AT3G29270

RING-type zinc-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009032
Physical Location & Seq
Forward (+)
11234173 .. 11236458
2286 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G29270.1

Sequence Viewer

Length: 792 bp
ATGTTATCCATCCCTGATACTAGAATGTGGAATCTAGCATCGAGTTATCTTACGGGAAACATTGGACCGAAAAACGATATCAGAAGACCGGTCCATGCTCATGCGGAGTGTTCAGATGACGATGTATCTTCTGTAGGTAGTAAAGACGAAGGTCTCGAGTGTCCTATATGCTGGGAATCATTTAATATAGTTGAAAACGTTCCGTATGTGTTATGGTGTGGACATACGATGTGTAAAAACTGCATTTTGGGACTTCAATGGGCTATTGTGAAATTGCCTACTCACCCGGTTCAGCTTCCTCTCTTCATTTCATGCCCCTGGTGCAACCTTTTGTCTTTCCGTCTGGTCTTCAGAGGAACACTCAGATTCCCTCACAAGAACTACTTTGTGCTTTGGATGGTCGAGAGGATGAATGGAGAGAGACGTAACTCACCTGGTGGAGCTCAAACAGATGGAAACAATGATCATACAAGGGAAACTCCATCTCCATGTCTCCACAATCGCCATCATCGCAGTCAACCTGAACCATCACGTTCTGTTAATGATCATCGCATTCCAAGGGACAACATACAAACTTCACTGAGGAAGTCTCTGGTTTTCTTTGTCCAGTTGACAGCAAAGTTCCCATTAGTTGTCATATTTCTGCTGATAATACTCTATGCAATACCGACCAGTGCAGCCATATTGGCGATGTACATTCTAGTCACTCTCTTGCTGGCTCTACCGTCGTTTCTCATCCTCTACTTCGCTTATCCTTGTCTCGACTGGCTTGTTCGAGAGATTGTCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_UBOX

Protein Analysis

263

Amino Acids

30.06

Weight (kDa)

8.34

Isoelectric Point (pI)

56.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_5 PF14634 53 - 108 1.6e-06 zinc-RING finger domain
zf-RING_UBOX PF13445 54 - 88 1.1e-08 RING-type zinc-finger
RING_XB3-XBAT31 PF24921 54 - 108 5.4e-06 E3 ubiquitin-protein ligase XB3/XBAT31 RING finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 104
AclI AACGTT 1 cut(s) 198
AcuI CTGAAG 1 cut(s) 334
AdeI CACNNNGTG 1 cut(s) 437
AfaI GTAC 1 cut(s) 695
AgeI ACCGGT 1 cut(s) 88
AgsI TTSAA 2 cut(s) 194, 257
AjnI CCWGG 2 cut(s) 317, 433
AluBI AGCT 2 cut(s) 295, 443
AluI AGCT 2 cut(s) 295, 443
Alw21I GWGCWC 1 cut(s) 445
Alw26I GTCTC 5 cut(s) 158, 415, 497, 594, 764
Ama87I CYCGRG 1 cut(s) 155
ApeKI GCWGC 1 cut(s) 677
AsiGI ACCGGT 1 cut(s) 88
Asp700I GAANNNNTTC 1 cut(s) 198
AspS9I GGNCC 2 cut(s) 65, 91
AsuC2I CCSGG 1 cut(s) 287
AsuHPI GGTGA 2 cut(s) 275, 423
AvaI CYCGRG 1 cut(s) 155
AvaII GGWCC 2 cut(s) 65, 91
BanII GRGCYC 1 cut(s) 445
BbsI GAAGAC 2 cut(s) 91, 340
Bbv12I GWGCWC 1 cut(s) 445
BbvI GCAGC 1 cut(s) 689
BccI CCATC 6 cut(s) 17, 391, 446, 490, 513, 535
BciT130I CCWGG 2 cut(s) 319, 435
BclI TGATCA 2 cut(s) 463, 544
BcnI CCSGG 1 cut(s) 287
BcoDI GTCTC 5 cut(s) 158, 415, 497, 594, 764
BfaI CTAG 3 cut(s) 21, 35, 701
BfmI CTRYAG 1 cut(s) 132
BglI GCCNNNNNGGC 1 cut(s) 686
BisI GCNGC 1 cut(s) 678
BlsI GCNGC 1 cut(s) 679
Bme1390I CCNGG 3 cut(s) 287, 319, 435
Bme18I GGWCC 2 cut(s) 65, 91
BmeT110I CYCGRG 1 cut(s) 155
BmgT120I GGNCC 2 cut(s) 65, 91
BmrFI CCNGG 3 cut(s) 287, 319, 435
BmsI GCATC 1 cut(s) 47
BoxI GACNNNNGTC 1 cut(s) 150
BpiI GAAGAC 2 cut(s) 91, 340
BplI GAGNNNNNCTC 4 cut(s) 345, 377, 574, 606
BpuMI CCSGG 1 cut(s) 287
BsaI GGTCTC 1 cut(s) 158
BsaJI CCNNGG 2 cut(s) 317, 557
BsaWI WCCGGW 1 cut(s) 88
BsaXI ACNNNNNCTCC 2 cut(s) 469, 499
Bse118I RCCGGY 1 cut(s) 88
Bse1I ACTGG 3 cut(s) 607, 672, 770
BseBI CCWGG 2 cut(s) 319, 435
BseDI CCNNGG 2 cut(s) 317, 557
BseGI GGATG 4 cut(s) 9, 402, 414, 735
BseMII CTCAG 2 cut(s) 376, 572
BseNI ACTGG 3 cut(s) 607, 672, 770
BseXI GCAGC 1 cut(s) 689
BseYI CCCAGC 1 cut(s) 171
BsgI GTGCAG 1 cut(s) 696
BshTI ACCGGT 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 445
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 2 cut(s) 89, 287
BslFI GGGAC 2 cut(s) 264, 575
BsmAI GTCTC 5 cut(s) 158, 415, 497, 594, 764
BsmBI CGTCTC 1 cut(s) 415
BsmFI GGGAC 2 cut(s) 264, 575
BsmI GAATGC 1 cut(s) 552
Bso31I GGTCTC 1 cut(s) 158
BsoBI CYCGRG 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 445
Bsp1407I TGTACA 1 cut(s) 693
Bsp143I GATC 2 cut(s) 463, 544
BspACI CCGC 1 cut(s) 104
BspCNI CTCAG 2 cut(s) 375, 573
BspTNI GGTCTC 1 cut(s) 158
BsrFI RCCGGY 1 cut(s) 88
BsrGI TGTACA 1 cut(s) 693
BsrI ACTGG 3 cut(s) 607, 672, 770
BssAI RCCGGY 1 cut(s) 88
BssECI CCNNGG 2 cut(s) 317, 557
BssMI GATC 2 cut(s) 463, 544
BssT1I CCWWGG 1 cut(s) 557
Bst2UI CCWGG 2 cut(s) 319, 435
Bst4CI ACNGT 1 cut(s) 726
Bst6I CTCTTC 1 cut(s) 308
BstAUI TGTACA 1 cut(s) 693
BstC8I GCNNGC 1 cut(s) 717
BstDEI CTNAG 2 cut(s) 362, 581
BstF5I GGATG 4 cut(s) 9, 402, 414, 735
BstKTI GATC 2 cut(s) 466, 547
BstMAI GTCTC 5 cut(s) 158, 415, 497, 594, 764
BstMBI GATC 2 cut(s) 463, 544
BstMWI GCNNNNNNNGC 3 cut(s) 321, 510, 686
BstNI CCWGG 2 cut(s) 319, 435
BstPAI GACNNNNGTC 1 cut(s) 150
BstSCI CCNGG 3 cut(s) 285, 317, 433
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 689
BstV2I GAAGAC 2 cut(s) 91, 340
BtgZI GCGATG 3 cut(s) 494, 533, 704
BtsCI GGATG 4 cut(s) 9, 402, 414, 735
BtsIMutI CAGTG 2 cut(s) 578, 679
Cac8I GCNNGC 1 cut(s) 717
Cfr10I RCCGGY 1 cut(s) 88
Cfr13I GGNCC 2 cut(s) 65, 91
CsiI ACCWGGT 1 cut(s) 433
Csp6I GTAC 1 cut(s) 694
CspAI ACCGGT 1 cut(s) 88
CviAII CATG 5 cut(s) 95, 101, 312, 489, 789
CviJI RGCY 6 cut(s) 263, 295, 443, 680, 719, 769
CviKI_1 RGCY 6 cut(s) 263, 295, 443, 680, 719, 769
CviQI GTAC 1 cut(s) 694
DdeI CTNAG 2 cut(s) 362, 581
DpnI GATC 2 cut(s) 465, 546
DpnII GATC 2 cut(s) 463, 544
DraIII CACNNNGTG 1 cut(s) 437
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
Ecl136II GAGCTC 1 cut(s) 443
Eco130I CCWWGG 1 cut(s) 557
Eco24I GRGCYC 1 cut(s) 445
Eco31I GGTCTC 1 cut(s) 158
Eco32I GATATC 1 cut(s) 79
Eco47I GGWCC 2 cut(s) 65, 91
Eco53kI GAGCTC 1 cut(s) 443
Eco57I CTGAAG 1 cut(s) 334
Eco88I CYCGRG 1 cut(s) 155
EcoICRI GAGCTC 1 cut(s) 443
EcoRII CCWGG 2 cut(s) 317, 433
EcoRV GATATC 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 557
EcoT38I GRGCYC 1 cut(s) 445
ErhI CCWWGG 1 cut(s) 557
Esp3I CGTCTC 1 cut(s) 415
FaeI CATG 5 cut(s) 98, 104, 315, 492, 792
FalI AAGNNNNNCTT 2 cut(s) 368, 400
FaqI GGGAC 2 cut(s) 264, 575
FatI CATG 5 cut(s) 94, 100, 311, 488, 788
FbaI TGATCA 2 cut(s) 463, 544
Fnu4HI GCNGC 1 cut(s) 678
FokI GGATG 3 cut(s) 409, 421, 722
FriOI GRGCYC 1 cut(s) 445
Fsp4HI GCNGC 1 cut(s) 678
FspBI CTAG 3 cut(s) 21, 35, 701
GluI GCNGC 1 cut(s) 678
GsaI CCCAGC 1 cut(s) 175
HapII CCGG 2 cut(s) 89, 287
Hin1II CATG 5 cut(s) 98, 104, 315, 492, 792
HincII GTYRAC 2 cut(s) 518, 612
HindII GTYRAC 2 cut(s) 518, 612
HinfI GANTC 3 cut(s) 31, 176, 366
HpaII CCGG 2 cut(s) 89, 287
HphI GGTGA 2 cut(s) 275, 423
Hpy166II GTNNAC 3 cut(s) 221, 518, 612
Hpy188I TCNGA 4 cut(s) 83, 115, 353, 365
Hpy188III TCNNGA 4 cut(s) 155, 403, 761, 776
Hpy8I GTNNAC 3 cut(s) 221, 518, 612
Hpy99I CGWCG 1 cut(s) 730
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 726
HpyCH4IV ACGT 3 cut(s) 198, 424, 532
HpyCH4V TGCA 4 cut(s) 243, 324, 662, 677
HpyF10VI GCNNNNNNNGC 3 cut(s) 321, 510, 686
HpyF3I CTNAG 2 cut(s) 362, 581
HpySE526I ACGT 3 cut(s) 198, 424, 532
Hsp92II CATG 5 cut(s) 98, 104, 315, 492, 792
Ksp22I TGATCA 2 cut(s) 463, 544
Kzo9I GATC 2 cut(s) 463, 544
LmnI GCTCC 1 cut(s) 440
Lsp1109I GCAGC 1 cut(s) 689
LweI GCATC 1 cut(s) 47
MabI ACCWGGT 1 cut(s) 433
MaeI CTAG 3 cut(s) 21, 35, 701
MaeII ACGT 3 cut(s) 198, 424, 532
MaeIII GTNAC 3 cut(s) 425, 703, 784
MalI GATC 2 cut(s) 465, 546
MboI GATC 2 cut(s) 463, 544
MboII GAAGA 4 cut(s) 96, 120, 295, 340
MhlI GDGCHC 1 cut(s) 445
MluCI AATT 1 cut(s) 272
MnlI CCTC 6 cut(s) 309, 347, 381, 399, 576, 749
MroXI GAANNNNTTC 1 cut(s) 198
MseI TTAA 2 cut(s) 183, 540
MslI CAYNNNNRTG 2 cut(s) 99, 487
MspI CCGG 2 cut(s) 89, 287
MspR9I CCNGG 3 cut(s) 287, 319, 435
Mva1269I GAATGC 1 cut(s) 552
MvaI CCWGG 2 cut(s) 319, 435
MwoI GCNNNNNNNGC 3 cut(s) 321, 510, 686
NciI CCSGG 1 cut(s) 287
NdeII GATC 2 cut(s) 463, 544
NlaIII CATG 5 cut(s) 98, 104, 315, 492, 792
NmuCI GTSAC 2 cut(s) 703, 784
PaeR7I CTCGAG 1 cut(s) 155
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PctI GAATGC 1 cut(s) 552
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 3 cut(s) 31, 176, 366
PinAI ACCGGT 1 cut(s) 88
PkrI GCNGC 1 cut(s) 679
PshAI GACNNNNGTC 1 cut(s) 150
Psp124BI GAGCTC 1 cut(s) 445
Psp1406I AACGTT 1 cut(s) 198
Psp6I CCWGG 2 cut(s) 317, 433
PspFI CCCAGC 1 cut(s) 171
PspGI CCWGG 2 cut(s) 317, 433
PspPI GGNCC 2 cut(s) 65, 91
RsaI GTAC 1 cut(s) 695
RsaNI GTAC 1 cut(s) 694
RseI CAYNNNNRTG 2 cut(s) 99, 487
SacI GAGCTC 1 cut(s) 445
SaqAI TTAA 2 cut(s) 183, 540
SatI GCNGC 1 cut(s) 678
Sau3AI GATC 2 cut(s) 463, 544
Sau96I GGNCC 2 cut(s) 65, 91
ScrFI CCNGG 3 cut(s) 287, 319, 435
SduI GDGCHC 1 cut(s) 445
SexAI ACCWGGT 1 cut(s) 433
SfaNI GCATC 1 cut(s) 47
SfcI CTRYAG 1 cut(s) 132
Sfr274I CTCGAG 1 cut(s) 155
SinI GGWCC 2 cut(s) 65, 91
SlaI CTCGAG 1 cut(s) 155
SmiMI CAYNNNNRTG 2 cut(s) 99, 487
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 1 cut(s) 272
SsiI CCGC 1 cut(s) 104
SspMI CTAG 3 cut(s) 21, 35, 701
SstI GAGCTC 1 cut(s) 445
StyD4I CCNGG 3 cut(s) 285, 317, 433
StyI CCWWGG 1 cut(s) 557
TaaI ACNGT 1 cut(s) 726
TaiI ACGT 3 cut(s) 201, 427, 535
TaqI TCGA 5 cut(s) 41, 156, 402, 762, 775
TaqII GACCGA 1 cut(s) 82
TasI AATT 1 cut(s) 272
TatI WGTACW 1 cut(s) 693
TfiI GAWTC 3 cut(s) 31, 176, 366
Tru1I TTAA 2 cut(s) 183, 540
Tru9I TTAA 2 cut(s) 183, 540
TscAI CASTG 2 cut(s) 585, 679
TseFI GTSAC 2 cut(s) 703, 784
TseI GCWGC 1 cut(s) 677
Tsp45I GTSAC 2 cut(s) 703, 784
TspDTI ATGAA 3 cut(s) 295, 300, 425
TspGWI ACGGA 2 cut(s) 192, 329
TspRI CASTG 2 cut(s) 585, 679
VpaK11BI GGWCC 2 cut(s) 65, 91
XhoI CTCGAG 1 cut(s) 155
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 3 cut(s) 21, 35, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.