Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009032

Physical Location & Seq

Genomic Coordinates Reverse (-)

24573983 .. 24576172

Gene Structure 2190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G259000.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGTGGAATTTTGCATCCAGCTGCATAGCTGGAAGTGTTGGATTAAAAAATGATTCTCTAAGGCCAACACAAGCTGCTTCTGAATGTTCTGATGATGAGGGTTCTTCTGTTGTTGGGAGAGAGGAAGGACTAGAGTGCCCCATATGCTGGGAGTCCTTCAACATTGTCGAAAATGTGCCCTACGTTTTATGGTGTGGCCATACCCTCTGTAAAAATTGCATTCTGGGACTGCAATGGGCTGTTGTGAAATTCCCCACTTTACCAATTCAGCTTCCGCTTTTTATCTCATGCCCATGGTGCAATCTCTTGTCCTTCCGGCTGGTTTACAGGGGAAATCTCAAATTCCCTCGCAAGAACTACTTTCTTCTTTGGATGGTTGAGAGTATGAATGGCGATAGGATTAAGTCTCATTCTACCTTCTCTGGTGATAATCACGCTGTCTGGCCAGCAAATGGAAATGCATCCGTGGGAAGTCAAGTGAGCCACACTCACCACCGGAGGGTACACCATATTCGCCATATCGAGCCATCGGGTCAGAATCATGTCCATGTCAATAATTACCTTAGTGTGGAGCGATTGCATTCTTCCCTTCGGAAGTCACTGTTTTTCTTCGTTCATTTGACAGCAAAGTTTCCACTGGTTGTGATATTTCTTCTGATCATCTTATATGTAATACCTGCCTGTGCAGCTATATTGGCTTTGTACATACTTGTCACGGTTGTGTTTGCTCTCCCATCGTTTCTTCTTCTGTACTTTGCATATCCAAGTTTGGATTGGCTTGTCAGGGAAATCATCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_UBOX

Protein Analysis

267

Amino Acids

30.14

Weight (kDa)

8.33

Isoelectric Point (pI)

48.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29270 AT3G29270
fragaria_vesca	FvH4_6g47511 FvH4_6g47511
malus_domestica	MD09G1061100.v1.1 MD17G1056500.v1.1
prunus_persica	Prupe.3G259000_v2.0.a1 Prupe.3G259000_v2.0.a1 Prupe.3G259000_v2.0.a1 Prupe.3G259000_v2.0.a1 Prupe.3G259000_v2.0.a1
pyrus_communis	pycom111g05160
rosa_chinensis	RchiOBHm_Chr2g0166551
rosa_laevigata	RLG00000021629
rosa_multiflora	Rmu_sc0010842.1_g000008
rosa_roxburghii	Rroxscaffold_2G00084770
rosa_rugosa	Rorug02G0524200
rosa_samantha	Rh2AG590100 Rh2BG602200 Rh2CG572900 Rh2DG612800
rosa_wichuraiana	Rw2G049190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	685
AccB7I	CCANNNNNTGG	2 cut(s)	147, 452
AciI	CCGC	1 cut(s)	275
AcoI	YGGCCR	2 cut(s)	196, 443
AcsI	RAATTY	3 cut(s)	7, 248, 341
AfaI	GTAC	3 cut(s)	504, 704, 752
AfiI	CCNNNNNNNGG	4 cut(s)	147, 452, 499, 568
AgsI	TTSAA	1 cut(s)	160
AleI	CACNNNNGTG	1 cut(s)	719
AluBI	AGCT	5 cut(s)	21, 29, 74, 271, 689
AluI	AGCT	5 cut(s)	21, 29, 74, 271, 689
Alw26I	GTCTC	1 cut(s)	411
AoxI	GGCC	3 cut(s)	62, 196, 443
ApeKI	GCWGC	3 cut(s)	21, 74, 686
ApoI	RAATTY	3 cut(s)	7, 248, 341
AsuHPI	GGTGA	3 cut(s)	437, 482, 787
BaeGI	GKGCMC	2 cut(s)	140, 180
BalI	TGGCCA	2 cut(s)	198, 445
BbvI	GCAGC	3 cut(s)	8, 61, 698
BccI	CCATC	3 cut(s)	367, 535, 742
BclI	TGATCA	1 cut(s)	657
BcoDI	GTCTC	1 cut(s)	411
BfaI	CTAG	1 cut(s)	131
BfuAI	ACCTGC	1 cut(s)	685
BisI	GCNGC	3 cut(s)	22, 75, 687
BlsI	GCNGC	3 cut(s)	23, 76, 688
BmsI	GCATC	2 cut(s)	23, 470
BplI	GAGNNNNNCTC	2 cut(s)	472, 504
BsaJI	CCNNGG	2 cut(s)	293, 465
BsaWI	WCCGGW	1 cut(s)	495
Bsc4I	CCNNNNNNNGG	4 cut(s)	147, 452, 499, 568
Bse1I	ACTGG	1 cut(s)	642
Bse3DI	GCAATG	1 cut(s)	239
BseDI	CCNNGG	2 cut(s)	293, 465
BseGI	GGATG	3 cut(s)	14, 378, 461
BseLI	CCNNNNNNNGG	4 cut(s)	147, 452, 499, 568
BseMI	GCAATG	1 cut(s)	239
BseNI	ACTGG	1 cut(s)	642
BseSI	GKGCMC	2 cut(s)	140, 180
BseXI	GCAGC	3 cut(s)	8, 61, 698
BseYI	CCCAGC	1 cut(s)	147
BsgI	GTGCAG	1 cut(s)	705
BshFI	GGCC	3 cut(s)	64, 198, 445
BsiSI	CCGG	2 cut(s)	316, 496
BslFI	GGGAC	1 cut(s)	240
BslI	CCNNNNNNNGG	4 cut(s)	147, 452, 499, 568
BsmAI	GTCTC	1 cut(s)	411
BsmFI	GGGAC	1 cut(s)	240
BsmI	GAATGC	2 cut(s)	219, 580
BsnI	GGCC	3 cut(s)	64, 198, 445
Bsp1286I	GDGCHC	2 cut(s)	140, 180
Bsp1407I	TGTACA	1 cut(s)	702
Bsp143I	GATC	1 cut(s)	657
Bsp19I	CCATGG	1 cut(s)	293
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	3 cut(s)	64, 198, 445
BspMI	ACCTGC	1 cut(s)	685
BsrDI	GCAATG	1 cut(s)	239
BsrGI	TGTACA	1 cut(s)	702
BsrI	ACTGG	1 cut(s)	642
BssECI	CCNNGG	2 cut(s)	293, 465
BssMI	GATC	1 cut(s)	657
BssT1I	CCWWGG	1 cut(s)	293
Bst4CI	ACNGT	2 cut(s)	603, 718
BstAUI	TGTACA	1 cut(s)	702
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	2 cut(s)	59, 563
BstDSI	CCRYGG	2 cut(s)	293, 465
BstF5I	GGATG	3 cut(s)	14, 378, 461
BstKTI	GATC	1 cut(s)	660
BstMAI	GTCTC	1 cut(s)	411
BstMBI	GATC	1 cut(s)	657
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 297, 686, 695
BstSLI	GKGCMC	2 cut(s)	140, 180
BstV1I	GCAGC	3 cut(s)	8, 61, 698
BsuRI	GGCC	3 cut(s)	64, 198, 445
BtgI	CCRYGG	2 cut(s)	293, 465
BtsCI	GGATG	3 cut(s)	14, 378, 461
BtsIMutI	CAGTG	2 cut(s)	599, 635
BveI	ACCTGC	1 cut(s)	685
Cac8I	GCNNGC	1 cut(s)	447
Csp6I	GTAC	3 cut(s)	503, 703, 751
CviAII	CATG	4 cut(s)	288, 294, 542, 548
CviQI	GTAC	3 cut(s)	503, 703, 751
DdeI	CTNAG	2 cut(s)	59, 563
DpnI	GATC	1 cut(s)	659
DpnII	GATC	1 cut(s)	657
EaeI	YGGCCR	2 cut(s)	196, 443
Eco130I	CCWWGG	1 cut(s)	293
EcoT14I	CCWWGG	1 cut(s)	293
EcoT22I	ATGCAT	1 cut(s)	463
ErhI	CCWWGG	1 cut(s)	293
FaeI	CATG	4 cut(s)	291, 297, 545, 551
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	4 cut(s)	287, 293, 541, 547
FauNDI	CATATG	1 cut(s)	143
FbaI	TGATCA	1 cut(s)	657
Fnu4HI	GCNGC	3 cut(s)	22, 75, 687
FokI	GGATG	2 cut(s)	385, 448
Fsp4HI	GCNGC	3 cut(s)	22, 75, 687
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	3 cut(s)	22, 75, 687
GsaI	CCCAGC	1 cut(s)	151
HaeIII	GGCC	3 cut(s)	64, 198, 445
HapII	CCGG	2 cut(s)	316, 496
Hin1II	CATG	4 cut(s)	291, 297, 545, 551
HinfI	GANTC	3 cut(s)	53, 152, 538
HpaII	CCGG	2 cut(s)	316, 496
HphI	GGTGA	3 cut(s)	437, 482, 787
Hpy166II	GTNNAC	2 cut(s)	325, 505
Hpy188I	TCNGA	5 cut(s)	82, 91, 537, 594, 657
Hpy8I	GTNNAC	2 cut(s)	325, 505
HpyAV	CCTTC	5 cut(s)	119, 166, 322, 427, 599
HpyCH4III	ACNGT	2 cut(s)	603, 718
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	9 cut(s)	14, 24, 219, 232, 300, 461, 580, 686, 758
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 297, 686, 695
HpyF3I	CTNAG	2 cut(s)	59, 563
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	4 cut(s)	291, 297, 545, 551
Ksp22I	TGATCA	1 cut(s)	657
Kzo9I	GATC	1 cut(s)	657
LmnI	GCTCC	1 cut(s)	571
Lsp1109I	GCAGC	3 cut(s)	8, 61, 698
LweI	GCATC	2 cut(s)	23, 470
MaeI	CTAG	1 cut(s)	131
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	2 cut(s)	597, 712
MalI	GATC	1 cut(s)	659
MboI	GATC	1 cut(s)	657
MboII	GAAGA	7 cut(s)	96, 356, 576, 601, 644, 734, 737
MhlI	GDGCHC	2 cut(s)	140, 180
MlsI	TGGCCA	2 cut(s)	198, 445
MluCI	AATT	6 cut(s)	7, 214, 248, 264, 341, 556
MluNI	TGGCCA	2 cut(s)	198, 445
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	1 cut(s)	19
MnlI	CCTC	5 cut(s)	91, 115, 215, 357, 492
Mox20I	TGGCCA	2 cut(s)	198, 445
Mph1103I	ATGCAT	1 cut(s)	463
MscI	TGGCCA	2 cut(s)	198, 445
MseI	TTAA	2 cut(s)	44, 402
MslI	CAYNNNNRTG	3 cut(s)	292, 546, 719
Msp20I	TGGCCA	2 cut(s)	198, 445
MspA1I	CMGCKG	1 cut(s)	21
MspI	CCGG	2 cut(s)	316, 496
Mva1269I	GAATGC	2 cut(s)	219, 580
MwoI	GCNNNNNNNGC	4 cut(s)	144, 297, 686, 695
NcoI	CCATGG	1 cut(s)	293
NdeI	CATATG	1 cut(s)	143
NdeII	GATC	1 cut(s)	657
NlaIII	CATG	4 cut(s)	291, 297, 545, 551
NmuCI	GTSAC	2 cut(s)	597, 712
NsiI	ATGCAT	1 cut(s)	463
OliI	CACNNNNGTG	1 cut(s)	719
PctI	GAATGC	2 cut(s)	219, 580
PfeI	GAWTC	2 cut(s)	53, 538
PflMI	CCANNNNNTGG	2 cut(s)	147, 452
PkrI	GCNGC	3 cut(s)	23, 76, 688
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PspFI	CCCAGC	1 cut(s)	147
PvuII	CAGCTG	1 cut(s)	21
RsaI	GTAC	3 cut(s)	504, 704, 752
RsaNI	GTAC	3 cut(s)	503, 703, 751
RseI	CAYNNNNRTG	3 cut(s)	292, 546, 719
SaqAI	TTAA	2 cut(s)	44, 402
SatI	GCNGC	3 cut(s)	22, 75, 687
Sau3AI	GATC	1 cut(s)	657
SchI	GAGTC	1 cut(s)	161
SduI	GDGCHC	2 cut(s)	140, 180
SfaNI	GCATC	2 cut(s)	23, 470
SmiMI	CAYNNNNRTG	3 cut(s)	292, 546, 719
Sse9I	AATT	6 cut(s)	7, 214, 248, 264, 341, 556
SsiI	CCGC	1 cut(s)	275
SspMI	CTAG	1 cut(s)	131
StyI	CCWWGG	1 cut(s)	293
TaaI	ACNGT	2 cut(s)	603, 718
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	2 cut(s)	168, 522
TasI	AATT	6 cut(s)	7, 214, 248, 264, 341, 556
TatI	WGTACW	2 cut(s)	702, 750
TfiI	GAWTC	2 cut(s)	53, 538
Tru1I	TTAA	2 cut(s)	44, 402
Tru9I	TTAA	2 cut(s)	44, 402
TscAI	CASTG	2 cut(s)	606, 642
TseFI	GTSAC	2 cut(s)	597, 712
TseI	GCWGC	3 cut(s)	21, 74, 686
Tsp45I	GTSAC	2 cut(s)	597, 712
TspDTI	ATGAA	2 cut(s)	401, 605
TspGWI	ACGGA	1 cut(s)	454
TspRI	CASTG	2 cut(s)	606, 642
Van91I	CCANNNNNTGG	2 cut(s)	147, 452
XapI	RAATTY	3 cut(s)	7, 248, 341
XcmI	CCANNNNNNNNNTGG	1 cut(s)	771
XspI	CTAG	1 cut(s)	131
Zsp2I	ATGCAT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.