Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0009042

Physical Location & Seq

Genomic Coordinates Forward (+)

82466931 .. 82471038

Gene Structure 4108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG593300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGAGGCTAAACTGTTTAGGGCCTCCTCCTCTTCTGCGATTCTTGCTGCCCCTCGAGCTTCACGATTCAATTACGCGGTGGCCCTGAGGAAAAGTAACAACTTCCCATGCGTCAGCTCAGGCTTAGCTAAGAAAGGAAATCTGTCAGTTCAGGCCACCGCAACTTCAACCGGATCATTGGCCTCAAGGAGTAGGGTGGATGAAACTGATAATTTGACCCTAGAAGGTATAAGACACTCTTTGATTCGTCAGGAGGATAGCATCATATTTAGCCTTCTAGAGAGATCTCAGTATTGTCATAATGGGTCTACATATGACCCCAATGCTTTCCCTATGGATGGGTTCCAGGGCTCATTGGTAGAATACATTCTTCAAGAAACAGAAAAACTTCATGCTGTGGTCGGTAGATACAGCAGTCCCGATGAGCATCCTTTCTTTCCAGATCAACTGCCTGCTCCAGTTTTGCCGCCTCTGCAATACCCTCAGGTACTACATCCCAGTGCCCATTCAATTAATATAAATAGCAAAGTCTGGGAGATGTACTTCAGAGATATTCTTCCAAGACTGGTTAAGGCAGGAGATGATGGTAATAATGGATCAACTGCTGTTTGCGACACAATGTGCTTGCAGGTATGCATTTTAATTACGTATTACAGCATATTTCTAGTTCAGTTTGGAAGACCATGCAATTTTTACTCTTGTCACAGTCACCACTTAATCTGTCCCGCTCTATGTAACAAGTCCACTTGTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004106 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009636 GO:0009987 GO:0016053 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016853 GO:0016866 GO:0019438 GO:0019752 GO:0042221 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0097237 GO:0098754 GO:0098869 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

27.76

Weight (kDa)

7.08

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009042)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29200
fragaria_vesca	FvH4_6g47770 FvH4_6g47770
malus_domestica	MD09G1057700.v1.1 MD09G1058000.v1.1 MD17G1054600.v1.1
prunus_persica	Prupe.3G261500_v2.0.a1
pyrus_communis	pycom111g04790 pycom111g04830 pycom17g05220
rosa_chinensis	RchiOBHm_Chr2g0166931
rosa_laevigata	RLG00000021679
rosa_multiflora	Rmu_sc0002735.1_g000017 Rmu_sc0005344.1_g000010
rosa_roxburghii	Rroxscaffold_2G00084010 Rroxscaffold_2G00084420
rosa_rugosa	Rorug02G0526400
rosa_samantha	Rh2AG593300 Rh2BG604900 Rh2CG575700 Rh2DG616500
rosa_wichuraiana	Rw2G049400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	619
AccBSI	CCGCTC	1 cut(s)	728
AccI	GTMKAC	1 cut(s)	308
AccII	CGCG	1 cut(s)	77
AciI	CCGC	4 cut(s)	77, 159, 467, 726
AclWI	GGATC	2 cut(s)	181, 604
AcuI	CTGAAG	1 cut(s)	529
AdeI	CACNNNGTG	1 cut(s)	621
AfaI	GTAC	2 cut(s)	489, 542
AfiI	CCNNNNNNNGG	1 cut(s)	338
AgsI	TTSAA	4 cut(s)	70, 168, 374, 510
AjnI	CCWGG	1 cut(s)	345
AluBI	AGCT	3 cut(s)	59, 117, 128
AluI	AGCT	3 cut(s)	59, 117, 128
AlwI	GGATC	2 cut(s)	181, 604
Ama87I	CYCGRG	1 cut(s)	54
AoxI	GGCC	4 cut(s)	21, 81, 153, 180
ApeKI	GCWGC	1 cut(s)	47
AseI	ATTAAT	1 cut(s)	513
Asp700I	GAANNNNTTC	2 cut(s)	366, 387
AspS9I	GGNCC	2 cut(s)	21, 82
AsuHPI	GGTGA	1 cut(s)	701
AvaI	CYCGRG	1 cut(s)	54
AxyI	CCTNAGG	2 cut(s)	86, 483
BaeGI	GKGCMC	1 cut(s)	505
BaeI	ACNNNNGTAYC	2 cut(s)	400, 433
BanII	GRGCYC	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	685
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	2 cut(s)	332, 578
BciT130I	CCWGG	1 cut(s)	347
BfaI	CTAG	3 cut(s)	221, 278, 665
BfuAI	ACCTGC	1 cut(s)	619
BglII	AGATCT	1 cut(s)	284
BisI	GCNGC	2 cut(s)	48, 467
BlpI	GCTNAGC	1 cut(s)	124
BlsI	GCNGC	2 cut(s)	49, 468
Bme1390I	CCNGG	1 cut(s)	347
BmeT110I	CYCGRG	1 cut(s)	54
BmgT120I	GGNCC	2 cut(s)	21, 82
BmiI	GGNNCC	1 cut(s)	344
BmrFI	CCNGG	1 cut(s)	347
BmrI	ACTGGG	1 cut(s)	492
BmsI	GCATC	2 cut(s)	270, 436
BmuI	ACTGGG	1 cut(s)	492
BpiI	GAAGAC	1 cut(s)	685
BpmI	CTGGAG	1 cut(s)	441
Bpu10I	CCTNAGC	1 cut(s)	118
Bpu1102I	GCTNAGC	1 cut(s)	124
BpuEI	CTTGAG	1 cut(s)	169
BsaAI	YACGTR	1 cut(s)	648
BsaBI	GATNNNNATC	1 cut(s)	426
BsaJI	CCNNGG	1 cut(s)	346
BsaWI	WCCGGW	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	1 cut(s)	338
Bse1I	ACTGG	3 cut(s)	458, 498, 570
Bse21I	CCTNAGG	2 cut(s)	86, 483
Bse8I	GATNNNNATC	1 cut(s)	426
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	1 cut(s)	346
BseGI	GGATG	4 cut(s)	205, 343, 427, 493
BseJI	GATNNNNATC	1 cut(s)	426
BseLI	CCNNNNNNNGG	1 cut(s)	338
BseMII	CTCAG	4 cut(s)	77, 132, 302, 497
BseNI	ACTGG	3 cut(s)	458, 498, 570
BseRI	GAGGAG	2 cut(s)	16, 19
BseSI	GKGCMC	1 cut(s)	505
BseXI	GCAGC	1 cut(s)	34
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	4 cut(s)	23, 83, 155, 182
BsiHKCI	CYCGRG	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	171
BslFI	GGGAC	2 cut(s)	402, 708
BslI	CCNNNNNNNGG	1 cut(s)	338
BsmFI	GGGAC	2 cut(s)	402, 708
BsnI	GGCC	4 cut(s)	23, 83, 155, 182
BsoBI	CYCGRG	1 cut(s)	54
Bsp1286I	GDGCHC	2 cut(s)	353, 505
Bsp143I	GATC	4 cut(s)	173, 284, 442, 596
Bsp1720I	GCTNAGC	1 cut(s)	124
BspACI	CCGC	4 cut(s)	77, 159, 467, 726
BspANI	GGCC	4 cut(s)	23, 83, 155, 182
BspCNI	CTCAG	4 cut(s)	78, 131, 301, 496
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	1 cut(s)	344
BspMI	ACCTGC	1 cut(s)	619
BspPI	GGATC	2 cut(s)	181, 604
BsrBI	CCGCTC	1 cut(s)	728
BsrI	ACTGG	3 cut(s)	458, 498, 570
BssECI	CCNNGG	1 cut(s)	346
BssMI	GATC	4 cut(s)	173, 284, 442, 596
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	2 cut(s)	15, 707
Bst6I	CTCTTC	1 cut(s)	37
BstBAI	YACGTR	1 cut(s)	648
BstC8I	GCNNGC	2 cut(s)	453, 626
BstDEI	CTNAG	6 cut(s)	86, 118, 124, 129, 288, 483
BstF5I	GGATG	4 cut(s)	205, 343, 427, 493
BstFNI	CGCG	1 cut(s)	77
BstKTI	GATC	4 cut(s)	176, 287, 445, 599
BstMBI	GATC	4 cut(s)	173, 284, 442, 596
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 56, 472
BstNI	CCWGG	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	345
BstSLI	GKGCMC	1 cut(s)	505
BstSNI	TACGTA	1 cut(s)	648
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	34
BstV2I	GAAGAC	1 cut(s)	685
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
Bsu36I	CCTNAGG	2 cut(s)	86, 483
BsuRI	GGCC	4 cut(s)	23, 83, 155, 182
BtsCI	GGATG	4 cut(s)	205, 343, 427, 493
BtsIMutI	CAGTG	1 cut(s)	505
BveI	ACCTGC	1 cut(s)	619
Cac8I	GCNNGC	2 cut(s)	453, 626
Cfr13I	GGNCC	2 cut(s)	21, 82
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	2 cut(s)	488, 541
CviAII	CATG	3 cut(s)	108, 392, 684
CviQI	GTAC	2 cut(s)	488, 541
DdeI	CTNAG	6 cut(s)	86, 118, 124, 129, 288, 483
DpnI	GATC	4 cut(s)	175, 286, 444, 598
DpnII	GATC	4 cut(s)	173, 284, 442, 596
DraIII	CACNNNGTG	1 cut(s)	621
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
Eco105I	TACGTA	1 cut(s)	648
Eco24I	GRGCYC	1 cut(s)	353
Eco57I	CTGAAG	1 cut(s)	529
Eco81I	CCTNAGG	2 cut(s)	86, 483
Eco88I	CYCGRG	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	345
EcoT22I	ATGCAT	1 cut(s)	638
EcoT38I	GRGCYC	1 cut(s)	353
FaeI	CATG	3 cut(s)	111, 395, 687
FalI	AAGNNNNNCTT	2 cut(s)	223, 255
FaqI	GGGAC	2 cut(s)	402, 708
FatI	CATG	3 cut(s)	107, 391, 683
FauI	CCCGC	1 cut(s)	733
FauNDI	CATATG	1 cut(s)	313
FblI	GTMKAC	1 cut(s)	308
Fnu4HI	GCNGC	2 cut(s)	48, 467
FokI	GGATG	4 cut(s)	212, 350, 414, 480
FriOI	GRGCYC	1 cut(s)	353
Fsp4HI	GCNGC	2 cut(s)	48, 467
FspBI	CTAG	3 cut(s)	221, 278, 665
GluI	GCNGC	2 cut(s)	48, 467
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	4 cut(s)	23, 83, 155, 182
HapII	CCGG	1 cut(s)	171
HgaI	GACGC	1 cut(s)	100
Hin1II	CATG	3 cut(s)	111, 395, 687
HinfI	GANTC	3 cut(s)	40, 66, 244
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	1 cut(s)	701
Hpy166II	GTNNAC	2 cut(s)	309, 744
Hpy188I	TCNGA	1 cut(s)	548
Hpy188III	TCNNGA	6 cut(s)	63, 251, 278, 374, 419, 440
Hpy8I	GTNNAC	2 cut(s)	309, 744
HpyAV	CCTTC	2 cut(s)	218, 284
HpyCH4III	ACNGT	2 cut(s)	15, 707
HpyCH4IV	ACGT	1 cut(s)	647
HpyCH4V	TGCA	5 cut(s)	475, 628, 636, 687, 752
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 56, 472
HpyF3I	CTNAG	6 cut(s)	86, 118, 124, 129, 288, 483
HpySE526I	ACGT	1 cut(s)	647
Hsp92II	CATG	3 cut(s)	111, 395, 687
Kzo9I	GATC	4 cut(s)	173, 284, 442, 596
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	2 cut(s)	270, 436
MaeI	CTAG	3 cut(s)	221, 278, 665
MaeII	ACGT	1 cut(s)	647
MaeIII	GTNAC	4 cut(s)	95, 701, 707, 734
MalI	GATC	4 cut(s)	175, 286, 444, 598
MbiI	CCGCTC	1 cut(s)	728
MboI	GATC	4 cut(s)	173, 284, 442, 596
MboII	GAAGA	4 cut(s)	24, 362, 548, 690
MflI	RGATCY	1 cut(s)	284
MhlI	GDGCHC	2 cut(s)	353, 505
MluCI	AATT	5 cut(s)	70, 211, 510, 642, 688
MnlI	CCTC	9 cut(s)	34, 37, 40, 63, 81, 193, 247, 480, 492
Mph1103I	ATGCAT	1 cut(s)	638
MroXI	GAANNNNTTC	2 cut(s)	366, 387
MseI	TTAA	4 cut(s)	513, 570, 641, 716
MslI	CAYNNNNRTG	1 cut(s)	498
MspI	CCGG	1 cut(s)	171
MspR9I	CCNGG	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	347
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	3 cut(s)	44, 56, 472
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	4 cut(s)	173, 284, 442, 596
NlaIII	CATG	3 cut(s)	111, 395, 687
NlaIV	GGNNCC	1 cut(s)	344
NmuCI	GTSAC	2 cut(s)	701, 707
NsiI	ATGCAT	1 cut(s)	638
PaeR7I	CTCGAG	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	1 cut(s)	61
PdmI	GAANNNNTTC	2 cut(s)	366, 387
PfeI	GAWTC	3 cut(s)	40, 66, 244
PkrI	GCNGC	2 cut(s)	49, 468
Ppu21I	YACGTR	1 cut(s)	648
PshBI	ATTAAT	1 cut(s)	513
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	344
PspPI	GGNCC	2 cut(s)	21, 82
PspXI	VCTCGAGB	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	284
RsaI	GTAC	2 cut(s)	489, 542
RsaNI	GTAC	2 cut(s)	488, 541
RseI	CAYNNNNRTG	1 cut(s)	498
SaqAI	TTAA	4 cut(s)	513, 570, 641, 716
SatI	GCNGC	2 cut(s)	48, 467
Sau3AI	GATC	4 cut(s)	173, 284, 442, 596
Sau96I	GGNCC	2 cut(s)	21, 82
ScrFI	CCNGG	1 cut(s)	347
SduI	GDGCHC	2 cut(s)	353, 505
SetI	ASST	7 cut(s)	61, 119, 130, 229, 489, 633, 650
SfaNI	GCATC	2 cut(s)	270, 436
Sfr274I	CTCGAG	1 cut(s)	54
SlaI	CTCGAG	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	2 cut(s)	54, 184
SmoI	CTYRAG	2 cut(s)	54, 184
SnaBI	TACGTA	1 cut(s)	648
Sse9I	AATT	5 cut(s)	70, 211, 510, 642, 688
SsiI	CCGC	4 cut(s)	77, 159, 467, 726
SspMI	CTAG	3 cut(s)	221, 278, 665
StyD4I	CCNGG	1 cut(s)	345
TaaI	ACNGT	2 cut(s)	15, 707
TaiI	ACGT	1 cut(s)	650
TaqI	TCGA	1 cut(s)	55
TasI	AATT	5 cut(s)	70, 211, 510, 642, 688
TatI	WGTACW	1 cut(s)	540
TauI	GCSGC	1 cut(s)	469
TfiI	GAWTC	3 cut(s)	40, 66, 244
Tru1I	TTAA	4 cut(s)	513, 570, 641, 716
Tru9I	TTAA	4 cut(s)	513, 570, 641, 716
TscAI	CASTG	1 cut(s)	505
TseFI	GTSAC	2 cut(s)	701, 707
TseI	GCWGC	1 cut(s)	47
Tsp45I	GTSAC	2 cut(s)	701, 707
TspDTI	ATGAA	2 cut(s)	216, 380
TspRI	CASTG	1 cut(s)	505
VspI	ATTAAT	1 cut(s)	513
XbaI	TCTAGA	1 cut(s)	277
XhoI	CTCGAG	1 cut(s)	54
XmiI	GTMKAC	1 cut(s)	308
XmnI	GAANNNNTTC	2 cut(s)	366, 387
XspI	CTAG	3 cut(s)	221, 278, 665
Zsp2I	ATGCAT	1 cut(s)	638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.