FvH4_6g47750

Uncharacterized ACR, COG1678

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012172
Physical Location & Seq
Reverse (-)
36130199 .. 36131767
1569 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g47750.t1

Sequence Viewer

Length: 1038 bp
ATGGGATTAGATCAGACTCAACCTTGTGGTGTACATTGGCCTAACTTGCTGTATATATCAGTATCATCTTGCCCTTCATTCCTTGCCATCTTTGAACCTTCGATCACCTATCAAAACTCAAAAGAGGAAAGAAACTTGAGCAGCAAAGAACCAGTCATGGAAGCTTGTTTCCTTGCCTCAAATTCCTTCACCAAAACCTTGGAGTCTGCGACTTTCCCCAAGAGAACTCCTACTCAATTTCAAAACAAAAGAGTCGGCATTCCATGTTCAACCACATGTTGCCGGATGGAGTCATCTTCACCGTCAGATGATGACTACAAACCTTCCATTAATACCGATTGGCGATCATTCAGAGCAAAACTGGTAGCTGCAGAAAAAGCATCACTGCCCAAATTGCCTACTTCCATAGTTGGTGATCTAGACACTGTTGTAGATCAACCTCAGCCCATCACTGTTGGTGATAAGTGGGCTCACACGATCCACGAGCCCGAAAGAGGCTGCCTACTCCTTGCCACCGAAAAGCTTGACGGGGTCCATATTTTCGAACGGACGGTTATTTTGGTGTTGTCTACTGGGCCTATGGGCCCATCAGGCATCATACTAAACCGGCCCTCTCTAATGTCGATTAAGGAAACGGGATCGACGGTCCTAGATGTCGCCGGGACGTTCTCTGACAGGCCGTTGTTCTTCGGTGGGCCTCTGGATGAAGGTCTGTTCTTGGTGAGGCCCAAGAAGGGTGATGATAAAGTTGGGGGGAGTGGTGTTTTTGATGAGGTGGTGAAGGGATTGTATTATGGGACAAAGGAAAGTGTGGGTTGTGCAGCTGAAATGGTCAAGAGGAATATGGTTGGACTTGGGGACTTTAGGTTTTTTGATGGGTATTGTGGGTGGGAAAAGGAGCAATTGAACAATGAGATCAGAGCTGGTTATTGGACTGTAGCAGCTTGTAGCCCAAGTGTAATCGAGTTGAGTAATGTGGGAAGTGCTGGGCTTTGGGAGAAGATTCTTGGGCTTATGGGCCGTAGAAAGGTTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF179

Protein Analysis

346

Amino Acids

37.82

Weight (kDa)

6.16

Isoelectric Point (pI)

40.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF179 PF02622 180 - 340 1.8e-25 AlgH-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29240 AT3G29240
fragaria_vesca FvH4_6g47750
malus_domestica MD09G1058900.v1.1 MD17G1054800.v1.1
prunus_persica Prupe.3G261300_v2.0.a1
pyrus_communis pycom17g05230
rosa_chinensis RchiOBHm_Chr2g0166901
rosa_laevigata RLG00000021677
rosa_multiflora Rmu_sc0002735.1_g000015 Rmu_sc0005344.1_g000008
rosa_roxburghii Rroxscaffold_2G00084030 Rroxscaffold_2G00084430
rosa_rugosa Rorug02G0526200
rosa_samantha Rh2AG593200 Rh2BG604700 Rh2CG575400 Rh2DG616200
rosa_wichuraiana Rw2G049380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 569
AclWI GGATC 2 cut(s) 472, 646
AcsI RAATTY 1 cut(s) 181
AfaI GTAC 1 cut(s) 33
AfiI CCNNNNNNNGG 3 cut(s) 494, 734, 1027
AflIII ACRYGT 1 cut(s) 275
AgsI TTSAA 4 cut(s) 95, 242, 270, 907
AluBI AGCT 6 cut(s) 164, 368, 523, 824, 923, 944
AluI AGCT 6 cut(s) 164, 368, 523, 824, 923, 944
AlwI GGATC 2 cut(s) 472, 646
AoxI GGCC 8 cut(s) 38, 575, 583, 608, 677, 695, 725, 1018
ApaI GGGCCC 1 cut(s) 587
ApeKI GCWGC 5 cut(s) 141, 368, 498, 821, 941
ApoI RAATTY 1 cut(s) 181
ArsI GACNNNNNNTTYG 4 cut(s) 138, 170, 541, 573
AseI ATTAAT 1 cut(s) 330
AspS9I GGNCC 9 cut(s) 532, 575, 583, 584, 609, 646, 695, 726, 1018
AsuC2I CCSGG 1 cut(s) 661
AsuHPI GGTGA 8 cut(s) 97, 181, 291, 425, 470, 733, 749, 790
AsuII TTCGAA 1 cut(s) 543
AvaII GGWCC 2 cut(s) 532, 646
BaeGI GKGCMC 1 cut(s) 587
BanII GRGCYC 3 cut(s) 472, 489, 587
BauI CACGAG 1 cut(s) 482
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 5 cut(s) 153, 355, 485, 833, 953
BccI CCATC 5 cut(s) 95, 280, 455, 595, 869
BceAI ACGGC 2 cut(s) 664, 1005
BcnI CCSGG 1 cut(s) 661
BfaI CTAG 2 cut(s) 419, 650
BfmI CTRYAG 2 cut(s) 369, 936
BglI GCCNNNNNGGC 1 cut(s) 591
BisI GCNGC 5 cut(s) 142, 369, 499, 822, 942
BlsI GCNGC 5 cut(s) 143, 370, 500, 823, 943
Bme1390I CCNGG 1 cut(s) 661
Bme18I GGWCC 2 cut(s) 532, 646
BmgT120I GGNCC 9 cut(s) 532, 575, 583, 584, 609, 646, 695, 726, 1018
BmiI GGNNCC 2 cut(s) 533, 585
BmrFI CCNGG 1 cut(s) 661
BmrI ACTGGG 1 cut(s) 582
BmsI GCATC 2 cut(s) 389, 603
BmuI ACTGGG 1 cut(s) 582
Bpu10I CCTNAGC 1 cut(s) 441
Bpu14I TTCGAA 1 cut(s) 543
BpuEI CTTGAG 1 cut(s) 157
BpuMI CCSGG 1 cut(s) 661
BsaJI CCNNGG 1 cut(s) 198
Bsc4I CCNNNNNNNGG 3 cut(s) 494, 734, 1027
Bse118I RCCGGY 1 cut(s) 606
Bse1I ACTGG 3 cut(s) 152, 366, 577
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 2 cut(s) 291, 709
BseLI CCNNNNNNNGG 3 cut(s) 494, 734, 1027
BseMII CTCAG 1 cut(s) 455
BseNI ACTGG 3 cut(s) 152, 366, 577
BseSI GKGCMC 1 cut(s) 587
BseXI GCAGC 5 cut(s) 153, 355, 485, 833, 953
BseYI CCCAGC 1 cut(s) 986
BsgI GTGCAG 1 cut(s) 840
BshFI GGCC 8 cut(s) 40, 577, 585, 610, 679, 697, 727, 1020
BsiSI CCGG 3 cut(s) 283, 607, 660
BslFI GGGAC 3 cut(s) 676, 811, 872
BslI CCNNNNNNNGG 3 cut(s) 494, 734, 1027
BsmFI GGGAC 3 cut(s) 676, 811, 872
BsmI GAATGC 1 cut(s) 258
BsnI GGCC 8 cut(s) 40, 577, 585, 610, 679, 697, 727, 1020
Bsp119I TTCGAA 1 cut(s) 543
Bsp120I GGGCCC 1 cut(s) 583
Bsp1286I GDGCHC 3 cut(s) 472, 489, 587
Bsp1407I TGTACA 1 cut(s) 31
Bsp143I GATC 8 cut(s) 10, 102, 344, 415, 433, 477, 638, 915
BspANI GGCC 8 cut(s) 40, 577, 585, 610, 679, 697, 727, 1020
BspCNI CTCAG 1 cut(s) 454
BspLI GGNNCC 2 cut(s) 533, 585
BspMAI CTGCAG 1 cut(s) 373
BspPI GGATC 2 cut(s) 472, 646
BspT104I TTCGAA 1 cut(s) 543
BsrFI RCCGGY 1 cut(s) 606
BsrGI TGTACA 1 cut(s) 31
BsrI ACTGG 3 cut(s) 152, 366, 577
BssAI RCCGGY 1 cut(s) 606
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 8 cut(s) 10, 102, 344, 415, 433, 477, 638, 915
BssSI CACGAG 1 cut(s) 482
BssT1I CCWWGG 1 cut(s) 198
Bst2BI CACGAG 1 cut(s) 482
Bst4CI ACNGT 6 cut(s) 303, 427, 454, 553, 646, 937
BstAUI TGTACA 1 cut(s) 31
BstBI TTCGAA 1 cut(s) 543
BstDEI CTNAG 1 cut(s) 441
BstF5I GGATG 2 cut(s) 291, 709
BstKTI GATC 8 cut(s) 13, 105, 347, 418, 436, 480, 641, 918
BstMBI GATC 8 cut(s) 10, 102, 344, 415, 433, 477, 638, 915
BstMWI GCNNNNNNNGC 4 cut(s) 46, 377, 394, 591
BstNSI RCATGY 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 659
BstSFI CTRYAG 2 cut(s) 369, 936
BstSLI GKGCMC 1 cut(s) 587
BstV1I GCAGC 5 cut(s) 153, 355, 485, 833, 953
BstXI CCANNNNNNTGG 1 cut(s) 199
BsuRI GGCC 8 cut(s) 40, 577, 585, 610, 679, 697, 727, 1020
BtsCI GGATG 2 cut(s) 291, 709
BtsI GCAGTG 1 cut(s) 383
BtsIMutI CAGTG 3 cut(s) 383, 423, 450
Cfr10I RCCGGY 1 cut(s) 606
Cfr13I GGNCC 9 cut(s) 532, 575, 583, 584, 609, 646, 695, 726, 1018
Csp6I GTAC 1 cut(s) 32
CviAII CATG 3 cut(s) 157, 264, 276
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 1 cut(s) 441
DpnI GATC 8 cut(s) 12, 104, 346, 417, 435, 479, 640, 917
DpnII GATC 8 cut(s) 10, 102, 344, 415, 433, 477, 638, 915
Eco130I CCWWGG 1 cut(s) 198
Eco24I GRGCYC 3 cut(s) 472, 489, 587
Eco47I GGWCC 2 cut(s) 532, 646
EcoT14I CCWWGG 1 cut(s) 198
EcoT38I GRGCYC 3 cut(s) 472, 489, 587
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 3 cut(s) 160, 267, 279
FaqI GGGAC 3 cut(s) 676, 811, 872
FatI CATG 3 cut(s) 156, 263, 275
FblI GTMKAC 1 cut(s) 569
Fnu4HI GCNGC 5 cut(s) 142, 369, 499, 822, 942
FokI GGATG 2 cut(s) 298, 716
FriOI GRGCYC 3 cut(s) 472, 489, 587
Fsp4HI GCNGC 5 cut(s) 142, 369, 499, 822, 942
FspBI CTAG 2 cut(s) 419, 650
GluI GCNGC 5 cut(s) 142, 369, 499, 822, 942
GsaI CCCAGC 1 cut(s) 990
HaeIII GGCC 8 cut(s) 40, 577, 585, 610, 679, 697, 727, 1020
HapII CCGG 3 cut(s) 283, 607, 660
Hin1II CATG 3 cut(s) 160, 267, 279
HindIII AAGCTT 2 cut(s) 162, 521
HinfI GANTC 5 cut(s) 16, 203, 252, 290, 1003
HpaII CCGG 3 cut(s) 283, 607, 660
HphI GGTGA 8 cut(s) 97, 181, 291, 425, 470, 733, 749, 790
Hpy166II GTNNAC 2 cut(s) 32, 570
Hpy188I TCNGA 5 cut(s) 15, 307, 353, 673, 920
Hpy188III TCNNGA 3 cut(s) 419, 701, 835
Hpy8I GTNNAC 2 cut(s) 32, 570
Hpy99I CGWCG 1 cut(s) 646
HpyAV CCTTC 7 cut(s) 84, 108, 196, 333, 701, 727, 775
HpyCH4III ACNGT 6 cut(s) 303, 427, 454, 553, 646, 937
HpyCH4IV ACGT 1 cut(s) 665
HpyCH4V TGCA 2 cut(s) 371, 821
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 377, 394, 591
HpyF3I CTNAG 1 cut(s) 441
HpySE526I ACGT 1 cut(s) 665
Hsp92II CATG 3 cut(s) 160, 267, 279
Kzo9I GATC 8 cut(s) 10, 102, 344, 415, 433, 477, 638, 915
LmnI GCTCC 1 cut(s) 898
Lsp1109I GCAGC 5 cut(s) 153, 355, 485, 833, 953
LweI GCATC 2 cut(s) 389, 603
MaeI CTAG 2 cut(s) 419, 650
MaeII ACGT 1 cut(s) 665
MalI GATC 8 cut(s) 12, 104, 346, 417, 435, 479, 640, 917
MboI GATC 8 cut(s) 10, 102, 344, 415, 433, 477, 638, 915
MboII GAAGA 3 cut(s) 288, 679, 1012
MfeI CAATTG 1 cut(s) 902
MhlI GDGCHC 3 cut(s) 472, 489, 587
MluCI AATT 4 cut(s) 181, 236, 392, 902
MlyI GAGTC 4 cut(s) 10, 212, 261, 299
MmeI TCCRAC 1 cut(s) 829
MnlI CCTC 9 cut(s) 118, 187, 450, 488, 622, 708, 717, 766, 831
MseI TTAA 2 cut(s) 330, 627
MspA1I CMGCKG 1 cut(s) 824
MspI CCGG 3 cut(s) 283, 607, 660
MspR9I CCNGG 1 cut(s) 661
MunI CAATTG 1 cut(s) 902
Mva1269I GAATGC 1 cut(s) 258
MwoI GCNNNNNNNGC 4 cut(s) 46, 377, 394, 591
NciI CCSGG 1 cut(s) 661
NdeII GATC 8 cut(s) 10, 102, 344, 415, 433, 477, 638, 915
NlaIII CATG 3 cut(s) 160, 267, 279
NlaIV GGNNCC 2 cut(s) 533, 585
NspI RCATGY 1 cut(s) 279
NspV TTCGAA 1 cut(s) 543
PciI ACATGT 1 cut(s) 275
PctI GAATGC 1 cut(s) 258
PfeI GAWTC 1 cut(s) 1003
PflFI GACNNNGTC 1 cut(s) 530
PkrI GCNGC 5 cut(s) 143, 370, 500, 823, 943
PleI GAGTC 4 cut(s) 10, 211, 260, 298
PpsI GAGTC 4 cut(s) 10, 211, 260, 298
PscI ACATGT 1 cut(s) 275
PshBI ATTAAT 1 cut(s) 330
PspFI CCCAGC 1 cut(s) 986
PspN4I GGNNCC 2 cut(s) 533, 585
PspOMI GGGCCC 1 cut(s) 583
PspPI GGNCC 9 cut(s) 532, 575, 583, 584, 609, 646, 695, 726, 1018
PstI CTGCAG 1 cut(s) 373
PsyI GACNNNGTC 1 cut(s) 530
PvuII CAGCTG 1 cut(s) 824
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SaqAI TTAA 2 cut(s) 330, 627
SatI GCNGC 5 cut(s) 142, 369, 499, 822, 942
Sau3AI GATC 8 cut(s) 10, 102, 344, 415, 433, 477, 638, 915
Sau96I GGNCC 9 cut(s) 532, 575, 583, 584, 609, 646, 695, 726, 1018
SchI GAGTC 4 cut(s) 10, 212, 261, 299
ScrFI CCNGG 1 cut(s) 661
SduI GDGCHC 3 cut(s) 472, 489, 587
SfaNI GCATC 2 cut(s) 389, 603
SfcI CTRYAG 2 cut(s) 369, 936
SfuI TTCGAA 1 cut(s) 543
SinI GGWCC 2 cut(s) 532, 646
SmlI CTYRAG 1 cut(s) 136
SmoI CTYRAG 1 cut(s) 136
Sse9I AATT 4 cut(s) 181, 236, 392, 902
SspMI CTAG 2 cut(s) 419, 650
StyD4I CCNGG 1 cut(s) 659
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 6 cut(s) 303, 427, 454, 553, 646, 937
TaiI ACGT 1 cut(s) 668
TaqI TCGA 5 cut(s) 101, 543, 623, 641, 963
TasI AATT 4 cut(s) 181, 236, 392, 902
TatI WGTACW 1 cut(s) 31
TfiI GAWTC 1 cut(s) 1003
Tru1I TTAA 2 cut(s) 330, 627
Tru9I TTAA 2 cut(s) 330, 627
TscAI CASTG 3 cut(s) 390, 430, 457
TseI GCWGC 5 cut(s) 141, 368, 498, 821, 941
TspDTI ATGAA 2 cut(s) 66, 720
TspGWI ACGGA 1 cut(s) 562
TspRI CASTG 3 cut(s) 390, 430, 457
Tth111I GACNNNGTC 1 cut(s) 530
VpaK11BI GGWCC 2 cut(s) 532, 646
VspI ATTAAT 1 cut(s) 330
XapI RAATTY 1 cut(s) 181
XbaI TCTAGA 1 cut(s) 418
XceI RCATGY 1 cut(s) 279
XmiI GTMKAC 1 cut(s) 569
XspI CTAG 2 cut(s) 419, 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.