Rroxscaffold_2G00084030

Uncharacterized ACR, COG1678

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012172
Physical Location & Seq
Forward (+)
6530587 .. 6531813
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00084030.1

Sequence Viewer

Length: 882 bp
ATGGAAGCTTGTTTCCTTGCCTCGAATTCCTTCACCAAAACCTTAGAGTCTGCCACTTTCCCCAAGCGAAATTCGACTCAATTTCAAAGCAAAAGAGTTGGCATTCCATCTTCAATCACAAGTTGCCGGATGGAGTCGCCTTCACCGTCCGGTGATGACCACAAACCTTCCATTAATACCGATTGGCGATCATTCAGAGCAAAACTGGTAGCTGCAGAAAAAGCATCAGTGCCCAAAGTGCCTAATTCCTCAGTTGTTGATCTAGACACTGTGGTGGATCAACCTCGATCCATCACTGTTGGTGACAAGTGGGCTCATATGATCCACGAGCCCGAAACAGGCTGCCTACTCCTTGCCACCGAAAACCTGGACGGGGTCCATATTTTTGAACGGACAGTTATTTTGGTTTTGTCCACGGGGCCTTTGGGCCCGTCAGGCATCATACTGAACCGGCCCTCCCTAATGTCAATCAAAGAAACAAGATCAACGGCTCTAGATGTCGCCGGGACGTTCTCGGACAGGCCGCTGTTCTTCGGTGGCCCTTTGGAGGAAGGGCTGTTCTTAGTGAGGCCCAAGAAGGGTGATGTTATGGTTGGGAGCAGTGGTGTTTTTGATGAGGTGATGAAGGGATTGTATTATGGGACAAAGGAAAGTGTGGGTTGTGCAGCTGAAATGGTGAAGAGGAATATGGTTGAGCTTGGGGACTTCAGGTTCTTTGATGGGTATTGTGGGTGGGAAAAGGAGCAATTGCAGAATGAGATAAGAGCTGGTTATTGGACTGTAGCAGCTTGTAGCCCAAGTGTAATTGACTTGAGTAATGTGGGAAGTGTAGGGCTTTGGGAGAAGGTTCTTGGGCTTATGGGCCGTAGAAAGGTTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF179

Protein Analysis

293

Amino Acids

32.06

Weight (kDa)

6.91

Isoelectric Point (pI)

47.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF179 PF02622 128 - 288 4.1e-26 AlgH-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G29240 AT3G29240
fragaria_vesca FvH4_6g47750
malus_domestica MD09G1058900.v1.1 MD17G1054800.v1.1
prunus_persica Prupe.3G261300_v2.0.a1
pyrus_communis pycom17g05230
rosa_chinensis RchiOBHm_Chr2g0166901
rosa_laevigata RLG00000021677
rosa_multiflora Rmu_sc0002735.1_g000015 Rmu_sc0005344.1_g000008
rosa_roxburghii Rroxscaffold_2G00084030 Rroxscaffold_2G00084430
rosa_rugosa Rorug02G0526200
rosa_samantha Rh2AG593200 Rh2BG604700 Rh2CG575400 Rh2DG616200
rosa_wichuraiana Rw2G049380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 524
AclWI GGATC 3 cut(s) 282, 285, 316
AcsI RAATTY 2 cut(s) 25, 70
AcuI CTGAAG 1 cut(s) 691
AfiI CCNNNNNNNGG 5 cut(s) 338, 373, 547, 578, 871
AgsI TTSAA 3 cut(s) 86, 114, 389
AjnI CCWGG 1 cut(s) 366
AleI CACNNNNGTG 1 cut(s) 272
AloI GAACNNNNNNTCC 6 cut(s) 440, 472, 542, 574, 695, 727
AluBI AGCT 6 cut(s) 8, 212, 668, 697, 767, 788
AluI AGCT 6 cut(s) 8, 212, 668, 697, 767, 788
AlwI GGATC 3 cut(s) 282, 285, 316
AoxI GGCC 7 cut(s) 419, 427, 452, 521, 538, 569, 862
ApaI GGGCCC 1 cut(s) 431
ApeKI GCWGC 4 cut(s) 212, 342, 665, 785
ApoI RAATTY 2 cut(s) 25, 70
ArsI GACNNNNNNTTYG 2 cut(s) 385, 417
AseI ATTAAT 1 cut(s) 174
Asp700I GAANNNNTTC 1 cut(s) 29
AspS9I GGNCC 8 cut(s) 376, 419, 427, 428, 453, 539, 570, 862
AsuC2I CCSGG 1 cut(s) 505
AsuHPI GGTGA 7 cut(s) 25, 135, 164, 314, 593, 631, 688
AvaII GGWCC 1 cut(s) 376
BaeGI GKGCMC 2 cut(s) 234, 431
BanII GRGCYC 3 cut(s) 316, 333, 431
BauI CACGAG 1 cut(s) 326
BbvI GCAGC 4 cut(s) 199, 329, 677, 797
BccI CCATC 4 cut(s) 115, 124, 299, 713
BceAI ACGGC 2 cut(s) 504, 849
BciT130I CCWGG 1 cut(s) 368
BcnI CCSGG 1 cut(s) 505
BfaI CTAG 2 cut(s) 263, 494
BfmI CTRYAG 2 cut(s) 213, 780
BglI GCCNNNNNGGC 1 cut(s) 435
BisI GCNGC 5 cut(s) 213, 343, 524, 666, 786
BlsI GCNGC 5 cut(s) 214, 344, 525, 667, 787
Bme1390I CCNGG 2 cut(s) 368, 505
Bme18I GGWCC 1 cut(s) 376
BmgT120I GGNCC 8 cut(s) 376, 419, 427, 428, 453, 539, 570, 862
BmiI GGNNCC 3 cut(s) 377, 420, 429
BmrFI CCNGG 2 cut(s) 368, 505
BmsI GCATC 2 cut(s) 233, 447
BpuEI CTTGAG 1 cut(s) 832
BpuMI CCSGG 1 cut(s) 505
BsaJI CCNNGG 1 cut(s) 414
BsaWI WCCGGW 1 cut(s) 149
BsaXI ACNNNNNCTCC 4 cut(s) 440, 470, 589, 619
Bsc4I CCNNNNNNNGG 5 cut(s) 338, 373, 547, 578, 871
Bse118I RCCGGY 1 cut(s) 450
Bse1I ACTGG 1 cut(s) 210
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 1 cut(s) 414
BseGI GGATG 1 cut(s) 135
BseLI CCNNNNNNNGG 5 cut(s) 338, 373, 547, 578, 871
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 210
BseSI GKGCMC 2 cut(s) 234, 431
BseXI GCAGC 4 cut(s) 199, 329, 677, 797
BsgI GTGCAG 1 cut(s) 684
BshFI GGCC 7 cut(s) 421, 429, 454, 523, 540, 571, 864
BsiSI CCGG 4 cut(s) 127, 150, 451, 504
BslFI GGGAC 3 cut(s) 520, 655, 716
BslI CCNNNNNNNGG 5 cut(s) 338, 373, 547, 578, 871
BsmFI GGGAC 3 cut(s) 520, 655, 716
BsmI GAATGC 1 cut(s) 102
BsnI GGCC 7 cut(s) 421, 429, 454, 523, 540, 571, 864
Bsp120I GGGCCC 1 cut(s) 427
Bsp1286I GDGCHC 4 cut(s) 234, 316, 333, 431
Bsp143I GATC 6 cut(s) 188, 259, 277, 287, 321, 482
BspACI CCGC 1 cut(s) 524
BspANI GGCC 7 cut(s) 421, 429, 454, 523, 540, 571, 864
BspCNI CTCAG 1 cut(s) 263
BspLI GGNNCC 3 cut(s) 377, 420, 429
BspMAI CTGCAG 1 cut(s) 217
BspPI GGATC 3 cut(s) 282, 285, 316
BsrFI RCCGGY 1 cut(s) 450
BsrI ACTGG 1 cut(s) 210
BssAI RCCGGY 1 cut(s) 450
BssECI CCNNGG 1 cut(s) 414
BssMI GATC 6 cut(s) 188, 259, 277, 287, 321, 482
BssSI CACGAG 1 cut(s) 326
Bst2BI CACGAG 1 cut(s) 326
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 5 cut(s) 147, 271, 298, 397, 781
Bst6I CTCTTC 1 cut(s) 674
BstDEI CTNAG 3 cut(s) 43, 250, 562
BstDSI CCRYGG 1 cut(s) 414
BstF5I GGATG 1 cut(s) 135
BstKTI GATC 6 cut(s) 191, 262, 280, 290, 324, 485
BstMBI GATC 6 cut(s) 188, 259, 277, 287, 321, 482
BstMWI GCNNNNNNNGC 3 cut(s) 221, 238, 435
BstNI CCWGG 1 cut(s) 368
BstSCI CCNGG 2 cut(s) 366, 503
BstSFI CTRYAG 2 cut(s) 213, 780
BstSLI GKGCMC 2 cut(s) 234, 431
BstV1I GCAGC 4 cut(s) 199, 329, 677, 797
BsuRI GGCC 7 cut(s) 421, 429, 454, 523, 540, 571, 864
BtgI CCRYGG 1 cut(s) 414
BtsCI GGATG 1 cut(s) 135
BtsI GCAGTG 1 cut(s) 607
BtsIMutI CAGTG 4 cut(s) 234, 267, 294, 607
Cfr10I RCCGGY 1 cut(s) 450
Cfr13I GGNCC 8 cut(s) 376, 419, 427, 428, 453, 539, 570, 862
DdeI CTNAG 3 cut(s) 43, 250, 562
DpnI GATC 6 cut(s) 190, 261, 279, 289, 323, 484
DpnII GATC 6 cut(s) 188, 259, 277, 287, 321, 482
Eam1104I CTCTTC 1 cut(s) 674
EarI CTCTTC 1 cut(s) 674
Eco24I GRGCYC 3 cut(s) 316, 333, 431
Eco47I GGWCC 1 cut(s) 376
Eco57I CTGAAG 1 cut(s) 691
EcoO109I RGGNCCY 1 cut(s) 419
EcoRI GAATTC 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 366
EcoT38I GRGCYC 3 cut(s) 316, 333, 431
FaiI YATR 8 cut(s) 318, 320, 381, 443, 590, 639, 689, 860
FaqI GGGAC 3 cut(s) 520, 655, 716
FauNDI CATATG 1 cut(s) 318
Fnu4HI GCNGC 5 cut(s) 213, 343, 524, 666, 786
FokI GGATG 1 cut(s) 142
FriOI GRGCYC 3 cut(s) 316, 333, 431
Fsp4HI GCNGC 5 cut(s) 213, 343, 524, 666, 786
FspBI CTAG 2 cut(s) 263, 494
GluI GCNGC 5 cut(s) 213, 343, 524, 666, 786
HaeIII GGCC 7 cut(s) 421, 429, 454, 523, 540, 571, 864
HapII CCGG 4 cut(s) 127, 150, 451, 504
HindIII AAGCTT 1 cut(s) 6
HinfI GANTC 3 cut(s) 47, 76, 134
HpaII CCGG 4 cut(s) 127, 150, 451, 504
HphI GGTGA 7 cut(s) 25, 135, 164, 314, 593, 631, 688
Hpy166II GTNNAC 1 cut(s) 414
Hpy188I TCNGA 2 cut(s) 197, 517
Hpy188III TCNNGA 2 cut(s) 263, 494
Hpy8I GTNNAC 1 cut(s) 414
HpyAV CCTTC 7 cut(s) 40, 150, 177, 545, 571, 619, 838
HpyCH4III ACNGT 5 cut(s) 147, 271, 298, 397, 781
HpyCH4IV ACGT 1 cut(s) 509
HpyCH4V TGCA 3 cut(s) 215, 665, 751
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 238, 435
HpyF3I CTNAG 3 cut(s) 43, 250, 562
HpySE526I ACGT 1 cut(s) 509
Kzo9I GATC 6 cut(s) 188, 259, 277, 287, 321, 482
LmnI GCTCC 2 cut(s) 597, 742
Lsp1109I GCAGC 4 cut(s) 199, 329, 677, 797
LweI GCATC 2 cut(s) 233, 447
MaeI CTAG 2 cut(s) 263, 494
MaeII ACGT 1 cut(s) 509
MaeIII GTNAC 1 cut(s) 302
MalI GATC 6 cut(s) 190, 261, 279, 289, 323, 484
MboI GATC 6 cut(s) 188, 259, 277, 287, 321, 482
MboII GAAGA 3 cut(s) 102, 523, 691
MfeI CAATTG 1 cut(s) 746
MhlI GDGCHC 4 cut(s) 234, 316, 333, 431
MluCI AATT 6 cut(s) 25, 70, 80, 244, 746, 804
MlyI GAGTC 3 cut(s) 56, 70, 143
MnlI CCTC 8 cut(s) 31, 259, 294, 466, 541, 561, 610, 675
MroXI GAANNNNTTC 1 cut(s) 29
MseI TTAA 1 cut(s) 174
MslI CAYNNNNRTG 1 cut(s) 272
MspA1I CMGCKG 2 cut(s) 526, 668
MspI CCGG 4 cut(s) 127, 150, 451, 504
MspR9I CCNGG 2 cut(s) 368, 505
MunI CAATTG 1 cut(s) 746
Mva1269I GAATGC 1 cut(s) 102
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 3 cut(s) 221, 238, 435
NciI CCSGG 1 cut(s) 505
NdeI CATATG 1 cut(s) 318
NdeII GATC 6 cut(s) 188, 259, 277, 287, 321, 482
NlaIV GGNNCC 3 cut(s) 377, 420, 429
NmuCI GTSAC 1 cut(s) 302
OliI CACNNNNGTG 1 cut(s) 272
PcsI WCGNNNNNNNCGW 1 cut(s) 143
PctI GAATGC 1 cut(s) 102
PdmI GAANNNNTTC 1 cut(s) 29
PflFI GACNNNGTC 1 cut(s) 374
PkrI GCNGC 5 cut(s) 214, 344, 525, 667, 787
PleI GAGTC 3 cut(s) 55, 70, 142
PpsI GAGTC 3 cut(s) 55, 70, 142
PshBI ATTAAT 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspN4I GGNNCC 3 cut(s) 377, 420, 429
PspOMI GGGCCC 1 cut(s) 427
PspPI GGNCC 8 cut(s) 376, 419, 427, 428, 453, 539, 570, 862
PstI CTGCAG 1 cut(s) 217
PsyI GACNNNGTC 1 cut(s) 374
PvuII CAGCTG 1 cut(s) 668
RseI CAYNNNNRTG 1 cut(s) 272
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 5 cut(s) 213, 343, 524, 666, 786
Sau3AI GATC 6 cut(s) 188, 259, 277, 287, 321, 482
Sau96I GGNCC 8 cut(s) 376, 419, 427, 428, 453, 539, 570, 862
SchI GAGTC 3 cut(s) 56, 70, 143
ScrFI CCNGG 2 cut(s) 368, 505
SduI GDGCHC 4 cut(s) 234, 316, 333, 431
SfaNI GCATC 2 cut(s) 233, 447
SfcI CTRYAG 2 cut(s) 213, 780
SinI GGWCC 1 cut(s) 376
SmiMI CAYNNNNRTG 1 cut(s) 272
SmlI CTYRAG 1 cut(s) 811
SmoI CTYRAG 1 cut(s) 811
Sse9I AATT 6 cut(s) 25, 70, 80, 244, 746, 804
SsiI CCGC 1 cut(s) 524
SspMI CTAG 2 cut(s) 263, 494
StyD4I CCNGG 2 cut(s) 366, 503
TaaI ACNGT 5 cut(s) 147, 271, 298, 397, 781
TaiI ACGT 1 cut(s) 512
TaqI TCGA 3 cut(s) 23, 74, 286
TasI AATT 6 cut(s) 25, 70, 80, 244, 746, 804
TauI GCSGC 1 cut(s) 526
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 4 cut(s) 234, 274, 301, 607
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 4 cut(s) 212, 342, 665, 785
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 1 cut(s) 638
TspGWI ACGGA 1 cut(s) 406
TspRI CASTG 4 cut(s) 234, 274, 301, 607
Tth111I GACNNNGTC 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 376
VspI ATTAAT 1 cut(s) 174
XapI RAATTY 2 cut(s) 25, 70
XbaI TCTAGA 2 cut(s) 262, 493
XcmI CCANNNNNNNNNTGG 2 cut(s) 364, 421
XmnI GAANNNNTTC 1 cut(s) 29
XspI CTAG 2 cut(s) 263, 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.