AT3G29240

Uncharacterized ACR, COG1678

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012172
Physical Location & Seq
Forward (+)
11191263 .. 11193044
1782 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G29240.1

Sequence Viewer

Length: 954 bp
ATGGATGCTTGTTTTCTTACCTCAAGATCAATCTCTGGTGTTAAAGAGCTTGTCCCGTTCATCAAAGCGAGAATCTTTACTTGCCCCAAGAGAAATTCTGGCCAATTTGTTACCAGGAAGGTTGCTTCTCCGATCTCTGTAAATTGTTCTCTTTCGGATTCATGGAAGCCACTGGAAGATGATGCTGATCTCTTCAAGGATTGTGTCAACAATTCTACATCAGATGCTGATTGGAGGGAGTTCAGGGCAAGGCTTGTTGCAGGGGAACAAGCTGCAACGTCCGAGAAGGATCAGCCCTCGTGGTCTAACCCGGACATGGTGGTGGACTATCAGCCATCATCGTCCTCACTGATCACAATTGGAAGCAAATGGGCACACAAGATCCATGAGCCAGAGACAGGCTGCCTCCTAATCGCCACAGAGAAGCTAGACGGTGTCCACATCTTCGAAAAGACGGTGATCCTCCTCCTCTCTGTTGGACCCTCAGGTCCTATAGGAGTCATCCTAAACCGTCCATCTCTGATGTCTATTAAGGAGACCAAGTCAACGATATTAGACATGGCAGGAACGTTTTCAGACAAAAGACTCTTCTTTGGTGGACCTTTGGAAGAAGGGTTGTTCTTGGTGAGTCCAAGGAGTGGTGGAGACAACGAGGTTGGTAAGAGCGGAGTATTCAGACAAGTGATGAAAGGATTGTACTATGGAACGAGAGAGAGTGTAGGATTGGCTGCAGAGATGGTGAAGAGGAATTTGGTTGGAAGAAGTGAGCTTAGATTCTTTGATGGGTATTGTGGTTGGGAAAAAGAGCAGTTAAAAGCAGAGATCTTGGGAGGGTATTGGACTGTTGCTGCTTGTAGCTCCACTGTTGTTGAGCTTGGTTCAGCTGTCCAAAGTCATGGTCTTTGGGATGAGGTTCTTGGGCTTATTGGGCCTCAAACGGGCTCTGTTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF179

Protein Analysis

317

Amino Acids

34.55

Weight (kDa)

5.71

Isoelectric Point (pI)

43.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF179 PF02622 148 - 310 2.6e-25 AlgH-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29240 AT3G29240
fragaria_vesca FvH4_6g47750
malus_domestica MD09G1058900.v1.1 MD17G1054800.v1.1
prunus_persica Prupe.3G261300_v2.0.a1
pyrus_communis pycom17g05230
rosa_chinensis RchiOBHm_Chr2g0166901
rosa_laevigata RLG00000021677
rosa_multiflora Rmu_sc0002735.1_g000015 Rmu_sc0005344.1_g000008
rosa_roxburghii Rroxscaffold_2G00084030 Rroxscaffold_2G00084430
rosa_rugosa Rorug02G0526200
rosa_samantha Rh2AG593200 Rh2BG604700 Rh2CG575400 Rh2DG616200
rosa_wichuraiana Rw2G049380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 486
AccB7I CCANNNNNTGG 1 cut(s) 638
AccBSI CCGCTC 1 cut(s) 666
AciI CCGC 1 cut(s) 666
AclI AACGTT 1 cut(s) 569
AclWI GGATC 3 cut(s) 297, 376, 454
AcoI YGGCCR 1 cut(s) 100
AcsI RAATTY 2 cut(s) 94, 748
AfaI GTAC 1 cut(s) 698
AfiI CCNNNNNNNGG 4 cut(s) 316, 398, 638, 938
AgsI TTSAA 1 cut(s) 196
AjnI CCWGG 1 cut(s) 113
AjuI GAANNNNNNNTTGG 2 cut(s) 734, 766
AluBI AGCT 7 cut(s) 49, 272, 427, 769, 858, 874, 884
AluI AGCT 7 cut(s) 49, 272, 427, 769, 858, 874, 884
Alw26I GTCTC 3 cut(s) 389, 530, 639
AlwI GGATC 3 cut(s) 297, 376, 454
AlwNI CAGNNNCTG 1 cut(s) 227
AoxI GGCC 2 cut(s) 100, 929
ApeKI GCWGC 4 cut(s) 272, 402, 728, 848
ApoI RAATTY 2 cut(s) 94, 748
ArsI GACNNNNNNTTYG 2 cut(s) 883, 915
Asp700I GAANNNNTTC 1 cut(s) 571
AspS9I GGNCC 4 cut(s) 479, 488, 599, 929
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 3 cut(s) 469, 637, 751
AsuII TTCGAA 1 cut(s) 447
AvaII GGWCC 3 cut(s) 479, 488, 599
AxyI CCTNAGG 1 cut(s) 484
BaeGI GKGCMC 1 cut(s) 376
BalI TGGCCA 1 cut(s) 102
BanII GRGCYC 1 cut(s) 944
BauI CACGAG 1 cut(s) 298
BbvI GCAGC 4 cut(s) 259, 389, 715, 835
BccI CCATC 4 cut(s) 343, 523, 730, 776
BciT130I CCWGG 1 cut(s) 115
BclI TGATCA 1 cut(s) 351
BcnI CCSGG 1 cut(s) 311
BcoDI GTCTC 3 cut(s) 389, 530, 639
BfaI CTAG 1 cut(s) 428
BfmI CTRYAG 2 cut(s) 492, 729
BglII AGATCT 1 cut(s) 822
BisI GCNGC 4 cut(s) 273, 403, 729, 849
BlsI GCNGC 4 cut(s) 274, 404, 730, 850
Bme1390I CCNGG 2 cut(s) 115, 311
Bme18I GGWCC 3 cut(s) 479, 488, 599
BmgT120I GGNCC 4 cut(s) 479, 488, 599, 929
BmiI GGNNCC 1 cut(s) 481
BmrFI CCNGG 2 cut(s) 115, 311
BmsI GCATC 2 cut(s) 172, 214
Bpu14I TTCGAA 1 cut(s) 447
BpuEI CTTGAG 1 cut(s) 7
BpuMI CCSGG 1 cut(s) 311
BsaBI GATNNNNATC 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 530
BsaJI CCNNGG 1 cut(s) 632
BsaXI ACNNNNNCTCC 2 cut(s) 527, 557
Bsc4I CCNNNNNNNGG 4 cut(s) 316, 398, 638, 938
Bse1I ACTGG 1 cut(s) 177
Bse21I CCTNAGG 1 cut(s) 484
Bse8I GATNNNNATC 1 cut(s) 186
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 1 cut(s) 632
BseGI GGATG 3 cut(s) 10, 501, 913
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 4 cut(s) 316, 398, 638, 938
BseMII CTCAG 1 cut(s) 498
BseNI ACTGG 1 cut(s) 177
BseRI GAGGAG 2 cut(s) 455, 458
BseSI GKGCMC 1 cut(s) 376
BseXI GCAGC 4 cut(s) 259, 389, 715, 835
BshFI GGCC 2 cut(s) 102, 931
BsiSI CCGG 1 cut(s) 311
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 4 cut(s) 316, 398, 638, 938
BsmAI GTCTC 3 cut(s) 389, 530, 639
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 2 cut(s) 102, 931
Bso31I GGTCTC 1 cut(s) 530
Bsp119I TTCGAA 1 cut(s) 447
Bsp1286I GDGCHC 2 cut(s) 376, 944
Bsp143I GATC 8 cut(s) 26, 132, 187, 289, 351, 381, 459, 822
BspACI CCGC 1 cut(s) 666
BspANI GGCC 2 cut(s) 102, 931
BspCNI CTCAG 1 cut(s) 497
BspLI GGNNCC 1 cut(s) 481
BspMAI CTGCAG 1 cut(s) 733
BspPI GGATC 3 cut(s) 297, 376, 454
BspT104I TTCGAA 1 cut(s) 447
BspTNI GGTCTC 1 cut(s) 530
BsrBI CCGCTC 1 cut(s) 666
BsrI ACTGG 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 632
BssMI GATC 8 cut(s) 26, 132, 187, 289, 351, 381, 459, 822
BssSI CACGAG 1 cut(s) 298
BssT1I CCWWGG 1 cut(s) 632
Bst2BI CACGAG 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 115
Bst4CI ACNGT 5 cut(s) 434, 457, 512, 844, 865
Bst6I CTCTTC 3 cut(s) 197, 593, 737
BstBI TTCGAA 1 cut(s) 447
BstDEI CTNAG 2 cut(s) 484, 770
BstF5I GGATG 3 cut(s) 10, 501, 913
BstKTI GATC 8 cut(s) 29, 135, 190, 292, 354, 384, 462, 825
BstMAI GTCTC 3 cut(s) 389, 530, 639
BstMBI GATC 8 cut(s) 26, 132, 187, 289, 351, 381, 459, 822
BstMWI GCNNNNNNNGC 1 cut(s) 928
BstNI CCWGG 1 cut(s) 115
BstSCI CCNGG 2 cut(s) 113, 309
BstSFI CTRYAG 2 cut(s) 492, 729
BstSLI GKGCMC 1 cut(s) 376
BstV1I GCAGC 4 cut(s) 259, 389, 715, 835
BstX2I RGATCY 2 cut(s) 381, 822
BstXI CCANNNNNNTGG 1 cut(s) 896
BstYI RGATCY 2 cut(s) 381, 822
Bsu36I CCTNAGG 1 cut(s) 484
BsuRI GGCC 2 cut(s) 102, 931
BtsCI GGATG 3 cut(s) 10, 501, 913
BtsIMutI CAGTG 3 cut(s) 170, 347, 861
CaiI CAGNNNCTG 1 cut(s) 227
Cfr13I GGNCC 4 cut(s) 479, 488, 599, 929
Csp6I GTAC 1 cut(s) 697
CspCI CAANNNNNGTGG 2 cut(s) 850, 885
CviAII CATG 5 cut(s) 162, 316, 386, 559, 896
CviQI GTAC 1 cut(s) 697
DdeI CTNAG 2 cut(s) 484, 770
DpnI GATC 8 cut(s) 28, 134, 189, 291, 353, 383, 461, 824
DpnII GATC 8 cut(s) 26, 132, 187, 289, 351, 381, 459, 822
DrdI GACNNNNNNGTC 1 cut(s) 486
DseDI GACNNNNNNGTC 1 cut(s) 486
EaeI YGGCCR 1 cut(s) 100
Eam1104I CTCTTC 3 cut(s) 197, 593, 737
EarI CTCTTC 3 cut(s) 197, 593, 737
Eco130I CCWWGG 1 cut(s) 632
Eco24I GRGCYC 1 cut(s) 944
Eco31I GGTCTC 1 cut(s) 530
Eco47I GGWCC 3 cut(s) 479, 488, 599
Eco81I CCTNAGG 1 cut(s) 484
EcoO109I RGGNCCY 1 cut(s) 488
EcoRII CCWGG 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 632
EcoT38I GRGCYC 1 cut(s) 944
ErhI CCWWGG 1 cut(s) 632
FaeI CATG 5 cut(s) 165, 319, 389, 562, 899
FaiI YATR 7 cut(s) 163, 317, 387, 494, 560, 702, 897
FaqI GGGAC 1 cut(s) 38
FatI CATG 5 cut(s) 161, 315, 385, 558, 895
FbaI TGATCA 1 cut(s) 351
Fnu4HI GCNGC 4 cut(s) 273, 403, 729, 849
FokI GGATG 3 cut(s) 17, 488, 920
FriOI GRGCYC 1 cut(s) 944
Fsp4HI GCNGC 4 cut(s) 273, 403, 729, 849
FspBI CTAG 1 cut(s) 428
GluI GCNGC 4 cut(s) 273, 403, 729, 849
HaeIII GGCC 2 cut(s) 102, 931
HapII CCGG 1 cut(s) 311
Hin1II CATG 5 cut(s) 165, 319, 389, 562, 899
HincII GTYRAC 2 cut(s) 208, 546
HindII GTYRAC 2 cut(s) 208, 546
HinfI GANTC 6 cut(s) 72, 158, 498, 585, 628, 774
HpaII CCGG 1 cut(s) 311
HphI GGTGA 3 cut(s) 469, 637, 751
Hpy166II GTNNAC 5 cut(s) 208, 325, 439, 546, 599
Hpy188I TCNGA 7 cut(s) 132, 157, 223, 283, 522, 577, 677
Hpy188III TCNNGA 1 cut(s) 24
Hpy8I GTNNAC 5 cut(s) 208, 325, 439, 546, 599
HpyAV CCTTC 3 cut(s) 112, 280, 605
HpyCH4III ACNGT 5 cut(s) 434, 457, 512, 844, 865
HpyCH4IV ACGT 2 cut(s) 278, 569
HpyCH4V TGCA 3 cut(s) 260, 275, 731
HpyF10VI GCNNNNNNNGC 1 cut(s) 928
HpyF3I CTNAG 2 cut(s) 484, 770
HpySE526I ACGT 2 cut(s) 278, 569
Hsp92II CATG 5 cut(s) 165, 319, 389, 562, 899
Ksp22I TGATCA 1 cut(s) 351
Kzo9I GATC 8 cut(s) 26, 132, 187, 289, 351, 381, 459, 822
LmnI GCTCC 1 cut(s) 863
Lsp1109I GCAGC 4 cut(s) 259, 389, 715, 835
LweI GCATC 2 cut(s) 172, 214
MaeI CTAG 1 cut(s) 428
MaeII ACGT 2 cut(s) 278, 569
MaeIII GTNAC 1 cut(s) 109
MalI GATC 8 cut(s) 28, 134, 189, 291, 353, 383, 461, 824
MbiI CCGCTC 1 cut(s) 666
MboI GATC 8 cut(s) 26, 132, 187, 289, 351, 381, 459, 822
MboII GAAGA 7 cut(s) 184, 188, 436, 580, 620, 754, 771
MfeI CAATTG 1 cut(s) 357
MflI RGATCY 2 cut(s) 381, 822
MhlI GDGCHC 2 cut(s) 376, 944
MlsI TGGCCA 1 cut(s) 102
MluCI AATT 6 cut(s) 94, 104, 142, 211, 357, 748
MluNI TGGCCA 1 cut(s) 102
MlyI GAGTC 3 cut(s) 507, 579, 637
MmeI TCCRAC 2 cut(s) 457, 736
Mox20I TGGCCA 1 cut(s) 102
MroXI GAANNNNTTC 1 cut(s) 571
MscI TGGCCA 1 cut(s) 102
MseI TTAA 3 cut(s) 42, 531, 812
MslI CAYNNNNRTG 1 cut(s) 320
Msp20I TGGCCA 1 cut(s) 102
MspA1I CMGCKG 1 cut(s) 884
MspI CCGG 1 cut(s) 311
MspR9I CCNGG 2 cut(s) 115, 311
MunI CAATTG 1 cut(s) 357
MvaI CCWGG 1 cut(s) 115
MwoI GCNNNNNNNGC 1 cut(s) 928
NciI CCSGG 1 cut(s) 311
NdeII GATC 8 cut(s) 26, 132, 187, 289, 351, 381, 459, 822
NlaIII CATG 5 cut(s) 165, 319, 389, 562, 899
NlaIV GGNNCC 1 cut(s) 481
NspV TTCGAA 1 cut(s) 447
PdmI GAANNNNTTC 1 cut(s) 571
PfeI GAWTC 3 cut(s) 72, 158, 774
PflFI GACNNNGTC 2 cut(s) 434, 541
PflMI CCANNNNNTGG 1 cut(s) 638
PkrI GCNGC 4 cut(s) 274, 404, 730, 850
PleI GAGTC 3 cut(s) 506, 579, 636
PpsI GAGTC 3 cut(s) 506, 579, 636
PpuMI RGGWCCY 1 cut(s) 488
Psp1406I AACGTT 1 cut(s) 569
Psp5II RGGWCCY 1 cut(s) 488
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 481
PspPI GGNCC 4 cut(s) 479, 488, 599, 929
PspPPI RGGWCCY 1 cut(s) 488
PstI CTGCAG 1 cut(s) 733
PstNI CAGNNNCTG 1 cut(s) 227
PsuI RGATCY 2 cut(s) 381, 822
PsyI GACNNNGTC 2 cut(s) 434, 541
PvuII CAGCTG 1 cut(s) 884
RsaI GTAC 1 cut(s) 698
RsaNI GTAC 1 cut(s) 697
RseI CAYNNNNRTG 1 cut(s) 320
SaqAI TTAA 3 cut(s) 42, 531, 812
SatI GCNGC 4 cut(s) 273, 403, 729, 849
Sau3AI GATC 8 cut(s) 26, 132, 187, 289, 351, 381, 459, 822
Sau96I GGNCC 4 cut(s) 479, 488, 599, 929
SchI GAGTC 3 cut(s) 507, 579, 637
ScrFI CCNGG 2 cut(s) 115, 311
SduI GDGCHC 2 cut(s) 376, 944
SfaNI GCATC 2 cut(s) 172, 214
SfcI CTRYAG 2 cut(s) 492, 729
SfuI TTCGAA 1 cut(s) 447
SinI GGWCC 3 cut(s) 479, 488, 599
SmiMI CAYNNNNRTG 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
Sse9I AATT 6 cut(s) 94, 104, 142, 211, 357, 748
SsiI CCGC 1 cut(s) 666
SspMI CTAG 1 cut(s) 428
StyD4I CCNGG 2 cut(s) 113, 309
StyI CCWWGG 1 cut(s) 632
TaaI ACNGT 5 cut(s) 434, 457, 512, 844, 865
TaiI ACGT 2 cut(s) 281, 572
TaqI TCGA 1 cut(s) 447
TasI AATT 6 cut(s) 94, 104, 142, 211, 357, 748
TatI WGTACW 1 cut(s) 696
TfiI GAWTC 3 cut(s) 72, 158, 774
Tru1I TTAA 3 cut(s) 42, 531, 812
Tru9I TTAA 3 cut(s) 42, 531, 812
TscAI CASTG 3 cut(s) 177, 354, 868
TseI GCWGC 4 cut(s) 272, 402, 728, 848
TspDTI ATGAA 3 cut(s) 49, 150, 701
TspRI CASTG 3 cut(s) 177, 354, 868
Tth111I GACNNNGTC 2 cut(s) 434, 541
Van91I CCANNNNNTGG 1 cut(s) 638
VpaK11BI GGWCC 3 cut(s) 479, 488, 599
XapI RAATTY 2 cut(s) 94, 748
XmnI GAANNNNTTC 1 cut(s) 571
XspI CTAG 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.