255
BstMBI	GATC	2 cut(s)	182, 252
BstMWI	GCNNNNNNNGC	1 cut(s)	481
BstNI	CCWGG	3 cut(s)	161, 407, 494
BstNSI	RCATGY	1 cut(s)	120
BstSCI	CCNGG	3 cut(s)	159, 405, 492
BstV1I	GCAGC	1 cut(s)	151
BsuRI	GGCC	3 cut(s)	8, 23, 405
BtgI	CCRYGG	1 cut(s)	355
BtsCI	GGATG	2 cut(s)	214, 436
BtsIMutI	CAGTG	1 cut(s)	474
Cac8I	GCNNGC	1 cut(s)	118
CseI	GACGC	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	458
CviAII	CATG	3 cut(s)	117, 356, 401
CviQI	GTAC	1 cut(s)	458
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	2 cut(s)	184, 254
DpnII	GATC	2 cut(s)	182, 252
EaeI	YGGCCR	1 cut(s)	403
Ecl136II	GAGCTC	1 cut(s)	296
Eco130I	CCWWGG	2 cut(s)	355, 363
Eco24I	GRGCYC	1 cut(s)	298
Eco53kI	GAGCTC	1 cut(s)	296
EcoICRI	GAGCTC	1 cut(s)	296
EcoRII	CCWGG	3 cut(s)	159, 405, 492
EcoT14I	CCWWGG	2 cut(s)	355, 363
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	2 cut(s)	355, 363
FaeI	CATG	3 cut(s)	120, 359, 404
FalI	AAGNNNNNCTT	2 cut(s)	232, 264
FatI	CATG	3 cut(s)	116, 355, 400
FauNDI	CATATG	1 cut(s)	322
Fnu4HI	GCNGC	2 cut(s)	14, 165
FokI	GGATG	2 cut(s)	221, 423
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	2 cut(s)	14, 165
FspBI	CTAG	1 cut(s)	230
GluI	GCNGC	2 cut(s)	14, 165
HaeIII	GGCC	3 cut(s)	8, 23, 405
HapII	CCGG	1 cut(s)	256
HgaI	GACGC	1 cut(s)	235
Hin1II	CATG	3 cut(s)	120, 359, 404
HindIII	AAGCTT	1 cut(s)	333
HinfI	GANTC	1 cut(s)	417
HpaII	CCGG	1 cut(s)	256
Hpy188I	TCNGA	1 cut(s)	450
Hpy188III	TCNNGA	2 cut(s)	66, 428
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4IV	ACGT	3 cut(s)	54, 397, 456
HpyCH4V	TGCA	1 cut(s)	484
HpyF10VI	GCNNNNNNNGC	1 cut(s)	481
HpyF3I	CTNAG	1 cut(s)	122
HpySE526I	ACGT	3 cut(s)	54, 397, 456
Hsp92II	CATG	3 cut(s)	120, 359, 404
Kzo9I	GATC	2 cut(s)	182, 252
LmnI	GCTCC	1 cut(s)	365
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	1 cut(s)	445
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	3 cut(s)	54, 397, 456
MalI	GATC	2 cut(s)	184, 254
MboI	GATC	2 cut(s)	182, 252
MboII	GAAGA	2 cut(s)	120, 426
MhlI	GDGCHC	1 cut(s)	298
MlsI	TGGCCA	1 cut(s)	405
MluCI	AATT	4 cut(s)	73, 148, 273, 310
MluNI	TGGCCA	1 cut(s)	405
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	6 cut(s)	34, 37, 131, 184, 256, 489
Mox20I	TGGCCA	1 cut(s)	405
MroXI	GAANNNNTTC	1 cut(s)	375
MscI	TGGCCA	1 cut(s)	405
MseI	TTAA	1 cut(s)	381
Msp20I	TGGCCA	1 cut(s)	405
MspI	CCGG	1 cut(s)	256
MspR9I	CCNGG	3 cut(s)	161, 407, 494
MvaI	CCWGG	3 cut(s)	161, 407, 494
MwoI	GCNNNNNNNGC	1 cut(s)	481
NcoI	CCATGG	1 cut(s)	355
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	2 cut(s)	182, 252
NlaIII	CATG	3 cut(s)	120, 359, 404
NlaIV	GGNNCC	2 cut(s)	353, 361
NspI	RCATGY	1 cut(s)	120
PaeI	GCATGC	1 cut(s)	120
PdmI	GAANNNNTTC	1 cut(s)	375
PfeI	GAWTC	1 cut(s)	417
PkrI	GCNGC	2 cut(s)	15, 166
Psp124BI	GAGCTC	1 cut(s)	298
Psp6I	CCWGG	3 cut(s)	159, 405, 492
PspGI	CCWGG	3 cut(s)	159, 405, 492
PspN4I	GGNNCC	2 cut(s)	353, 361
RsaI	GTAC	1 cut(s)	459
RsaNI	GTAC	1 cut(s)	458
SacI	GAGCTC	1 cut(s)	298
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	2 cut(s)	14, 165
Sau3AI	GATC	2 cut(s)	182, 252
ScrFI	CCNGG	3 cut(s)	161, 407, 494
SduI	GDGCHC	1 cut(s)	298
SfaNI	GCATC	1 cut(s)	445
SphI	GCATGC	1 cut(s)	120
Sse9I	AATT	4 cut(s)	73, 148, 273, 310
SspI	AATATT	1 cut(s)	302
SspMI	CTAG	1 cut(s)	230
SstI	GAGCTC	1 cut(s)	298
StyD4I	CCNGG	3 cut(s)	159, 405, 492
StyI	CCWWGG	2 cut(s)	355, 363
TaaI	ACNGT	1 cut(s)	110
TaiI	ACGT	3 cut(s)	57, 400, 459
TaqI	TCGA	1 cut(s)	170
TasI	AATT	4 cut(s)	73, 148, 273, 310
TfiI	GAWTC	1 cut(s)	417
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	1 cut(s)	474
TseI	GCWGC	2 cut(s)	13, 164
TspDTI	ATGAA	4 cut(s)	33, 113, 225, 339
TspRI	CASTG	1 cut(s)	474
XapI	RAATTY	1 cut(s)	148
XceI	RCATGY	1 cut(s)	120
XcmI	CCANNNNNNNNNTGG	2 cut(s)	16, 184
XmnI	GAANNNNTTC	1 cut(s)	375
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.