Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009032

Physical Location & Seq

Genomic Coordinates Reverse (-)

76859960 .. 76860760

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021629

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGTGGAATTTTGCATCCAGTTGCATAGCTGGAAATGTTGGAATGAAAAATGACTTTCTAAGGCCAACACAAGCTACTTCTGAATGCTGCTCCGATGATGAGGGTTCTTCTGGTGTCGGCAGAGAGGAAGGACTAGAGTGCCCCATTTGCTGGGAATCTTTCAATATTGTTGAAAATGTGCCCTATGTTTTATGGTGTGGTCATACCCTCTGTAAAAATTGCATTCTGGGTCTGCAATGGGCTGTTGTCAAGTTCCCCACCCTACCAATTCAGCTTCCGCTATTTATCTCCTGCCCATGGTGCAATCTGTTATCCTTCCGGCTGGTTTACAGGGGAAATCTCAAATTTCCTCGCAAGAACTACTTTCTTTTGTGGATGGTTGAAAGCATGAATGGTGATAGAGTGAAGTCTCATTCTACCTGCTCTGGTGATAATCAACCAGCCTGGCCGGTAAATGGAAATGGATCCGCAGGAAGTCAACTGAACCATAGGAGGGGACATTATATTCGCCATCCCGAGCCACCAGGGACAAATCATAATCATGGCGTCGTCAATAATTACCTTAGTATGGAGCGATTGCATTCTTCTCTTCGGAAGTCACTGTTTTTCTTCGTTCATTTGACAGCAAAGTTCCCTTTGGTTGTCATATTTCTTCTGATCATCTTATATGCAATACCAGCCAGTGCAGCCATATTGGCCTTGTACATACTTATCACGGTGCTGTTTGCTCTCCCGTCGTTTCTTATCTTGTACTTTGCATATCCTAGTTTGGATTGGCTTGTGAGAGAAATCATCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_UBOX

Protein Analysis

267

Amino Acids

30.06

Weight (kDa)

8.28

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_5	PF14634	46 - 101	1.4e-06	zinc-RING finger domain
zf-RING_UBOX	PF13445	47 - 80	5.9e-09	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29270 AT3G29270
fragaria_vesca	FvH4_6g47511 FvH4_6g47511
malus_domestica	MD09G1061100.v1.1 MD17G1056500.v1.1
prunus_persica	Prupe.3G259000_v2.0.a1 Prupe.3G259000_v2.0.a1 Prupe.3G259000_v2.0.a1 Prupe.3G259000_v2.0.a1 Prupe.3G259000_v2.0.a1
pyrus_communis	pycom111g05160
rosa_chinensis	RchiOBHm_Chr2g0166551
rosa_laevigata	RLG00000021629
rosa_multiflora	Rmu_sc0010842.1_g000008
rosa_roxburghii	Rroxscaffold_2G00084770
rosa_rugosa	Rorug02G0524200
rosa_samantha	Rh2AG590100 Rh2BG602200 Rh2CG572900 Rh2DG612800
rosa_wichuraiana	Rw2G049190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	428
AccB7I	CCANNNNNTGG	1 cut(s)	150
AciI	CCGC	2 cut(s)	278, 468
AclWI	GGATC	2 cut(s)	459, 472
AcoI	YGGCCR	1 cut(s)	446
AcsI	RAATTY	2 cut(s)	7, 344
AcyI	GRCGYC	1 cut(s)	546
AfaI	GTAC	2 cut(s)	704, 752
AfiI	CCNNNNNNNGG	5 cut(s)	150, 297, 455, 493, 568
AgsI	TTSAA	3 cut(s)	163, 173, 383
AjnI	CCWGG	2 cut(s)	443, 523
AluBI	AGCT	3 cut(s)	29, 74, 274
AluI	AGCT	3 cut(s)	29, 74, 274
Alw26I	GTCTC	1 cut(s)	414
AlwI	GGATC	2 cut(s)	459, 472
Ama87I	CYCGRG	1 cut(s)	515
AoxI	GGCC	3 cut(s)	62, 446, 696
ApeKI	GCWGC	2 cut(s)	87, 686
ApoI	RAATTY	2 cut(s)	7, 344
ArsI	GACNNNNNNTTYG	2 cut(s)	489, 521
AsuHPI	GGTGA	3 cut(s)	407, 440, 787
AvaI	CYCGRG	1 cut(s)	515
BaeGI	GKGCMC	2 cut(s)	143, 183
BamHI	GGATCC	1 cut(s)	464
BbvI	GCAGC	2 cut(s)	74, 698
BccI	CCATC	2 cut(s)	370, 519
BciT130I	CCWGG	2 cut(s)	445, 525
BclI	TGATCA	1 cut(s)	657
BcoDI	GTCTC	1 cut(s)	414
BfaI	CTAG	2 cut(s)	134, 765
BfuAI	ACCTGC	1 cut(s)	428
BglI	GCCNNNNNGGC	1 cut(s)	695
BisI	GCNGC	2 cut(s)	88, 687
BlsI	GCNGC	2 cut(s)	89, 688
Bme1390I	CCNGG	2 cut(s)	445, 525
BmeT110I	CYCGRG	1 cut(s)	515
BmiI	GGNNCC	1 cut(s)	466
BmrFI	CCNGG	2 cut(s)	445, 525
BmsI	GCATC	1 cut(s)	23
BsaHI	GRCGYC	1 cut(s)	546
BsaJI	CCNNGG	2 cut(s)	296, 524
Bsc4I	CCNNNNNNNGG	5 cut(s)	150, 297, 455, 493, 568
Bse118I	RCCGGY	1 cut(s)	448
Bse1I	ACTGG	2 cut(s)	18, 681
Bse3DI	GCAATG	1 cut(s)	242
BseBI	CCWGG	2 cut(s)	445, 525
BseDI	CCNNGG	2 cut(s)	296, 524
BseGI	GGATG	3 cut(s)	14, 381, 511
BseLI	CCNNNNNNNGG	5 cut(s)	150, 297, 455, 493, 568
BseMI	GCAATG	1 cut(s)	242
BseNI	ACTGG	2 cut(s)	18, 681
BseSI	GKGCMC	2 cut(s)	143, 183
BseXI	GCAGC	2 cut(s)	74, 698
BseYI	CCCAGC	1 cut(s)	150
BsgI	GTGCAG	1 cut(s)	705
BshFI	GGCC	3 cut(s)	64, 448, 698
BsiHKCI	CYCGRG	1 cut(s)	515
BsiSI	CCGG	2 cut(s)	319, 449
BslFI	GGGAC	2 cut(s)	510, 541
BslI	CCNNNNNNNGG	5 cut(s)	150, 297, 455, 493, 568
BsmAI	GTCTC	1 cut(s)	414
BsmFI	GGGAC	2 cut(s)	510, 541
BsmI	GAATGC	3 cut(s)	89, 222, 580
BsnI	GGCC	3 cut(s)	64, 448, 698
BsoBI	CYCGRG	1 cut(s)	515
Bsp1286I	GDGCHC	2 cut(s)	143, 183
Bsp1407I	TGTACA	1 cut(s)	702
Bsp143I	GATC	2 cut(s)	464, 657
Bsp19I	CCATGG	1 cut(s)	296
BspACI	CCGC	2 cut(s)	278, 468
BspANI	GGCC	3 cut(s)	64, 448, 698
BspLI	GGNNCC	1 cut(s)	466
BspMI	ACCTGC	1 cut(s)	428
BspPI	GGATC	2 cut(s)	459, 472
BsrDI	GCAATG	1 cut(s)	242
BsrFI	RCCGGY	1 cut(s)	448
BsrGI	TGTACA	1 cut(s)	702
BsrI	ACTGG	2 cut(s)	18, 681
BssAI	RCCGGY	1 cut(s)	448
BssECI	CCNNGG	2 cut(s)	296, 524
BssMI	GATC	2 cut(s)	464, 657
BssNI	GRCGYC	1 cut(s)	546
BssT1I	CCWWGG	1 cut(s)	296
Bst2UI	CCWGG	2 cut(s)	445, 525
Bst4CI	ACNGT	2 cut(s)	603, 718
Bst6I	CTCTTC	1 cut(s)	594
BstACI	GRCGYC	1 cut(s)	546
BstAUI	TGTACA	1 cut(s)	702
BstDEI	CTNAG	2 cut(s)	59, 563
BstDSI	CCRYGG	1 cut(s)	296
BstF5I	GGATG	3 cut(s)	14, 381, 511
BstKTI	GATC	2 cut(s)	467, 660
BstMAI	GTCTC	1 cut(s)	414
BstMBI	GATC	2 cut(s)	464, 657
BstMWI	GCNNNNNNNGC	5 cut(s)	147, 300, 677, 686, 695
BstNI	CCWGG	2 cut(s)	445, 525
BstSCI	CCNGG	2 cut(s)	443, 523
BstSLI	GKGCMC	2 cut(s)	143, 183
BstV1I	GCAGC	2 cut(s)	74, 698
BstX2I	RGATCY	1 cut(s)	464
BstYI	RGATCY	1 cut(s)	464
BsuRI	GGCC	3 cut(s)	64, 448, 698
BtgI	CCRYGG	1 cut(s)	296
BtsCI	GGATG	3 cut(s)	14, 381, 511
BtsIMutI	CAGTG	2 cut(s)	599, 688
BveI	ACCTGC	1 cut(s)	428
Cfr10I	RCCGGY	1 cut(s)	448
CseI	GACGC	1 cut(s)	535
Csp6I	GTAC	2 cut(s)	703, 751
CviAII	CATG	3 cut(s)	297, 388, 542
CviQI	GTAC	2 cut(s)	703, 751
DdeI	CTNAG	2 cut(s)	59, 563
DpnI	GATC	2 cut(s)	466, 659
DpnII	GATC	2 cut(s)	464, 657
EaeI	YGGCCR	1 cut(s)	446
Eam1104I	CTCTTC	1 cut(s)	594
EarI	CTCTTC	1 cut(s)	594
Eco130I	CCWWGG	1 cut(s)	296
Eco88I	CYCGRG	1 cut(s)	515
EcoRII	CCWGG	2 cut(s)	443, 523
EcoT14I	CCWWGG	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	296
FaeI	CATG	3 cut(s)	300, 391, 545
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FaqI	GGGAC	2 cut(s)	510, 541
FatI	CATG	3 cut(s)	296, 387, 541
FbaI	TGATCA	1 cut(s)	657
Fnu4HI	GCNGC	2 cut(s)	88, 687
FokI	GGATG	2 cut(s)	388, 498
Fsp4HI	GCNGC	2 cut(s)	88, 687
FspBI	CTAG	2 cut(s)	134, 765
GluI	GCNGC	2 cut(s)	88, 687
GsaI	CCCAGC	1 cut(s)	154
HaeIII	GGCC	3 cut(s)	64, 448, 698
HapII	CCGG	2 cut(s)	319, 449
HgaI	GACGC	1 cut(s)	535
Hin1I	GRCGYC	1 cut(s)	546
Hin1II	CATG	3 cut(s)	300, 391, 545
HincII	GTYRAC	1 cut(s)	479
HindII	GTYRAC	1 cut(s)	479
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	2 cut(s)	319, 449
HphI	GGTGA	3 cut(s)	407, 440, 787
Hpy166II	GTNNAC	2 cut(s)	328, 479
Hpy188I	TCNGA	4 cut(s)	82, 94, 594, 657
Hpy188III	TCNNGA	1 cut(s)	515
Hpy8I	GTNNAC	2 cut(s)	328, 479
Hpy99I	CGWCG	2 cut(s)	551, 739
HpyAV	CCTTC	2 cut(s)	122, 325
HpyCH4III	ACNGT	2 cut(s)	603, 718
HpyCH4V	TGCA	9 cut(s)	14, 24, 222, 235, 303, 580, 671, 686, 758
HpyF10VI	GCNNNNNNNGC	5 cut(s)	147, 300, 677, 686, 695
HpyF3I	CTNAG	2 cut(s)	59, 563
Hsp92I	GRCGYC	1 cut(s)	546
Hsp92II	CATG	3 cut(s)	300, 391, 545
Ksp22I	TGATCA	1 cut(s)	657
Kzo9I	GATC	2 cut(s)	464, 657
LmnI	GCTCC	2 cut(s)	95, 571
Lsp1109I	GCAGC	2 cut(s)	74, 698
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	2 cut(s)	134, 765
MaeIII	GTNAC	1 cut(s)	597
MalI	GATC	2 cut(s)	466, 659
MboI	GATC	2 cut(s)	464, 657
MboII	GAAGA	5 cut(s)	99, 576, 581, 601, 644
MflI	RGATCY	1 cut(s)	464
MhlI	GDGCHC	2 cut(s)	143, 183
MluCI	AATT	5 cut(s)	7, 217, 267, 344, 556
MmeI	TCCRAC	1 cut(s)	19
MnlI	CCTC	5 cut(s)	94, 118, 218, 360, 486
MslI	CAYNNNNRTG	1 cut(s)	540
MspI	CCGG	2 cut(s)	319, 449
MspR9I	CCNGG	2 cut(s)	445, 525
Mva1269I	GAATGC	3 cut(s)	89, 222, 580
MvaI	CCWGG	2 cut(s)	445, 525
MwoI	GCNNNNNNNGC	5 cut(s)	147, 300, 677, 686, 695
NcoI	CCATGG	1 cut(s)	296
NdeII	GATC	2 cut(s)	464, 657
NlaIII	CATG	3 cut(s)	300, 391, 545
NlaIV	GGNNCC	1 cut(s)	466
NmuCI	GTSAC	1 cut(s)	597
PctI	GAATGC	3 cut(s)	89, 222, 580
PfeI	GAWTC	1 cut(s)	155
PflMI	CCANNNNNTGG	1 cut(s)	150
PkrI	GCNGC	2 cut(s)	89, 688
Psp6I	CCWGG	2 cut(s)	443, 523
PspFI	CCCAGC	1 cut(s)	150
PspGI	CCWGG	2 cut(s)	443, 523
PspN4I	GGNNCC	1 cut(s)	466
PsuI	RGATCY	1 cut(s)	464
RsaI	GTAC	2 cut(s)	704, 752
RsaNI	GTAC	2 cut(s)	703, 751
RseI	CAYNNNNRTG	1 cut(s)	540
SatI	GCNGC	2 cut(s)	88, 687
Sau3AI	GATC	2 cut(s)	464, 657
ScrFI	CCNGG	2 cut(s)	445, 525
SduI	GDGCHC	2 cut(s)	143, 183
SetI	ASST	6 cut(s)	31, 76, 276, 422, 564, 800
SfaNI	GCATC	1 cut(s)	23
SmiMI	CAYNNNNRTG	1 cut(s)	540
Sse9I	AATT	5 cut(s)	7, 217, 267, 344, 556
SsiI	CCGC	2 cut(s)	278, 468
SspI	AATATT	1 cut(s)	166
SspMI	CTAG	2 cut(s)	134, 765
StyD4I	CCNGG	2 cut(s)	443, 523
StyI	CCWWGG	1 cut(s)	296
TaaI	ACNGT	2 cut(s)	603, 718
TasI	AATT	5 cut(s)	7, 217, 267, 344, 556
TatI	WGTACW	2 cut(s)	702, 750
TfiI	GAWTC	1 cut(s)	155
TscAI	CASTG	2 cut(s)	606, 688
TseFI	GTSAC	1 cut(s)	597
TseI	GCWGC	2 cut(s)	87, 686
Tsp45I	GTSAC	1 cut(s)	597
TspDTI	ATGAA	3 cut(s)	59, 404, 605
TspRI	CASTG	2 cut(s)	606, 688
Van91I	CCANNNNNTGG	1 cut(s)	150
XapI	RAATTY	2 cut(s)	7, 344
XspI	CTAG	2 cut(s)	134, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.