Rw2G049380

Uncharacterized ACR, COG1678

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0012172
Physical Location & Seq
Reverse (-)
77016233 .. 77017355
1123 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G049380.1

Sequence Viewer

Length: 1014 bp
ATGGGATTGGATCAGACACAACTTTGTGGTGCACATTGGCCTAACTTATTGTATATATCAGTATCATCATGCCCTTTATTCCTTGCCATCTTTGAACATTTGATCAGCCATCAAAACTCAAAAAGAGAAAAGAAACTAGAGCAGAAAGGAACCAGACATGGAAGCTTGTTTCCTTGCCTCGAATTCCTTCACCAAAACCTTAGAGTCTGCCACTTTCCCCAAGCGAAATTCGACTCAATTTCAAAGCAAAAGAGTTGCCGGATGGAGTCGCCTTCACCATCCGGTGATGACCACAAACATTCCATTAATACCGATTGGCGATCATTCAGAGCAAAACTGGTAGCTGCAGAAAAAGCATCAGTGCCCAAAGTGCCTAATTCCTCAGTTGTTGATCTAGACACTGTGGTGGATCAACCTCGGCCCATCACTGTTGGTGACAAGTGGGCTCATACGATCCACGAGCCCGAAAGAGGCTGCCTACTCCTGGCCACCGAAAAGCTGGACGGGGTCCATATTTTTGAACGGACGGTTATTTTGGTTTTGTCCACTGGGCCTTTGGGCCCGTCAGGCATCATACTGAACCGGCCCTCCCTAATGTCAATCAAAGAAACAAGATCAACGGCTGTAGATGTCGCCGGGACGTTCTCGGACAGGCCGCTGTTCTTCGGTGGGCCTTTGGAGGAAGGTCTGTTCTTAGTGAGGCCCAAGAAGGGTGATGTTATAGTTGGGAGGAGTGGTGTTTTTGATGAGGTGATGAAGGGATTGTATTATGGGACAAAGGAAAGTGTGGGTTGTGCAGCTGAAATGGTGAAGAGGAATATGGTTGAGCTTGGGGACTTCAGGTTCTTTGATGGGTATTGTGGGTGGGAAAAGGAGCAATTGAAGAATGAGATAAGAGCTGGTTATTGGACTGTAGCAGCTTGTAGCGCAAGTGTAATTGACTTGAGTAATGTGGGAAATGTTGGGCTTTGGGAGAAGGTTCTTGGGCTTATGGGCCGTAGAAAGGTTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF179

Protein Analysis

337

Amino Acids

37.48

Weight (kDa)

8.66

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF179 PF02622 172 - 332 1.7e-25 AlgH-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29240 AT3G29240
fragaria_vesca FvH4_6g47750
malus_domestica MD09G1058900.v1.1 MD17G1054800.v1.1
prunus_persica Prupe.3G261300_v2.0.a1
pyrus_communis pycom17g05230
rosa_chinensis RchiOBHm_Chr2g0166901
rosa_laevigata RLG00000021677
rosa_multiflora Rmu_sc0002735.1_g000015 Rmu_sc0005344.1_g000008
rosa_roxburghii Rroxscaffold_2G00084030 Rroxscaffold_2G00084430
rosa_rugosa Rorug02G0526200
rosa_samantha Rh2AG593200 Rh2BG604700 Rh2CG575400 Rh2DG616200
rosa_wichuraiana Rw2G049380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 656
AclWI GGATC 3 cut(s) 18, 417, 448
AcoI YGGCCR 1 cut(s) 486
AcsI RAATTY 2 cut(s) 182, 227
AcuI CTGAAG 1 cut(s) 823
AfiI CCNNNNNNNGG 4 cut(s) 470, 484, 710, 1003
AgsI TTSAA 4 cut(s) 95, 243, 521, 883
AjnI CCWGG 1 cut(s) 483
AleI CACNNNNGTG 1 cut(s) 404
AloI GAACNNNNNNTCC 6 cut(s) 572, 604, 674, 706, 827, 859
AluBI AGCT 7 cut(s) 165, 344, 499, 800, 829, 899, 920
AluI AGCT 7 cut(s) 165, 344, 499, 800, 829, 899, 920
Alw21I GWGCWC 1 cut(s) 34
Alw44I GTGCAC 1 cut(s) 30
AlwI GGATC 3 cut(s) 18, 417, 448
ApaI GGGCCC 1 cut(s) 563
ApaLI GTGCAC 1 cut(s) 30
ApeKI GCWGC 4 cut(s) 344, 474, 797, 917
ApoI RAATTY 2 cut(s) 182, 227
ArsI GACNNNNNNTTYG 2 cut(s) 517, 549
AseI ATTAAT 1 cut(s) 306
Asp700I GAANNNNTTC 1 cut(s) 186
AspLEI GCGC 1 cut(s) 929
AspS9I GGNCC 9 cut(s) 420, 508, 551, 559, 560, 585, 671, 702, 994
AsuC2I CCSGG 1 cut(s) 637
AsuHPI GGTGA 7 cut(s) 182, 267, 296, 446, 725, 763, 820
AvaII GGWCC 1 cut(s) 508
BaeGI GKGCMC 3 cut(s) 34, 366, 563
BalI TGGCCA 1 cut(s) 488
BanII GRGCYC 3 cut(s) 448, 465, 563
BauI CACGAG 1 cut(s) 458
Bbv12I GWGCWC 1 cut(s) 34
BbvI GCAGC 4 cut(s) 331, 461, 809, 929
BccI CCATC 6 cut(s) 95, 117, 256, 286, 431, 845
BceAI ACGGC 2 cut(s) 636, 981
BciT130I CCWGG 1 cut(s) 485
BclI TGATCA 1 cut(s) 102
BcnI CCSGG 1 cut(s) 637
BfaI CTAG 2 cut(s) 137, 395
BfmI CTRYAG 3 cut(s) 345, 624, 912
BglI GCCNNNNNGGC 1 cut(s) 567
BisI GCNGC 5 cut(s) 345, 475, 656, 798, 918
BlsI GCNGC 5 cut(s) 346, 476, 657, 799, 919
Bme1390I CCNGG 2 cut(s) 485, 637
Bme18I GGWCC 1 cut(s) 508
BmgT120I GGNCC 9 cut(s) 420, 508, 551, 559, 560, 585, 671, 702, 994
BmiI GGNNCC 3 cut(s) 151, 509, 561
BmrFI CCNGG 2 cut(s) 485, 637
BmrI ACTGGG 1 cut(s) 558
BmsI GCATC 2 cut(s) 365, 579
BmuI ACTGGG 1 cut(s) 558
BpuEI CTTGAG 1 cut(s) 964
BpuMI CCSGG 1 cut(s) 637
BsaJI CCNNGG 1 cut(s) 416
BsaWI WCCGGW 1 cut(s) 281
BsaXI ACNNNNNCTCC 4 cut(s) 572, 602, 721, 751
Bsc4I CCNNNNNNNGG 4 cut(s) 470, 484, 710, 1003
Bse118I RCCGGY 1 cut(s) 582
Bse1I ACTGG 2 cut(s) 342, 553
BseBI CCWGG 1 cut(s) 485
BseDI CCNNGG 1 cut(s) 416
BseGI GGATG 2 cut(s) 267, 278
BseLI CCNNNNNNNGG 4 cut(s) 470, 484, 710, 1003
BseMII CTCAG 1 cut(s) 396
BseNI ACTGG 2 cut(s) 342, 553
BseRI GAGGAG 1 cut(s) 745
BseSI GKGCMC 3 cut(s) 34, 366, 563
BseXI GCAGC 4 cut(s) 331, 461, 809, 929
BsgI GTGCAG 1 cut(s) 816
BsiHKAI GWGCWC 1 cut(s) 34
BsiSI CCGG 4 cut(s) 259, 282, 583, 636
BslFI GGGAC 3 cut(s) 652, 787, 848
BslI CCNNNNNNNGG 4 cut(s) 470, 484, 710, 1003
BsmFI GGGAC 3 cut(s) 652, 787, 848
Bsp120I GGGCCC 1 cut(s) 559
Bsp1286I GDGCHC 5 cut(s) 34, 366, 448, 465, 563
Bsp143I GATC 7 cut(s) 10, 102, 320, 391, 409, 453, 614
BspACI CCGC 1 cut(s) 656
BspCNI CTCAG 1 cut(s) 395
BspLI GGNNCC 3 cut(s) 151, 509, 561
BspMAI CTGCAG 1 cut(s) 349
BspPI GGATC 3 cut(s) 18, 417, 448
BsrFI RCCGGY 1 cut(s) 582
BsrI ACTGG 2 cut(s) 342, 553
BssAI RCCGGY 1 cut(s) 582
BssECI CCNNGG 1 cut(s) 416
BssMI GATC 7 cut(s) 10, 102, 320, 391, 409, 453, 614
BssSI CACGAG 1 cut(s) 458
Bst2BI CACGAG 1 cut(s) 458
Bst2UI CCWGG 1 cut(s) 485
Bst4CI ACNGT 4 cut(s) 403, 430, 529, 913
Bst6I CTCTTC 1 cut(s) 806
BstDEI CTNAG 3 cut(s) 200, 382, 694
BstF5I GGATG 2 cut(s) 267, 278
BstHHI GCGC 1 cut(s) 929
BstKTI GATC 7 cut(s) 13, 105, 323, 394, 412, 456, 617
BstMBI GATC 7 cut(s) 10, 102, 320, 391, 409, 453, 614
BstMWI GCNNNNNNNGC 4 cut(s) 353, 370, 567, 926
BstNI CCWGG 1 cut(s) 485
BstSCI CCNGG 2 cut(s) 483, 635
BstSFI CTRYAG 3 cut(s) 345, 624, 912
BstSLI GKGCMC 3 cut(s) 34, 366, 563
BstV1I GCAGC 4 cut(s) 331, 461, 809, 929
BtsCI GGATG 2 cut(s) 267, 278
BtsIMutI CAGTG 4 cut(s) 366, 399, 426, 546
CfoI GCGC 1 cut(s) 929
Cfr10I RCCGGY 1 cut(s) 582
Cfr13I GGNCC 9 cut(s) 420, 508, 551, 559, 560, 585, 671, 702, 994
CviAII CATG 2 cut(s) 69, 158
DdeI CTNAG 3 cut(s) 200, 382, 694
DpnI GATC 7 cut(s) 12, 104, 322, 393, 411, 455, 616
DpnII GATC 7 cut(s) 10, 102, 320, 391, 409, 453, 614
EaeI YGGCCR 1 cut(s) 486
Eam1104I CTCTTC 1 cut(s) 806
EarI CTCTTC 1 cut(s) 806
Eco24I GRGCYC 3 cut(s) 448, 465, 563
Eco47I GGWCC 1 cut(s) 508
Eco57I CTGAAG 1 cut(s) 823
EcoRI GAATTC 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 483
EcoT38I GRGCYC 3 cut(s) 448, 465, 563
FaeI CATG 2 cut(s) 72, 161
FaqI GGGAC 3 cut(s) 652, 787, 848
FatI CATG 2 cut(s) 68, 157
FbaI TGATCA 1 cut(s) 102
Fnu4HI GCNGC 5 cut(s) 345, 475, 656, 798, 918
FokI GGATG 2 cut(s) 265, 274
FriOI GRGCYC 3 cut(s) 448, 465, 563
Fsp4HI GCNGC 5 cut(s) 345, 475, 656, 798, 918
FspBI CTAG 2 cut(s) 137, 395
GlaI GCGC 1 cut(s) 928
GluI GCNGC 5 cut(s) 345, 475, 656, 798, 918
HapII CCGG 4 cut(s) 259, 282, 583, 636
HhaI GCGC 1 cut(s) 929
Hin1II CATG 2 cut(s) 72, 161
Hin6I GCGC 1 cut(s) 927
HinP1I GCGC 1 cut(s) 927
HindIII AAGCTT 1 cut(s) 163
HinfI GANTC 3 cut(s) 204, 233, 266
HpaII CCGG 4 cut(s) 259, 282, 583, 636
HphI GGTGA 7 cut(s) 182, 267, 296, 446, 725, 763, 820
Hpy166II GTNNAC 2 cut(s) 32, 546
Hpy188I TCNGA 3 cut(s) 15, 329, 649
Hpy188III TCNNGA 1 cut(s) 395
Hpy8I GTNNAC 2 cut(s) 32, 546
HpyAV CCTTC 6 cut(s) 197, 282, 677, 703, 751, 970
HpyCH4III ACNGT 4 cut(s) 403, 430, 529, 913
HpyCH4IV ACGT 1 cut(s) 641
HpyCH4V TGCA 3 cut(s) 32, 347, 797
HpyF10VI GCNNNNNNNGC 4 cut(s) 353, 370, 567, 926
HpyF3I CTNAG 3 cut(s) 200, 382, 694
HpySE526I ACGT 1 cut(s) 641
Hsp92II CATG 2 cut(s) 72, 161
HspAI GCGC 1 cut(s) 927
Ksp22I TGATCA 1 cut(s) 102
Kzo9I GATC 7 cut(s) 10, 102, 320, 391, 409, 453, 614
LmnI GCTCC 1 cut(s) 874
Lsp1109I GCAGC 4 cut(s) 331, 461, 809, 929
LweI GCATC 2 cut(s) 365, 579
MaeI CTAG 2 cut(s) 137, 395
MaeII ACGT 1 cut(s) 641
MaeIII GTNAC 1 cut(s) 434
MalI GATC 7 cut(s) 12, 104, 322, 393, 411, 455, 616
MboI GATC 7 cut(s) 10, 102, 320, 391, 409, 453, 614
MboII GAAGA 3 cut(s) 655, 823, 895
MfeI CAATTG 1 cut(s) 878
MhlI GDGCHC 5 cut(s) 34, 366, 448, 465, 563
MlsI TGGCCA 1 cut(s) 488
MluCI AATT 6 cut(s) 182, 227, 237, 376, 878, 936
MluNI TGGCCA 1 cut(s) 488
MlyI GAGTC 3 cut(s) 213, 227, 275
Mox20I TGGCCA 1 cut(s) 488
MroXI GAANNNNTTC 1 cut(s) 186
MscI TGGCCA 1 cut(s) 488
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 1 cut(s) 404
Msp20I TGGCCA 1 cut(s) 488
MspA1I CMGCKG 2 cut(s) 658, 800
MspI CCGG 4 cut(s) 259, 282, 583, 636
MspR9I CCNGG 2 cut(s) 485, 637
MunI CAATTG 1 cut(s) 878
MvaI CCWGG 1 cut(s) 485
MwoI GCNNNNNNNGC 4 cut(s) 353, 370, 567, 926
NciI CCSGG 1 cut(s) 637
NdeII GATC 7 cut(s) 10, 102, 320, 391, 409, 453, 614
NlaIII CATG 2 cut(s) 72, 161
NlaIV GGNNCC 3 cut(s) 151, 509, 561
NmeAIII GCCGAG 1 cut(s) 397
NmuCI GTSAC 1 cut(s) 434
OliI CACNNNNGTG 1 cut(s) 404
PdmI GAANNNNTTC 1 cut(s) 186
PflFI GACNNNGTC 1 cut(s) 506
PkrI GCNGC 5 cut(s) 346, 476, 657, 799, 919
PleI GAGTC 3 cut(s) 212, 227, 274
PpsI GAGTC 3 cut(s) 212, 227, 274
PshBI ATTAAT 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 483
PspGI CCWGG 1 cut(s) 483
PspN4I GGNNCC 3 cut(s) 151, 509, 561
PspOMI GGGCCC 1 cut(s) 559
PspPI GGNCC 9 cut(s) 420, 508, 551, 559, 560, 585, 671, 702, 994
PstI CTGCAG 1 cut(s) 349
PsyI GACNNNGTC 1 cut(s) 506
PvuII CAGCTG 1 cut(s) 800
RseI CAYNNNNRTG 1 cut(s) 404
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 5 cut(s) 345, 475, 656, 798, 918
Sau3AI GATC 7 cut(s) 10, 102, 320, 391, 409, 453, 614
Sau96I GGNCC 9 cut(s) 420, 508, 551, 559, 560, 585, 671, 702, 994
SchI GAGTC 3 cut(s) 213, 227, 275
ScrFI CCNGG 2 cut(s) 485, 637
SduI GDGCHC 5 cut(s) 34, 366, 448, 465, 563
SfaNI GCATC 2 cut(s) 365, 579
SfcI CTRYAG 3 cut(s) 345, 624, 912
SinI GGWCC 1 cut(s) 508
SmiMI CAYNNNNRTG 1 cut(s) 404
SmlI CTYRAG 1 cut(s) 943
SmoI CTYRAG 1 cut(s) 943
Sse9I AATT 6 cut(s) 182, 227, 237, 376, 878, 936
SsiI CCGC 1 cut(s) 656
SspMI CTAG 2 cut(s) 137, 395
StyD4I CCNGG 2 cut(s) 483, 635
TaaI ACNGT 4 cut(s) 403, 430, 529, 913
TaiI ACGT 1 cut(s) 644
TaqI TCGA 2 cut(s) 180, 231
TasI AATT 6 cut(s) 182, 227, 237, 376, 878, 936
TauI GCSGC 1 cut(s) 658
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 4 cut(s) 366, 406, 433, 553
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 4 cut(s) 344, 474, 797, 917
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 1 cut(s) 770
TspGWI ACGGA 1 cut(s) 538
TspRI CASTG 4 cut(s) 366, 406, 433, 553
Tth111I GACNNNGTC 1 cut(s) 506
VneI GTGCAC 1 cut(s) 30
VpaK11BI GGWCC 1 cut(s) 508
VspI ATTAAT 1 cut(s) 306
XapI RAATTY 2 cut(s) 182, 227
XbaI TCTAGA 1 cut(s) 394
XcmI CCANNNNNNNNNTGG 2 cut(s) 496, 553
XmnI GAANNNNTTC 1 cut(s) 186
XspI CTAG 2 cut(s) 137, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.