Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0009032

Physical Location & Seq

Genomic Coordinates Forward (+)

4473309 .. 4474976

Gene Structure 1668 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1056500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTGGAATTTTGCATCCAGCTGCATAGCTGGAAGTGTTGGATTGAAAAACGATCCTCTAAAGCCGACGCAAGCAGCTCTCGAATGTTCTGATGACGAGAGTTCTTCGGTTGTTGGCAGAGAGGAAGGACTAGAGTGCCCCATATGCTGGGAATCATTCAACATTGTTGAAAATGTGCCCTACGTTTTATGGTGTGGCCATACCCTCTGTAAGAATTGCATTCTGGGATTGCAATGGGCGGTTGTGAAATTCCCCACTTTACCGGTTCAGCTTCCGCTTTTTATCTCCTGCCCTTGGTGCAATCTATTGTCCTTCCGGCTCGTTTACAGGGGAAATCTCAGATTCCCTCGCAAGAACTACTTTCTTCTCTGGATGGTTGAGAGCATGAATGGTGATAGGGGGCCGAAATCTAGTTCTACCTTCTCTGGTGATAATCAGTCAGTCTGGCCGGCTAATGGAAATGTATCCGTCGGAACTCAAACGAGCCACGGTACCCACAGGAGGGGGCAACATATTCGCCATATTGAACAATCTGGGTCGAATCACAATCGTGGCCCTGTCAATAATTTCCTTAGTGTGGAGCGCTTGCATTCTTCGATTCGGAAGTCACTGTTTTTCTTCGTTCATTTGACAGCAAAGTTCCCACTGGTTGTCATATTTCTCCTGATCATCTTATACGTAATACCTGCCTGTGCAGCCATATTGGCATTGTACATAGTCATCACCGTCGTGTTTGCTCTCCCGTCATTTCTTCTTCTGTACTTTGCATATCCTAGTTTGGATTGGCTTGTCAGGGAAATCCTCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_UBOX

Protein Analysis

270

Amino Acids

30.27

Weight (kDa)

8.53

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_5	PF14634	45 - 100	1.2e-06	zinc-RING finger domain
zf-RING_UBOX	PF13445	46 - 79	6e-09	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29270 AT3G29270
fragaria_vesca	FvH4_6g47511 FvH4_6g47511
malus_domestica	MD09G1061100.v1.1 MD17G1056500.v1.1
prunus_persica	Prupe.3G259000_v2.0.a1 Prupe.3G259000_v2.0.a1 Prupe.3G259000_v2.0.a1 Prupe.3G259000_v2.0.a1 Prupe.3G259000_v2.0.a1
pyrus_communis	pycom111g05160
rosa_chinensis	RchiOBHm_Chr2g0166551
rosa_laevigata	RLG00000021629
rosa_multiflora	Rmu_sc0010842.1_g000008
rosa_roxburghii	Rroxscaffold_2G00084770
rosa_rugosa	Rorug02G0524200
rosa_samantha	Rh2AG590100 Rh2BG602200 Rh2CG572900 Rh2DG612800
rosa_wichuraiana	Rw2G049190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	694
Acc65I	GGTACC	1 cut(s)	491
AccB1I	GGYRCC	1 cut(s)	491
AccB7I	CCANNNNNTGG	1 cut(s)	147
AciI	CCGC	2 cut(s)	239, 275
AclWI	GGATC	1 cut(s)	47
AcoI	YGGCCR	2 cut(s)	196, 446
AcsI	RAATTY	2 cut(s)	7, 248
AfaI	GTAC	3 cut(s)	493, 713, 761
AfeI	AGCGCT	1 cut(s)	584
AfiI	CCNNNNNNNGG	6 cut(s)	147, 294, 455, 501, 502, 577
AgeI	ACCGGT	1 cut(s)	262
AgsI	TTSAA	4 cut(s)	46, 160, 170, 527
AleI	CACNNNNGTG	2 cut(s)	549, 728
AluBI	AGCT	4 cut(s)	21, 29, 77, 271
AluI	AGCT	4 cut(s)	21, 29, 77, 271
AlwI	GGATC	1 cut(s)	47
Aor51HI	AGCGCT	1 cut(s)	584
AoxI	GGCC	4 cut(s)	196, 401, 446, 553
ApeKI	GCWGC	3 cut(s)	21, 74, 695
ApoI	RAATTY	2 cut(s)	7, 248
AsiGI	ACCGGT	1 cut(s)	262
Asp718I	GGTACC	1 cut(s)	491
AspLEI	GCGC	1 cut(s)	585
AspS9I	GGNCC	2 cut(s)	401, 554
AsuHPI	GGTGA	4 cut(s)	404, 440, 715, 796
BaeGI	GKGCMC	2 cut(s)	140, 180
BalI	TGGCCA	1 cut(s)	198
BanI	GGYRCC	1 cut(s)	491
BbvI	GCAGC	3 cut(s)	8, 86, 707
BccI	CCATC	1 cut(s)	367
BcgI	CGANNNNNNTGC	2 cut(s)	497, 531
BciVI	GTATCC	1 cut(s)	475
BclI	TGATCA	1 cut(s)	666
BfaI	CTAG	3 cut(s)	131, 411, 774
BfoI	RGCGCY	1 cut(s)	586
BfuAI	ACCTGC	1 cut(s)	694
BfuI	GTATCC	1 cut(s)	475
BglI	GCCNNNNNGGC	1 cut(s)	704
BisI	GCNGC	3 cut(s)	22, 75, 696
BlsI	GCNGC	3 cut(s)	23, 76, 697
BmgT120I	GGNCC	2 cut(s)	401, 554
BmiI	GGNNCC	2 cut(s)	402, 493
BmsI	GCATC	1 cut(s)	23
BsaAI	YACGTR	1 cut(s)	679
BsaJI	CCNNGG	2 cut(s)	293, 487
BsaWI	WCCGGW	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	6 cut(s)	147, 294, 455, 501, 502, 577
Bse118I	RCCGGY	2 cut(s)	262, 448
Bse1I	ACTGG	1 cut(s)	651
Bse3DI	GCAATG	1 cut(s)	239
BseDI	CCNNGG	2 cut(s)	293, 487
BseGI	GGATG	2 cut(s)	14, 378
BseLI	CCNNNNNNNGG	6 cut(s)	147, 294, 455, 501, 502, 577
BseMI	GCAATG	1 cut(s)	239
BseMII	CTCAG	1 cut(s)	352
BseNI	ACTGG	1 cut(s)	651
BseSI	GKGCMC	2 cut(s)	140, 180
BseXI	GCAGC	3 cut(s)	8, 86, 707
BseYI	CCCAGC	1 cut(s)	147
BsgI	GTGCAG	1 cut(s)	714
BshFI	GGCC	4 cut(s)	198, 403, 448, 555
BshNI	GGYRCC	1 cut(s)	491
BshTI	ACCGGT	1 cut(s)	262
BsiSI	CCGG	3 cut(s)	263, 316, 449
BslI	CCNNNNNNNGG	6 cut(s)	147, 294, 455, 501, 502, 577
BsmI	GAATGC	2 cut(s)	219, 589
BsnI	GGCC	4 cut(s)	198, 403, 448, 555
Bsp1286I	GDGCHC	2 cut(s)	140, 180
Bsp1407I	TGTACA	1 cut(s)	711
Bsp143I	GATC	2 cut(s)	52, 666
BspACI	CCGC	2 cut(s)	239, 275
BspANI	GGCC	4 cut(s)	198, 403, 448, 555
BspCNI	CTCAG	1 cut(s)	351
BspLI	GGNNCC	2 cut(s)	402, 493
BspMI	ACCTGC	1 cut(s)	694
BspPI	GGATC	1 cut(s)	47
BspT107I	GGYRCC	1 cut(s)	491
BsrDI	GCAATG	1 cut(s)	239
BsrFI	RCCGGY	2 cut(s)	262, 448
BsrGI	TGTACA	1 cut(s)	711
BsrI	ACTGG	1 cut(s)	651
BssAI	RCCGGY	2 cut(s)	262, 448
BssECI	CCNNGG	2 cut(s)	293, 487
BssMI	GATC	2 cut(s)	52, 666
BssT1I	CCWWGG	1 cut(s)	293
Bst4CI	ACNGT	3 cut(s)	491, 612, 727
BstAUI	TGTACA	1 cut(s)	711
BstBAI	YACGTR	1 cut(s)	679
BstC8I	GCNNGC	3 cut(s)	72, 450, 587
BstDEI	CTNAG	2 cut(s)	338, 572
BstDSI	CCRYGG	1 cut(s)	487
BstF5I	GGATG	2 cut(s)	14, 378
BstH2I	RGCGCY	1 cut(s)	586
BstHHI	GCGC	1 cut(s)	585
BstKTI	GATC	2 cut(s)	55, 669
BstMBI	GATC	2 cut(s)	52, 666
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 297, 695, 704
BstSLI	GKGCMC	2 cut(s)	140, 180
BstSNI	TACGTA	1 cut(s)	679
BstV1I	GCAGC	3 cut(s)	8, 86, 707
BsuI	GTATCC	1 cut(s)	475
BsuRI	GGCC	4 cut(s)	198, 403, 448, 555
BtgI	CCRYGG	1 cut(s)	487
BtsCI	GGATG	2 cut(s)	14, 378
BtsIMutI	CAGTG	2 cut(s)	608, 644
BveI	ACCTGC	1 cut(s)	694
Cac8I	GCNNGC	3 cut(s)	72, 450, 587
CfoI	GCGC	1 cut(s)	585
Cfr10I	RCCGGY	2 cut(s)	262, 448
Cfr13I	GGNCC	2 cut(s)	401, 554
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	3 cut(s)	492, 712, 760
CspAI	ACCGGT	1 cut(s)	262
CviAII	CATG	1 cut(s)	385
CviQI	GTAC	3 cut(s)	492, 712, 760
DdeI	CTNAG	2 cut(s)	338, 572
DpnI	GATC	2 cut(s)	54, 668
DpnII	GATC	2 cut(s)	52, 666
EaeI	YGGCCR	2 cut(s)	196, 446
Eco105I	TACGTA	1 cut(s)	679
Eco130I	CCWWGG	1 cut(s)	293
Eco47III	AGCGCT	1 cut(s)	584
EcoT14I	CCWWGG	1 cut(s)	293
ErhI	CCWWGG	1 cut(s)	293
FaeI	CATG	1 cut(s)	388
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FatI	CATG	1 cut(s)	384
FauNDI	CATATG	1 cut(s)	143
FbaI	TGATCA	1 cut(s)	666
Fnu4HI	GCNGC	3 cut(s)	22, 75, 696
FokI	GGATG	1 cut(s)	385
Fsp4HI	GCNGC	3 cut(s)	22, 75, 696
FspBI	CTAG	3 cut(s)	131, 411, 774
GlaI	GCGC	1 cut(s)	584
GluI	GCNGC	3 cut(s)	22, 75, 696
GsaI	CCCAGC	1 cut(s)	151
HaeII	RGCGCY	1 cut(s)	586
HaeIII	GGCC	4 cut(s)	198, 403, 448, 555
HapII	CCGG	3 cut(s)	263, 316, 449
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	1 cut(s)	585
Hin1II	CATG	1 cut(s)	388
Hin6I	GCGC	1 cut(s)	583
HinP1I	GCGC	1 cut(s)	583
HinfI	GANTC	4 cut(s)	152, 342, 541, 598
HpaII	CCGG	3 cut(s)	263, 316, 449
HphI	GGTGA	4 cut(s)	404, 440, 715, 796
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	4 cut(s)	91, 341, 473, 603
Hpy188III	TCNNGA	3 cut(s)	80, 370, 664
Hpy8I	GTNNAC	1 cut(s)	325
Hpy99I	CGWCG	3 cut(s)	70, 473, 731
HpyAV	CCTTC	3 cut(s)	119, 322, 430
HpyCH4III	ACNGT	3 cut(s)	491, 612, 727
HpyCH4IV	ACGT	2 cut(s)	183, 678
HpyCH4V	TGCA	8 cut(s)	14, 24, 219, 232, 300, 589, 695, 767
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 297, 695, 704
HpyF3I	CTNAG	2 cut(s)	338, 572
HpySE526I	ACGT	2 cut(s)	183, 678
Hsp92II	CATG	1 cut(s)	388
HspAI	GCGC	1 cut(s)	583
KpnI	GGTACC	1 cut(s)	495
KroI	GCCGGC	1 cut(s)	448
KroNI	GCCGGC	1 cut(s)	450
Ksp22I	TGATCA	1 cut(s)	666
Kzo9I	GATC	2 cut(s)	52, 666
LmnI	GCTCC	1 cut(s)	580
Lsp1109I	GCAGC	3 cut(s)	8, 86, 707
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	3 cut(s)	131, 411, 774
MaeII	ACGT	2 cut(s)	183, 678
MaeIII	GTNAC	1 cut(s)	606
MalI	GATC	2 cut(s)	54, 668
MboI	GATC	2 cut(s)	52, 666
MboII	GAAGA	6 cut(s)	96, 356, 585, 610, 743, 746
MhlI	GDGCHC	2 cut(s)	140, 180
MlsI	TGGCCA	1 cut(s)	198
MluCI	AATT	4 cut(s)	7, 214, 248, 565
MluNI	TGGCCA	1 cut(s)	198
MmeI	TCCRAC	2 cut(s)	19, 451
MnlI	CCTC	5 cut(s)	66, 115, 215, 357, 495
Mox20I	TGGCCA	1 cut(s)	198
MroNI	GCCGGC	1 cut(s)	448
MscI	TGGCCA	1 cut(s)	198
MslI	CAYNNNNRTG	2 cut(s)	549, 728
Msp20I	TGGCCA	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	21
MspI	CCGG	3 cut(s)	263, 316, 449
Mva1269I	GAATGC	2 cut(s)	219, 589
MwoI	GCNNNNNNNGC	4 cut(s)	144, 297, 695, 704
NaeI	GCCGGC	1 cut(s)	450
NdeI	CATATG	1 cut(s)	143
NdeII	GATC	2 cut(s)	52, 666
NgoMIV	GCCGGC	1 cut(s)	448
NlaIII	CATG	1 cut(s)	388
NlaIV	GGNNCC	2 cut(s)	402, 493
NmuCI	GTSAC	1 cut(s)	606
OliI	CACNNNNGTG	2 cut(s)	549, 728
PctI	GAATGC	2 cut(s)	219, 589
PdiI	GCCGGC	1 cut(s)	450
PfeI	GAWTC	4 cut(s)	152, 342, 541, 598
PflMI	CCANNNNNTGG	1 cut(s)	147
PinAI	ACCGGT	1 cut(s)	262
PkrI	GCNGC	3 cut(s)	23, 76, 697
Ppu21I	YACGTR	1 cut(s)	679
PspFI	CCCAGC	1 cut(s)	147
PspN4I	GGNNCC	2 cut(s)	402, 493
PspPI	GGNCC	2 cut(s)	401, 554
PvuII	CAGCTG	1 cut(s)	21
RsaI	GTAC	3 cut(s)	493, 713, 761
RsaNI	GTAC	3 cut(s)	492, 712, 760
RseI	CAYNNNNRTG	2 cut(s)	549, 728
SatI	GCNGC	3 cut(s)	22, 75, 696
Sau3AI	GATC	2 cut(s)	52, 666
Sau96I	GGNCC	2 cut(s)	401, 554
SduI	GDGCHC	2 cut(s)	140, 180
SetI	ASST	9 cut(s)	23, 31, 79, 186, 273, 422, 681, 688, 809
SfaNI	GCATC	1 cut(s)	23
SmiMI	CAYNNNNRTG	2 cut(s)	549, 728
SnaBI	TACGTA	1 cut(s)	679
Sse9I	AATT	4 cut(s)	7, 214, 248, 565
SsiI	CCGC	2 cut(s)	239, 275
SspMI	CTAG	3 cut(s)	131, 411, 774
StyI	CCWWGG	1 cut(s)	293
TaaI	ACNGT	3 cut(s)	491, 612, 727
TaiI	ACGT	2 cut(s)	186, 681
TaqI	TCGA	3 cut(s)	81, 539, 596
TasI	AATT	4 cut(s)	7, 214, 248, 565
TatI	WGTACW	2 cut(s)	711, 759
TfiI	GAWTC	4 cut(s)	152, 342, 541, 598
TscAI	CASTG	2 cut(s)	615, 651
TseFI	GTSAC	1 cut(s)	606
TseI	GCWGC	3 cut(s)	21, 74, 695
Tsp45I	GTSAC	1 cut(s)	606
TspDTI	ATGAA	2 cut(s)	401, 614
TspGWI	ACGGA	1 cut(s)	457
TspRI	CASTG	2 cut(s)	615, 651
Van91I	CCANNNNNTGG	1 cut(s)	147
XapI	RAATTY	2 cut(s)	7, 248
XspI	CTAG	3 cut(s)	131, 411, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.