Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005344.1

Orthogroup ID

OG0009042

Physical Location & Seq

Genomic Coordinates Forward (+)

36616 .. 38095

Gene Structure 1480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005344.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atggaggctaaactgtttagggcctcctcctcttctgcgattcttgctgctcctcgagcttcgcgattcgattacgcggtggccctgaggaaaagtatcagcttcccatgcgtcagctcaggcttagctaagaaaggaaatctgtcagttcaggccaccgcaacttcaactggatcgttggcctcaaggaatagggtggatgaaactgataatttgaccctagaaggtataagacactctttgattcgtcaggaggatagcatcatatttagccttctagagagatctcagtattgtcataatgggtctacatatgaccccaatgctttccctatggatgggttccagggctcattggtagaatacatgcttcaagaaacagaaaaactgcatgctgtggtcggtagatacagcagtcccgatgagcatcctttctttccagatcaactgcctgctccagttttgccacctctgcaataccctcaggtatatatatggagacattatgaacttttaacagttactatgcagccaactgccaacctatggaaaacaccttatagtactttcaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004106 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009636 GO:0009987 GO:0016053 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016853 GO:0016866 GO:0019438 GO:0019752 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0097237 GO:0098754 GO:0098869 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

21.39

Weight (kDa)

6.96

Isoelectric Point (pI)

51.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29200
fragaria_vesca	FvH4_6g47770 FvH4_6g47770
malus_domestica	MD09G1057700.v1.1 MD09G1058000.v1.1 MD17G1054600.v1.1
prunus_persica	Prupe.3G261500_v2.0.a1
pyrus_communis	pycom111g04790 pycom111g04830 pycom17g05220
rosa_chinensis	RchiOBHm_Chr2g0166931
rosa_laevigata	RLG00000021679
rosa_multiflora	Rmu_sc0002735.1_g000017 Rmu_sc0005344.1_g000010
rosa_roxburghii	Rroxscaffold_2G00084010 Rroxscaffold_2G00084420
rosa_rugosa	Rorug02G0526400
rosa_samantha	Rh2AG593300 Rh2BG604900 Rh2CG575700 Rh2DG616500
rosa_wichuraiana	Rw2G049400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	546
AccI	GTMKAC	1 cut(s)	308
AccII	CGCG	2 cut(s)	64, 77
AciI	CCGC	2 cut(s)	77, 159
AclWI	GGATC	1 cut(s)	181
AfaI	GTAC	1 cut(s)	565
AfiI	CCNNNNNNNGG	2 cut(s)	338, 546
AgsI	TTSAA	3 cut(s)	168, 374, 571
AjnI	CCWGG	1 cut(s)	345
AluBI	AGCT	4 cut(s)	59, 102, 117, 128
AluI	AGCT	4 cut(s)	59, 102, 117, 128
Alw26I	GTCTC	1 cut(s)	493
AlwI	GGATC	1 cut(s)	181
Ama87I	CYCGRG	1 cut(s)	54
AoxI	GGCC	4 cut(s)	21, 81, 153, 180
ApeKI	GCWGC	2 cut(s)	47, 529
AspS9I	GGNCC	2 cut(s)	21, 82
AvaI	CYCGRG	1 cut(s)	54
AxyI	CCTNAGG	2 cut(s)	86, 483
BaeI	ACNNNNGTAYC	2 cut(s)	400, 433
BanII	GRGCYC	1 cut(s)	353
BbvI	GCAGC	2 cut(s)	34, 541
BccI	CCATC	1 cut(s)	332
BciT130I	CCWGG	1 cut(s)	347
BcoDI	GTCTC	1 cut(s)	493
BfaI	CTAG	2 cut(s)	221, 278
BglII	AGATCT	1 cut(s)	284
BisI	GCNGC	2 cut(s)	48, 530
BlpI	GCTNAGC	1 cut(s)	124
BlsI	GCNGC	2 cut(s)	49, 531
BmcAI	AGTACT	1 cut(s)	565
Bme1390I	CCNGG	1 cut(s)	347
BmeT110I	CYCGRG	1 cut(s)	54
BmgT120I	GGNCC	2 cut(s)	21, 82
BmiI	GGNNCC	1 cut(s)	344
BmrFI	CCNGG	1 cut(s)	347
BmsI	GCATC	2 cut(s)	270, 436
BpmI	CTGGAG	1 cut(s)	441
Bpu10I	CCTNAGC	1 cut(s)	118
Bpu1102I	GCTNAGC	1 cut(s)	124
BpuEI	CTTGAG	1 cut(s)	169
BsaBI	GATNNNNATC	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	2 cut(s)	338, 546
Bse1I	ACTGG	2 cut(s)	175, 458
Bse21I	CCTNAGG	2 cut(s)	86, 483
Bse8I	GATNNNNATC	1 cut(s)	426
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	1 cut(s)	346
BseGI	GGATG	3 cut(s)	205, 343, 427
BseJI	GATNNNNATC	1 cut(s)	426
BseLI	CCNNNNNNNGG	2 cut(s)	338, 546
BseMII	CTCAG	4 cut(s)	77, 132, 302, 497
BseNI	ACTGG	2 cut(s)	175, 458
BseRI	GAGGAG	3 cut(s)	16, 19, 42
BseXI	GCAGC	2 cut(s)	34, 541
Bsh1236I	CGCG	2 cut(s)	64, 77
BshFI	GGCC	4 cut(s)	23, 83, 155, 182
BsiHKCI	CYCGRG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	402
BslI	CCNNNNNNNGG	2 cut(s)	338, 546
BsmAI	GTCTC	1 cut(s)	493
BsmFI	GGGAC	1 cut(s)	402
BsnI	GGCC	4 cut(s)	23, 83, 155, 182
BsoBI	CYCGRG	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	3 cut(s)	173, 284, 442
Bsp1720I	GCTNAGC	1 cut(s)	124
Bsp68I	TCGCGA	1 cut(s)	64
BspACI	CCGC	2 cut(s)	77, 159
BspANI	GGCC	4 cut(s)	23, 83, 155, 182
BspCNI	CTCAG	4 cut(s)	78, 131, 301, 496
BspFNI	CGCG	2 cut(s)	64, 77
BspLI	GGNNCC	1 cut(s)	344
BspPI	GGATC	1 cut(s)	181
BsrI	ACTGG	2 cut(s)	175, 458
BssECI	CCNNGG	1 cut(s)	346
BssMI	GATC	3 cut(s)	173, 284, 442
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	2 cut(s)	15, 520
Bst6I	CTCTTC	1 cut(s)	37
BstC8I	GCNNGC	2 cut(s)	393, 453
BstDEI	CTNAG	6 cut(s)	86, 118, 124, 129, 288, 483
BstF5I	GGATG	3 cut(s)	205, 343, 427
BstFNI	CGCG	2 cut(s)	64, 77
BstKTI	GATC	3 cut(s)	176, 287, 445
BstMAI	GTCTC	1 cut(s)	493
BstMBI	GATC	3 cut(s)	173, 284, 442
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 56, 108, 472
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	2 cut(s)	370, 395
BstSCI	CCNGG	1 cut(s)	345
BstUI	CGCG	2 cut(s)	64, 77
BstV1I	GCAGC	2 cut(s)	34, 541
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
Bsu36I	CCTNAGG	2 cut(s)	86, 483
BsuRI	GGCC	4 cut(s)	23, 83, 155, 182
BtsCI	GGATG	3 cut(s)	205, 343, 427
BtuMI	TCGCGA	1 cut(s)	64
Cac8I	GCNNGC	2 cut(s)	393, 453
Cfr13I	GGNCC	2 cut(s)	21, 82
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	564
CviAII	CATG	3 cut(s)	108, 367, 392
CviQI	GTAC	1 cut(s)	564
DdeI	CTNAG	6 cut(s)	86, 118, 124, 129, 288, 483
DpnI	GATC	3 cut(s)	175, 286, 444
DpnII	GATC	3 cut(s)	173, 284, 442
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	353
Eco81I	CCTNAGG	2 cut(s)	86, 483
Eco88I	CYCGRG	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	345
EcoT38I	GRGCYC	1 cut(s)	353
FaeI	CATG	3 cut(s)	111, 370, 395
FalI	AAGNNNNNCTT	2 cut(s)	223, 255
FaqI	GGGAC	1 cut(s)	402
FatI	CATG	3 cut(s)	107, 366, 391
FauNDI	CATATG	1 cut(s)	313
FblI	GTMKAC	1 cut(s)	308
Fnu4HI	GCNGC	2 cut(s)	48, 530
FokI	GGATG	3 cut(s)	212, 350, 414
FriOI	GRGCYC	1 cut(s)	353
Fsp4HI	GCNGC	2 cut(s)	48, 530
FspBI	CTAG	2 cut(s)	221, 278
GluI	GCNGC	2 cut(s)	48, 530
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	4 cut(s)	23, 83, 155, 182
HgaI	GACGC	1 cut(s)	100
Hin1II	CATG	3 cut(s)	111, 370, 395
HinfI	GANTC	3 cut(s)	40, 66, 244
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188III	TCNNGA	6 cut(s)	63, 251, 278, 374, 419, 440
Hpy8I	GTNNAC	1 cut(s)	309
HpyAV	CCTTC	2 cut(s)	218, 284
HpyCH4III	ACNGT	2 cut(s)	15, 520
HpyCH4V	TGCA	3 cut(s)	391, 475, 529
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 56, 108, 472
HpyF3I	CTNAG	6 cut(s)	86, 118, 124, 129, 288, 483
Hsp92II	CATG	3 cut(s)	111, 370, 395
Kzo9I	GATC	3 cut(s)	173, 284, 442
LmnI	GCTCC	2 cut(s)	55, 460
Lsp1109I	GCAGC	2 cut(s)	34, 541
LweI	GCATC	2 cut(s)	270, 436
MaeI	CTAG	2 cut(s)	221, 278
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	3 cut(s)	175, 286, 444
MboI	GATC	3 cut(s)	173, 284, 442
MboII	GAAGA	1 cut(s)	24
MflI	RGATCY	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	353
MluCI	AATT	1 cut(s)	211
MnlI	CCTC	9 cut(s)	34, 37, 40, 63, 81, 193, 247, 480, 492
MseI	TTAA	1 cut(s)	515
MspR9I	CCNGG	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	347
MvnI	CGCG	2 cut(s)	64, 77
MwoI	GCNNNNNNNGC	4 cut(s)	44, 56, 108, 472
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	3 cut(s)	173, 284, 442
NlaIII	CATG	3 cut(s)	111, 370, 395
NlaIV	GGNNCC	1 cut(s)	344
NruI	TCGCGA	1 cut(s)	64
NspI	RCATGY	2 cut(s)	370, 395
PaeI	GCATGC	1 cut(s)	395
PaeR7I	CTCGAG	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	1 cut(s)	61
PfeI	GAWTC	3 cut(s)	40, 66, 244
PflMI	CCANNNNNTGG	1 cut(s)	546
PkrI	GCNGC	2 cut(s)	49, 531
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	344
PspPI	GGNCC	2 cut(s)	21, 82
PspXI	VCTCGAGB	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	284
RruI	TCGCGA	1 cut(s)	64
RsaI	GTAC	1 cut(s)	565
RsaNI	GTAC	1 cut(s)	564
SaqAI	TTAA	1 cut(s)	515
SatI	GCNGC	2 cut(s)	48, 530
Sau3AI	GATC	3 cut(s)	173, 284, 442
Sau96I	GGNCC	2 cut(s)	21, 82
ScaI	AGTACT	1 cut(s)	565
ScrFI	CCNGG	1 cut(s)	347
SduI	GDGCHC	1 cut(s)	353
SetI	ASST	9 cut(s)	61, 104, 119, 130, 229, 472, 489, 546, 559
SfaNI	GCATC	2 cut(s)	270, 436
Sfr274I	CTCGAG	1 cut(s)	54
SlaI	CTCGAG	1 cut(s)	54
SmlI	CTYRAG	2 cut(s)	54, 184
SmoI	CTYRAG	2 cut(s)	54, 184
SphI	GCATGC	1 cut(s)	395
Sse9I	AATT	1 cut(s)	211
SsiI	CCGC	2 cut(s)	77, 159
SspMI	CTAG	2 cut(s)	221, 278
StyD4I	CCNGG	1 cut(s)	345
TaaI	ACNGT	2 cut(s)	15, 520
TaqI	TCGA	2 cut(s)	55, 69
TasI	AATT	1 cut(s)	211
TatI	WGTACW	1 cut(s)	563
TfiI	GAWTC	3 cut(s)	40, 66, 244
Tru1I	TTAA	1 cut(s)	515
Tru9I	TTAA	1 cut(s)	515
TseI	GCWGC	2 cut(s)	47, 529
TspDTI	ATGAA	2 cut(s)	216, 522
Van91I	CCANNNNNTGG	1 cut(s)	546
XbaI	TCTAGA	1 cut(s)	277
XceI	RCATGY	2 cut(s)	370, 395
XhoI	CTCGAG	1 cut(s)	54
XmiI	GTMKAC	1 cut(s)	308
XspI	CTAG	2 cut(s)	221, 278
ZrmI	AGTACT	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.