Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009032

Physical Location & Seq

Genomic Coordinates Reverse (-)

35972509 .. 35974677

Gene Structure 2169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g47511.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGTGGAATTTTGCATCCAATTGCATAGCTGGAAATGTTGGACTGAAAAATGACTCTCTAAGGCCAACACAAGTAACTCCTGACTGCTGCTCCGATGATGAGGGTTCTTCTGGTGTTGGCAGAGAGGAAGGACTGGAGTGCCCTATATGCTGGGAATCTTTCAACATCGTTGAAAATGTGCCATACGTTTTATGGTGCGGCCATACGCTCTGTAAAAATTGCATTCTGGGTCTGCAATGGGCTGTTGTCAAGTTCCCCACCCTACCAATTCAGCTTCCACTATTTATTTCCTGCCCATGGTGCAATCTGTTATCCTTCCGGCTGGTTTACAGGGGACTCCTGAAATTTCCTCGTAAGAACTACTTTCTTCTGTGGATGGTTGAAAGCATGAATGGTGACAGAGTGAAGTCTCATTCTACCGGCTCCGGTGATAATCAACCAGCCTGGCCAGTAAATGGAAATACATCCACTGGAAGTCAACTGAACCACAGGAGGGGACAATGTGTTCGTCATCCTGAGCCACCAGGGTCAAATCATAACCATGGCATTGTGAATAATTACCTCAATATGGAGCGACTGCATTCTTCCCTCCGAAAGTCGCTGTTTTTCTTCGTTCATTTGACAGCAAAGTTCCCACTGGTTGTCATATTTCTTCTGATCATCTTATATGCAATACCAGCCAGTGCAGCCATATTGGCCTTGTACATACTTATCACGGTGCTGTTTGCTCTCCCGTCATTTCTTATTTTGTACTTTGCATATCCTAGTTTGGATTGGCTTGTGAGGGAAATCATCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_UBOX

Protein Analysis

267

Amino Acids

30.0

Weight (kDa)

8.29

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_5	PF14634	46 - 101	1.4e-06	zinc-RING finger domain
zf-RING_UBOX	PF13445	47 - 80	5.9e-09	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29270 AT3G29270
fragaria_vesca	FvH4_6g47511 FvH4_6g47511
malus_domestica	MD09G1061100.v1.1 MD17G1056500.v1.1
prunus_persica	Prupe.3G259000_v2.0.a1 Prupe.3G259000_v2.0.a1 Prupe.3G259000_v2.0.a1 Prupe.3G259000_v2.0.a1 Prupe.3G259000_v2.0.a1
pyrus_communis	pycom111g05160
rosa_chinensis	RchiOBHm_Chr2g0166551
rosa_laevigata	RLG00000021629
rosa_multiflora	Rmu_sc0010842.1_g000008
rosa_roxburghii	Rroxscaffold_2G00084770
rosa_rugosa	Rorug02G0524200
rosa_samantha	Rh2AG590100 Rh2BG602200 Rh2CG572900 Rh2DG612800
rosa_wichuraiana	Rw2G049190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	455
AciI	CCGC	1 cut(s)	198
AcoI	YGGCCR	2 cut(s)	199, 446
AcsI	RAATTY	2 cut(s)	7, 344
AfaI	GTAC	2 cut(s)	704, 752
AfiI	CCNNNNNNNGG	4 cut(s)	297, 455, 493, 568
AgsI	TTSAA	3 cut(s)	163, 173, 383
AjnI	CCWGG	2 cut(s)	443, 523
AloI	GAACNNNNNNTCC	2 cut(s)	489, 521
AluBI	AGCT	2 cut(s)	29, 274
AluI	AGCT	2 cut(s)	29, 274
Alw26I	GTCTC	1 cut(s)	414
AoxI	GGCC	4 cut(s)	62, 199, 446, 696
ApeKI	GCWGC	2 cut(s)	87, 686
ApoI	RAATTY	2 cut(s)	7, 344
ArsI	GACNNNNNNTTYG	2 cut(s)	489, 521
AsuHPI	GGTGA	3 cut(s)	407, 440, 787
BaeGI	GKGCMC	1 cut(s)	143
BalI	TGGCCA	1 cut(s)	448
BbvI	GCAGC	2 cut(s)	74, 698
BccI	CCATC	1 cut(s)	370
BciT130I	CCWGG	2 cut(s)	445, 525
BclI	TGATCA	1 cut(s)	657
BcoDI	GTCTC	1 cut(s)	414
BfaI	CTAG	1 cut(s)	765
BglI	GCCNNNNNGGC	1 cut(s)	695
BisI	GCNGC	3 cut(s)	88, 199, 687
BlsI	GCNGC	3 cut(s)	89, 200, 688
Bme1390I	CCNGG	2 cut(s)	445, 525
BmiI	GGNNCC	1 cut(s)	424
BmrFI	CCNGG	2 cut(s)	445, 525
BmsI	GCATC	1 cut(s)	23
BpmI	CTGGAG	1 cut(s)	155
Bpu10I	CCTNAGC	1 cut(s)	516
BsaJI	CCNNGG	3 cut(s)	296, 524, 541
BsaWI	WCCGGW	1 cut(s)	425
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	4 cut(s)	297, 455, 493, 568
Bse118I	RCCGGY	1 cut(s)	419
Bse1I	ACTGG	5 cut(s)	138, 449, 475, 642, 681
Bse3DI	GCAATG	1 cut(s)	242
BseBI	CCWGG	2 cut(s)	445, 525
BseDI	CCNNGG	3 cut(s)	296, 524, 541
BseGI	GGATG	4 cut(s)	14, 381, 464, 511
BseLI	CCNNNNNNNGG	4 cut(s)	297, 455, 493, 568
BseMI	GCAATG	1 cut(s)	242
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	5 cut(s)	138, 449, 475, 642, 681
BseSI	GKGCMC	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	74, 698
BseYI	CCCAGC	1 cut(s)	150
BsgI	GTGCAG	1 cut(s)	705
BshFI	GGCC	4 cut(s)	64, 201, 448, 698
BsiSI	CCGG	3 cut(s)	319, 420, 426
BslFI	GGGAC	2 cut(s)	348, 510
BslI	CCNNNNNNNGG	4 cut(s)	297, 455, 493, 568
BsmAI	GTCTC	1 cut(s)	414
BsmFI	GGGAC	2 cut(s)	348, 510
BsmI	GAATGC	2 cut(s)	222, 580
BsnI	GGCC	4 cut(s)	64, 201, 448, 698
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp1407I	TGTACA	1 cut(s)	702
Bsp143I	GATC	1 cut(s)	657
Bsp19I	CCATGG	2 cut(s)	296, 541
BspACI	CCGC	1 cut(s)	198
BspANI	GGCC	4 cut(s)	64, 201, 448, 698
BspCNI	CTCAG	1 cut(s)	508
BspLI	GGNNCC	1 cut(s)	424
BsrDI	GCAATG	1 cut(s)	242
BsrFI	RCCGGY	1 cut(s)	419
BsrGI	TGTACA	1 cut(s)	702
BsrI	ACTGG	5 cut(s)	138, 449, 475, 642, 681
BssAI	RCCGGY	1 cut(s)	419
BssECI	CCNNGG	3 cut(s)	296, 524, 541
BssMI	GATC	1 cut(s)	657
BssT1I	CCWWGG	2 cut(s)	296, 541
Bst2UI	CCWGG	2 cut(s)	445, 525
Bst4CI	ACNGT	1 cut(s)	718
BstAUI	TGTACA	1 cut(s)	702
BstDEI	CTNAG	2 cut(s)	59, 516
BstDSI	CCRYGG	2 cut(s)	296, 541
BstF5I	GGATG	4 cut(s)	14, 381, 464, 511
BstKTI	GATC	1 cut(s)	660
BstMAI	GTCTC	1 cut(s)	414
BstMBI	GATC	1 cut(s)	657
BstMWI	GCNNNNNNNGC	5 cut(s)	147, 300, 677, 686, 695
BstNI	CCWGG	2 cut(s)	445, 525
BstSCI	CCNGG	2 cut(s)	443, 523
BstSLI	GKGCMC	1 cut(s)	143
BstV1I	GCAGC	2 cut(s)	74, 698
BsuRI	GGCC	4 cut(s)	64, 201, 448, 698
BtgI	CCRYGG	2 cut(s)	296, 541
BtsCI	GGATG	4 cut(s)	14, 381, 464, 511
BtsIMutI	CAGTG	3 cut(s)	468, 635, 688
Cfr10I	RCCGGY	1 cut(s)	419
Csp6I	GTAC	2 cut(s)	703, 751
CviAII	CATG	3 cut(s)	297, 388, 542
CviQI	GTAC	2 cut(s)	703, 751
DdeI	CTNAG	2 cut(s)	59, 516
DpnI	GATC	1 cut(s)	659
DpnII	GATC	1 cut(s)	657
EaeI	YGGCCR	2 cut(s)	199, 446
Eco130I	CCWWGG	2 cut(s)	296, 541
EcoRII	CCWGG	2 cut(s)	443, 523
EcoT14I	CCWWGG	2 cut(s)	296, 541
ErhI	CCWWGG	2 cut(s)	296, 541
FaeI	CATG	3 cut(s)	300, 391, 545
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FaqI	GGGAC	2 cut(s)	348, 510
FatI	CATG	3 cut(s)	296, 387, 541
FbaI	TGATCA	1 cut(s)	657
Fnu4HI	GCNGC	3 cut(s)	88, 199, 687
FokI	GGATG	3 cut(s)	388, 451, 498
Fsp4HI	GCNGC	3 cut(s)	88, 199, 687
FspBI	CTAG	1 cut(s)	765
GluI	GCNGC	3 cut(s)	88, 199, 687
GsaI	CCCAGC	1 cut(s)	154
GsuI	CTGGAG	1 cut(s)	155
HaeIII	GGCC	4 cut(s)	64, 201, 448, 698
HapII	CCGG	3 cut(s)	319, 420, 426
Hin1II	CATG	3 cut(s)	300, 391, 545
HincII	GTYRAC	1 cut(s)	479
HindII	GTYRAC	1 cut(s)	479
HinfI	GANTC	3 cut(s)	53, 155, 336
HpaII	CCGG	3 cut(s)	319, 420, 426
HphI	GGTGA	3 cut(s)	407, 440, 787
Hpy166II	GTNNAC	2 cut(s)	328, 479
Hpy188I	TCNGA	3 cut(s)	94, 593, 657
Hpy188III	TCNNGA	3 cut(s)	80, 340, 515
Hpy8I	GTNNAC	2 cut(s)	328, 479
HpyAV	CCTTC	2 cut(s)	122, 325
HpyCH4III	ACNGT	1 cut(s)	718
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	9 cut(s)	14, 24, 222, 235, 303, 580, 671, 686, 758
HpyF10VI	GCNNNNNNNGC	5 cut(s)	147, 300, 677, 686, 695
HpyF3I	CTNAG	2 cut(s)	59, 516
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	3 cut(s)	300, 391, 545
Ksp22I	TGATCA	1 cut(s)	657
Kzo9I	GATC	1 cut(s)	657
LmnI	GCTCC	3 cut(s)	95, 428, 571
Lsp1109I	GCAGC	2 cut(s)	74, 698
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	765
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	2 cut(s)	73, 395
MalI	GATC	1 cut(s)	659
MboI	GATC	1 cut(s)	657
MboII	GAAGA	5 cut(s)	99, 359, 576, 601, 644
MfeI	CAATTG	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	143
MlsI	TGGCCA	1 cut(s)	448
MluCI	AATT	6 cut(s)	7, 19, 217, 267, 344, 556
MluNI	TGGCCA	1 cut(s)	448
MlyI	GAGTC	2 cut(s)	47, 330
MmeI	TCCRAC	1 cut(s)	19
MnlI	CCTC	7 cut(s)	94, 118, 360, 486, 572, 599, 777
Mox20I	TGGCCA	1 cut(s)	448
MscI	TGGCCA	1 cut(s)	448
MslI	CAYNNNNRTG	1 cut(s)	540
Msp20I	TGGCCA	1 cut(s)	448
MspI	CCGG	3 cut(s)	319, 420, 426
MspR9I	CCNGG	2 cut(s)	445, 525
MunI	CAATTG	1 cut(s)	19
Mva1269I	GAATGC	2 cut(s)	222, 580
MvaI	CCWGG	2 cut(s)	445, 525
MwoI	GCNNNNNNNGC	5 cut(s)	147, 300, 677, 686, 695
NcoI	CCATGG	2 cut(s)	296, 541
NdeII	GATC	1 cut(s)	657
NlaIII	CATG	3 cut(s)	300, 391, 545
NlaIV	GGNNCC	1 cut(s)	424
NmuCI	GTSAC	1 cut(s)	395
PctI	GAATGC	2 cut(s)	222, 580
PfeI	GAWTC	1 cut(s)	155
PflMI	CCANNNNNTGG	1 cut(s)	455
PkrI	GCNGC	3 cut(s)	89, 200, 688
PleI	GAGTC	2 cut(s)	47, 330
PpsI	GAGTC	2 cut(s)	47, 330
Psp6I	CCWGG	2 cut(s)	443, 523
PspFI	CCCAGC	1 cut(s)	150
PspGI	CCWGG	2 cut(s)	443, 523
PspN4I	GGNNCC	1 cut(s)	424
RsaI	GTAC	2 cut(s)	704, 752
RsaNI	GTAC	2 cut(s)	703, 751
RseI	CAYNNNNRTG	1 cut(s)	540
SatI	GCNGC	3 cut(s)	88, 199, 687
Sau3AI	GATC	1 cut(s)	657
SchI	GAGTC	2 cut(s)	47, 330
ScrFI	CCNGG	2 cut(s)	445, 525
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	5 cut(s)	31, 189, 276, 564, 800
SfaNI	GCATC	1 cut(s)	23
SmiMI	CAYNNNNRTG	1 cut(s)	540
Sse9I	AATT	6 cut(s)	7, 19, 217, 267, 344, 556
SsiI	CCGC	1 cut(s)	198
SspMI	CTAG	1 cut(s)	765
StyD4I	CCNGG	2 cut(s)	443, 523
StyI	CCWWGG	2 cut(s)	296, 541
TaaI	ACNGT	1 cut(s)	718
TaiI	ACGT	1 cut(s)	189
TasI	AATT	6 cut(s)	7, 19, 217, 267, 344, 556
TatI	WGTACW	2 cut(s)	702, 750
TauI	GCSGC	1 cut(s)	201
TfiI	GAWTC	1 cut(s)	155
TscAI	CASTG	3 cut(s)	475, 642, 688
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	2 cut(s)	87, 686
Tsp45I	GTSAC	1 cut(s)	395
TspDTI	ATGAA	2 cut(s)	404, 605
TspRI	CASTG	3 cut(s)	475, 642, 688
Van91I	CCANNNNNTGG	1 cut(s)	455
XapI	RAATTY	2 cut(s)	7, 344
XcmI	CCANNNNNNNNNTGG	1 cut(s)	189
XspI	CTAG	1 cut(s)	765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.