Prupe.3G261300_v2.0.a1

Uncharacterized ACR, COG1678

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012172
Physical Location & Seq
Reverse (-)
24739488 .. 24740452
965 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G261300.1

Sequence Viewer

Length: 858 bp
ATGGAAGCTTGTTTCCTTGCCTCAAATTTCTTCACCTCAAATTCCATCAAAACTCCATTTCACTGCAAAAGAGTTGGCATTCCATCATCAATAACATGTTGCCGCATGGACTCATCTCCACCGTCCAATGATGATAGCAAACCTTCCATTGATACCGATTGGCGATCATTCAGAGCAAAACTGGTAGCTGCAGAAAAATCATCAAAGTCCAAAAAGCCCACTTCCTCACTTGTGGACCTTGACACTGTGGTTGATCTTCCGCAGCCCATCACTGTTGGTGACAAATGGGCTCACACAATCCATGAGCCTGAAAAGGGCTGCCTACTTCTTGCCACCGAAAAGCTTGACGGGGTCCATATTTTCGAGCGAACAGTCATTTTGGTCTTATCCACTGGGCCTTTGGGCCCATCCGGCATCATACTCAACCGGCCCTCCCTTATGTCGATCAAGGAGACACGATCCACAGCTCTTGATGTTGCGGGCACGTTCTCGGATAGGCCGTTATTCTTTGGCGGGCCTTTGGAGGAGGGGCTGTTCTTGGTGAGGCCCAAAGGGGGAGATGATGTGGTTGGGAGGAGTGGCGTTTTTGATGAGGTGATGAAGGGATTGTATTATGGGACAAAGGAAAGTGTGGGTTGTGCAGCTGAAATGGTGAAAAGGAATATGGTTGGGCTTGGGGAGTTTAGGTTCTTTGATGGGTATTGTGGATGGGAGAAAGAGCAATTGAAGGATGAAATAAGAGCTGGTTATTGGACTGTAGCAGCTTGCAGCCCAAGTGTAATTGATTTGAGGAGTGTGGGAAGTGTTGGGCTTTGGGAGAAGGTCCTTGGTCTTATGGGCCGTAGGAAGGTTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF179

Protein Analysis

286

Amino Acids

31.2

Weight (kDa)

8.07

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29240 AT3G29240
fragaria_vesca FvH4_6g47750
malus_domestica MD09G1058900.v1.1 MD17G1054800.v1.1
prunus_persica Prupe.3G261300_v2.0.a1
pyrus_communis pycom17g05230
rosa_chinensis RchiOBHm_Chr2g0166901
rosa_laevigata RLG00000021677
rosa_multiflora Rmu_sc0002735.1_g000015 Rmu_sc0005344.1_g000008
rosa_roxburghii Rroxscaffold_2G00084030 Rroxscaffold_2G00084430
rosa_rugosa Rorug02G0526200
rosa_samantha Rh2AG593200 Rh2BG604700 Rh2CG575400 Rh2DG616200
rosa_wichuraiana Rw2G049380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 103, 260, 479, 513
AclWI GGATC 1 cut(s) 453
AcsI RAATTY 2 cut(s) 25, 40
AfiI CCNNNNNNNGG 3 cut(s) 314, 554, 847
AflIII ACRYGT 1 cut(s) 95
AgsI TTSAA 1 cut(s) 727
AloI GAACNNNNNNTCC 4 cut(s) 518, 550, 671, 703
AluBI AGCT 7 cut(s) 8, 188, 343, 467, 644, 743, 764
AluI AGCT 7 cut(s) 8, 188, 343, 467, 644, 743, 764
Alw26I GTCTC 1 cut(s) 446
AlwI GGATC 1 cut(s) 453
AoxI GGCC 7 cut(s) 395, 403, 428, 497, 515, 545, 838
ApaI GGGCCC 1 cut(s) 407
ApeKI GCWGC 6 cut(s) 188, 262, 318, 641, 761, 768
ApoI RAATTY 2 cut(s) 25, 40
AsuHPI GGTGA 5 cut(s) 25, 290, 553, 607, 664
AvaII GGWCC 3 cut(s) 235, 352, 823
BaeGI GKGCMC 2 cut(s) 407, 485
BanII GRGCYC 2 cut(s) 292, 407
BbvI GCAGC 6 cut(s) 175, 274, 305, 653, 773, 780
BccI CCATC 6 cut(s) 53, 91, 275, 415, 689, 702
BceAI ACGGC 2 cut(s) 484, 825
BcoDI GTCTC 1 cut(s) 446
BfmI CTRYAG 2 cut(s) 189, 756
BglI GCCNNNNNGGC 1 cut(s) 411
BisI GCNGC 7 cut(s) 103, 189, 263, 319, 642, 762, 769
BlsI GCNGC 7 cut(s) 104, 190, 264, 320, 643, 763, 770
Bme18I GGWCC 3 cut(s) 235, 352, 823
BmiI GGNNCC 2 cut(s) 353, 405
BmrI ACTGGG 1 cut(s) 402
BmsI GCATC 1 cut(s) 423
BmuI ACTGGG 1 cut(s) 402
BsaJI CCNNGG 1 cut(s) 826
BsaXI ACNNNNNCTCC 8 cut(s) 416, 446, 518, 548, 549, 579, 671, 701
Bsc4I CCNNNNNNNGG 3 cut(s) 314, 554, 847
Bse118I RCCGGY 1 cut(s) 426
Bse1I ACTGG 2 cut(s) 186, 397
BseDI CCNNGG 1 cut(s) 826
BseGI GGATG 3 cut(s) 407, 713, 736
BseLI CCNNNNNNNGG 3 cut(s) 314, 554, 847
BseNI ACTGG 2 cut(s) 186, 397
BseRI GAGGAG 3 cut(s) 539, 589, 805
BseSI GKGCMC 2 cut(s) 407, 485
BseXI GCAGC 6 cut(s) 175, 274, 305, 653, 773, 780
BsgI GTGCAG 1 cut(s) 660
BshFI GGCC 7 cut(s) 397, 405, 430, 499, 517, 547, 840
BsiSI CCGG 2 cut(s) 411, 427
BslFI GGGAC 1 cut(s) 631
BslI CCNNNNNNNGG 3 cut(s) 314, 554, 847
BsmAI GTCTC 1 cut(s) 446
BsmFI GGGAC 1 cut(s) 631
BsmI GAATGC 1 cut(s) 78
BsnI GGCC 7 cut(s) 397, 405, 430, 499, 517, 547, 840
Bsp120I GGGCCC 1 cut(s) 403
Bsp1286I GDGCHC 3 cut(s) 292, 407, 485
Bsp143I GATC 4 cut(s) 164, 253, 444, 458
BspACI CCGC 4 cut(s) 103, 260, 479, 513
BspANI GGCC 7 cut(s) 397, 405, 430, 499, 517, 547, 840
BspLI GGNNCC 2 cut(s) 353, 405
BspMAI CTGCAG 1 cut(s) 193
BspPI GGATC 1 cut(s) 453
BsrFI RCCGGY 1 cut(s) 426
BsrI ACTGG 2 cut(s) 186, 397
BssAI RCCGGY 1 cut(s) 426
BssECI CCNNGG 1 cut(s) 826
BssMI GATC 4 cut(s) 164, 253, 444, 458
BssT1I CCWWGG 1 cut(s) 826
Bst4CI ACNGT 5 cut(s) 123, 247, 274, 373, 757
BstC8I GCNNGC 3 cut(s) 481, 515, 766
BstF5I GGATG 3 cut(s) 407, 713, 736
BstKTI GATC 4 cut(s) 167, 256, 447, 461
BstMAI GTCTC 1 cut(s) 446
BstMBI GATC 4 cut(s) 164, 253, 444, 458
BstMWI GCNNNNNNNGC 1 cut(s) 411
BstNSI RCATGY 1 cut(s) 99
BstSFI CTRYAG 2 cut(s) 189, 756
BstSLI GKGCMC 2 cut(s) 407, 485
BstV1I GCAGC 6 cut(s) 175, 274, 305, 653, 773, 780
BsuRI GGCC 7 cut(s) 397, 405, 430, 499, 517, 547, 840
BtsCI GGATG 3 cut(s) 407, 713, 736
BtsI GCAGTG 1 cut(s) 61
BtsIMutI CAGTG 4 cut(s) 61, 243, 270, 390
Cac8I GCNNGC 3 cut(s) 481, 515, 766
Cfr10I RCCGGY 1 cut(s) 426
CspCI CAANNNNNGTGG 2 cut(s) 451, 486
CviAII CATG 3 cut(s) 96, 106, 302
DpnI GATC 4 cut(s) 166, 255, 446, 460
DpnII GATC 4 cut(s) 164, 253, 444, 458
Eco130I CCWWGG 1 cut(s) 826
Eco24I GRGCYC 2 cut(s) 292, 407
Eco47I GGWCC 3 cut(s) 235, 352, 823
EcoO109I RGGNCCY 1 cut(s) 823
EcoT14I CCWWGG 1 cut(s) 826
EcoT38I GRGCYC 2 cut(s) 292, 407
ErhI CCWWGG 1 cut(s) 826
FaeI CATG 3 cut(s) 99, 109, 305
FaiI YATR 9 cut(s) 97, 107, 303, 357, 419, 440, 615, 665, 836
FaqI GGGAC 1 cut(s) 631
FatI CATG 3 cut(s) 95, 105, 301
FauI CCCGC 2 cut(s) 472, 506
Fnu4HI GCNGC 7 cut(s) 103, 189, 263, 319, 642, 762, 769
FokI GGATG 3 cut(s) 394, 720, 743
FriOI GRGCYC 2 cut(s) 292, 407
Fsp4HI GCNGC 7 cut(s) 103, 189, 263, 319, 642, 762, 769
GluI GCNGC 7 cut(s) 103, 189, 263, 319, 642, 762, 769
HaeIII GGCC 7 cut(s) 397, 405, 430, 499, 517, 547, 840
HapII CCGG 2 cut(s) 411, 427
Hin1II CATG 3 cut(s) 99, 109, 305
HindIII AAGCTT 2 cut(s) 6, 341
HinfI GANTC 1 cut(s) 110
HpaII CCGG 2 cut(s) 411, 427
HphI GGTGA 5 cut(s) 25, 290, 553, 607, 664
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 2 cut(s) 173, 493
Hpy188III TCNNGA 1 cut(s) 470
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 5 cut(s) 153, 595, 721, 814, 841
HpyCH4III ACNGT 5 cut(s) 123, 247, 274, 373, 757
HpyCH4IV ACGT 1 cut(s) 485
HpyCH4V TGCA 4 cut(s) 66, 191, 641, 768
HpyF10VI GCNNNNNNNGC 1 cut(s) 411
HpySE526I ACGT 1 cut(s) 485
Hsp92II CATG 3 cut(s) 99, 109, 305
Kzo9I GATC 4 cut(s) 164, 253, 444, 458
LpnPI CCDG 6 cut(s) 167, 321, 378, 424, 440, 729
Lsp1109I GCAGC 6 cut(s) 175, 274, 305, 653, 773, 780
LweI GCATC 1 cut(s) 423
MaeII ACGT 1 cut(s) 485
MaeIII GTNAC 1 cut(s) 278
MalI GATC 4 cut(s) 166, 255, 446, 460
MboI GATC 4 cut(s) 164, 253, 444, 458
MboII GAAGA 2 cut(s) 22, 248
MfeI CAATTG 1 cut(s) 722
MhlI GDGCHC 3 cut(s) 292, 407, 485
MluCI AATT 4 cut(s) 25, 40, 722, 780
MlyI GAGTC 1 cut(s) 104
MspA1I CMGCKG 1 cut(s) 644
MspI CCGG 2 cut(s) 411, 427
MunI CAATTG 1 cut(s) 722
Mva1269I GAATGC 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 411
NdeII GATC 4 cut(s) 164, 253, 444, 458
NlaIII CATG 3 cut(s) 99, 109, 305
NlaIV GGNNCC 2 cut(s) 353, 405
NmuCI GTSAC 1 cut(s) 278
NspI RCATGY 1 cut(s) 99
PciI ACATGT 1 cut(s) 95
PcsI WCGNNNNNNNCGW 1 cut(s) 497
PctI GAATGC 1 cut(s) 78
PflFI GACNNNGTC 1 cut(s) 350
PkrI GCNGC 7 cut(s) 104, 190, 264, 320, 643, 763, 770
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PpuMI RGGWCCY 1 cut(s) 823
PscI ACATGT 1 cut(s) 95
Psp5II RGGWCCY 1 cut(s) 823
PspN4I GGNNCC 2 cut(s) 353, 405
PspOMI GGGCCC 1 cut(s) 403
PspPPI RGGWCCY 1 cut(s) 823
PstI CTGCAG 1 cut(s) 193
PsyI GACNNNGTC 1 cut(s) 350
PvuII CAGCTG 1 cut(s) 644
SatI GCNGC 7 cut(s) 103, 189, 263, 319, 642, 762, 769
Sau3AI GATC 4 cut(s) 164, 253, 444, 458
SchI GAGTC 1 cut(s) 104
SduI GDGCHC 3 cut(s) 292, 407, 485
SfaNI GCATC 1 cut(s) 423
SfcI CTRYAG 2 cut(s) 189, 756
SinI GGWCC 3 cut(s) 235, 352, 823
Sse9I AATT 4 cut(s) 25, 40, 722, 780
SsiI CCGC 4 cut(s) 103, 260, 479, 513
StyI CCWWGG 1 cut(s) 826
TaaI ACNGT 5 cut(s) 123, 247, 274, 373, 757
TaiI ACGT 1 cut(s) 488
TaqI TCGA 2 cut(s) 363, 443
TasI AATT 4 cut(s) 25, 40, 722, 780
TauI GCSGC 1 cut(s) 105
TscAI CASTG 4 cut(s) 68, 250, 277, 397
TseFI GTSAC 1 cut(s) 278
TseI GCWGC 6 cut(s) 188, 262, 318, 641, 761, 768
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 2 cut(s) 614, 747
TspRI CASTG 4 cut(s) 68, 250, 277, 397
Tth111I GACNNNGTC 1 cut(s) 350
VpaK11BI GGWCC 3 cut(s) 235, 352, 823
XapI RAATTY 2 cut(s) 25, 40
XceI RCATGY 1 cut(s) 99
XcmI CCANNNNNNNNNTGG 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.