Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010842.1

Orthogroup ID

OG0009032

Physical Location & Seq

Genomic Coordinates Reverse (-)

20500 .. 22223

Gene Structure 1724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010842.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atgagtttgcattttagaaatgcatgctcttggctgtcgttatttggcgatatgataccttcagtgcctctttgtatagctggaaatgttggagtgaaaaatgactttctaaggccaacacaagctacttctgaatgctgctccgatgatgagggttcctctggtgtcggcagagaggaaggactagagtgccccatatgctgggaatctttcaatattgttgaaaatgtgccctatgttttatggtgtggtcataccctctgtaaaaattgcattctgggtctgcaatgggctgttgtcaagttccccaccctaccaattcagctcccgctatttatctcctgcccatggtgcaatctgttatccttccggctggtttacaggggaaatctcaaatttcctcgcaagaactactttcttttgtggatggttgaaagcatgaatggtgatagagtgaagtctcattctacctgctctggtgataatcaaccagcctggccggtaaacggaaatgtatccgcaggaagtcaactgaaccataggaggggacaatatattcgccatcccgagccaccagggacaaatcataatcatggcgtcgtcaataattaccttagtatggagcgattgcattcttcccttcggaagtcactgtttttcttcgttcatttgacagcaaagttccctctggttgtcatatttcttctgatcatcttatatgcaatacctgccagtgcagccatattggccttgtacgtacttatcacggtgctgtttgctctcccgtcgtttcttatcttgtactttgcatatcctagtttggattggcttgtgagagaaatcatcacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_UBOX

Protein Analysis

283

Amino Acids

31.92

Weight (kDa)

8.25

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29270 AT3G29270
fragaria_vesca	FvH4_6g47511 FvH4_6g47511
malus_domestica	MD09G1061100.v1.1 MD17G1056500.v1.1
prunus_persica	Prupe.3G259000_v2.0.a1 Prupe.3G259000_v2.0.a1 Prupe.3G259000_v2.0.a1 Prupe.3G259000_v2.0.a1 Prupe.3G259000_v2.0.a1
pyrus_communis	pycom111g05160
rosa_chinensis	RchiOBHm_Chr2g0166551
rosa_laevigata	RLG00000021629
rosa_multiflora	Rmu_sc0010842.1_g000008
rosa_roxburghii	Rroxscaffold_2G00084770
rosa_rugosa	Rorug02G0524200
rosa_samantha	Rh2AG590100 Rh2BG602200 Rh2CG572900 Rh2DG612800
rosa_wichuraiana	Rw2G049190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	479, 736
AccB7I	CCANNNNNTGG	1 cut(s)	201
AciI	CCGC	2 cut(s)	329, 519
AcoI	YGGCCR	1 cut(s)	497
AcsI	RAATTY	1 cut(s)	395
AcuI	CTGAAG	1 cut(s)	45
AcyI	GRCGYC	1 cut(s)	597
AfaI	GTAC	3 cut(s)	755, 759, 803
AfiI	CCNNNNNNNGG	5 cut(s)	201, 348, 506, 544, 619
AgsI	TTSAA	3 cut(s)	214, 224, 434
AjnI	CCWGG	2 cut(s)	494, 574
AluBI	AGCT	3 cut(s)	80, 125, 325
AluI	AGCT	3 cut(s)	80, 125, 325
Alw26I	GTCTC	1 cut(s)	465
Ama87I	CYCGRG	1 cut(s)	566
AoxI	GGCC	3 cut(s)	113, 497, 747
ApeKI	GCWGC	2 cut(s)	138, 737
ApoI	RAATTY	1 cut(s)	395
ArsI	GACNNNNNNTTYG	2 cut(s)	540, 572
AsuHPI	GGTGA	3 cut(s)	458, 491, 838
AvaI	CYCGRG	1 cut(s)	566
BaeGI	GKGCMC	2 cut(s)	194, 234
BbvI	GCAGC	2 cut(s)	125, 749
BccI	CCATC	2 cut(s)	421, 570
BciT130I	CCWGG	2 cut(s)	496, 576
BciVI	GTATCC	1 cut(s)	526
BclI	TGATCA	1 cut(s)	708
BcoDI	GTCTC	1 cut(s)	465
BfaI	CTAG	2 cut(s)	185, 816
BfuAI	ACCTGC	2 cut(s)	479, 736
BfuI	GTATCC	1 cut(s)	526
BglI	GCCNNNNNGGC	1 cut(s)	746
BisI	GCNGC	2 cut(s)	139, 738
BlsI	GCNGC	2 cut(s)	140, 739
Bme1390I	CCNGG	2 cut(s)	496, 576
BmeT110I	CYCGRG	1 cut(s)	566
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	2 cut(s)	496, 576
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
BsaAI	YACGTR	1 cut(s)	757
BsaHI	GRCGYC	1 cut(s)	597
BsaJI	CCNNGG	2 cut(s)	347, 575
Bsc4I	CCNNNNNNNGG	5 cut(s)	201, 348, 506, 544, 619
Bse118I	RCCGGY	1 cut(s)	499
Bse1I	ACTGG	1 cut(s)	732
Bse3DI	GCAATG	1 cut(s)	293
BseBI	CCWGG	2 cut(s)	496, 576
BseDI	CCNNGG	2 cut(s)	347, 575
BseGI	GGATG	2 cut(s)	432, 562
BseLI	CCNNNNNNNGG	5 cut(s)	201, 348, 506, 544, 619
BseMI	GCAATG	1 cut(s)	293
BseNI	ACTGG	1 cut(s)	732
BseSI	GKGCMC	2 cut(s)	194, 234
BseXI	GCAGC	2 cut(s)	125, 749
BseYI	CCCAGC	1 cut(s)	201
BsgI	GTGCAG	1 cut(s)	756
BshFI	GGCC	3 cut(s)	115, 499, 749
BsiHKCI	CYCGRG	1 cut(s)	566
BsiSI	CCGG	2 cut(s)	370, 500
BslFI	GGGAC	2 cut(s)	561, 592
BslI	CCNNNNNNNGG	5 cut(s)	201, 348, 506, 544, 619
BsmAI	GTCTC	1 cut(s)	465
BsmFI	GGGAC	2 cut(s)	561, 592
BsmI	GAATGC	3 cut(s)	140, 273, 631
BsnI	GGCC	3 cut(s)	115, 499, 749
BsoBI	CYCGRG	1 cut(s)	566
Bsp1286I	GDGCHC	2 cut(s)	194, 234
Bsp143I	GATC	1 cut(s)	708
Bsp19I	CCATGG	1 cut(s)	347
BspACI	CCGC	2 cut(s)	329, 519
BspANI	GGCC	3 cut(s)	115, 499, 749
BspLI	GGNNCC	1 cut(s)	157
BspMI	ACCTGC	2 cut(s)	479, 736
BsrDI	GCAATG	1 cut(s)	293
BsrFI	RCCGGY	1 cut(s)	499
BsrI	ACTGG	1 cut(s)	732
BssAI	RCCGGY	1 cut(s)	499
BssECI	CCNNGG	2 cut(s)	347, 575
BssMI	GATC	1 cut(s)	708
BssNI	GRCGYC	1 cut(s)	597
BssT1I	CCWWGG	1 cut(s)	347
Bst2UI	CCWGG	2 cut(s)	496, 576
Bst4CI	ACNGT	2 cut(s)	654, 769
BstACI	GRCGYC	1 cut(s)	597
BstAPI	GCANNNNNTGC	1 cut(s)	728
BstBAI	YACGTR	1 cut(s)	757
BstC8I	GCNNGC	1 cut(s)	25
BstDEI	CTNAG	2 cut(s)	110, 614
BstDSI	CCRYGG	1 cut(s)	347
BstF5I	GGATG	2 cut(s)	432, 562
BstKTI	GATC	1 cut(s)	711
BstMAI	GTCTC	1 cut(s)	465
BstMBI	GATC	1 cut(s)	708
BstMWI	GCNNNNNNNGC	5 cut(s)	198, 351, 728, 737, 746
BstNI	CCWGG	2 cut(s)	496, 576
BstNSI	RCATGY	1 cut(s)	27
BstSCI	CCNGG	2 cut(s)	494, 574
BstSLI	GKGCMC	2 cut(s)	194, 234
BstSNI	TACGTA	1 cut(s)	757
BstV1I	GCAGC	2 cut(s)	125, 749
BsuI	GTATCC	1 cut(s)	526
BsuRI	GGCC	3 cut(s)	115, 499, 749
BtgI	CCRYGG	1 cut(s)	347
BtsCI	GGATG	2 cut(s)	432, 562
BtsIMutI	CAGTG	3 cut(s)	69, 650, 739
BveI	ACCTGC	2 cut(s)	479, 736
Cac8I	GCNNGC	1 cut(s)	25
Cfr10I	RCCGGY	1 cut(s)	499
CseI	GACGC	1 cut(s)	586
Csp6I	GTAC	3 cut(s)	754, 758, 802
CviAII	CATG	4 cut(s)	24, 348, 439, 593
CviQI	GTAC	3 cut(s)	754, 758, 802
DdeI	CTNAG	2 cut(s)	110, 614
DpnI	GATC	1 cut(s)	710
DpnII	GATC	1 cut(s)	708
EaeI	YGGCCR	1 cut(s)	497
Eco105I	TACGTA	1 cut(s)	757
Eco130I	CCWWGG	1 cut(s)	347
Eco57I	CTGAAG	1 cut(s)	45
Eco88I	CYCGRG	1 cut(s)	566
EcoRII	CCWGG	2 cut(s)	494, 574
EcoT14I	CCWWGG	1 cut(s)	347
EcoT22I	ATGCAT	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	347
FaeI	CATG	4 cut(s)	27, 351, 442, 596
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FaqI	GGGAC	2 cut(s)	561, 592
FatI	CATG	4 cut(s)	23, 347, 438, 592
FauI	CCCGC	1 cut(s)	336
FauNDI	CATATG	1 cut(s)	197
FbaI	TGATCA	1 cut(s)	708
Fnu4HI	GCNGC	2 cut(s)	139, 738
FokI	GGATG	2 cut(s)	439, 549
Fsp4HI	GCNGC	2 cut(s)	139, 738
FspBI	CTAG	2 cut(s)	185, 816
GluI	GCNGC	2 cut(s)	139, 738
GsaI	CCCAGC	1 cut(s)	205
HaeIII	GGCC	3 cut(s)	115, 499, 749
HapII	CCGG	2 cut(s)	370, 500
HgaI	GACGC	1 cut(s)	586
Hin1I	GRCGYC	1 cut(s)	597
Hin1II	CATG	4 cut(s)	27, 351, 442, 596
HincII	GTYRAC	1 cut(s)	530
HindII	GTYRAC	1 cut(s)	530
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	2 cut(s)	370, 500
HphI	GGTGA	3 cut(s)	458, 491, 838
Hpy166II	GTNNAC	3 cut(s)	379, 505, 530
Hpy188I	TCNGA	4 cut(s)	133, 145, 645, 708
Hpy188III	TCNNGA	1 cut(s)	566
Hpy8I	GTNNAC	3 cut(s)	379, 505, 530
Hpy99I	CGWCG	2 cut(s)	602, 790
HpyAV	CCTTC	4 cut(s)	69, 173, 376, 650
HpyCH4III	ACNGT	2 cut(s)	654, 769
HpyCH4IV	ACGT	1 cut(s)	756
HpyCH4V	TGCA	9 cut(s)	10, 23, 273, 286, 354, 631, 722, 737, 809
HpyF10VI	GCNNNNNNNGC	5 cut(s)	198, 351, 728, 737, 746
HpyF3I	CTNAG	2 cut(s)	110, 614
HpySE526I	ACGT	1 cut(s)	756
Hsp92I	GRCGYC	1 cut(s)	597
Hsp92II	CATG	4 cut(s)	27, 351, 442, 596
Ksp22I	TGATCA	1 cut(s)	708
Kzo9I	GATC	1 cut(s)	708
LmnI	GCTCC	3 cut(s)	146, 330, 622
Lsp1109I	GCAGC	2 cut(s)	125, 749
MaeI	CTAG	2 cut(s)	185, 816
MaeII	ACGT	1 cut(s)	756
MaeIII	GTNAC	1 cut(s)	648
MalI	GATC	1 cut(s)	710
MboI	GATC	1 cut(s)	708
MboII	GAAGA	3 cut(s)	627, 652, 695
MhlI	GDGCHC	2 cut(s)	194, 234
MluCI	AATT	4 cut(s)	268, 318, 395, 607
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	8 cut(s)	78, 145, 169, 169, 269, 411, 537, 696
Mph1103I	ATGCAT	1 cut(s)	25
MslI	CAYNNNNRTG	1 cut(s)	591
MspI	CCGG	2 cut(s)	370, 500
MspR9I	CCNGG	2 cut(s)	496, 576
Mva1269I	GAATGC	3 cut(s)	140, 273, 631
MvaI	CCWGG	2 cut(s)	496, 576
MwoI	GCNNNNNNNGC	5 cut(s)	198, 351, 728, 737, 746
NcoI	CCATGG	1 cut(s)	347
NdeI	CATATG	1 cut(s)	197
NdeII	GATC	1 cut(s)	708
NlaIII	CATG	4 cut(s)	27, 351, 442, 596
NlaIV	GGNNCC	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	648
NsiI	ATGCAT	1 cut(s)	25
NspI	RCATGY	1 cut(s)	27
PaeI	GCATGC	1 cut(s)	27
PctI	GAATGC	3 cut(s)	140, 273, 631
PfeI	GAWTC	1 cut(s)	206
PflMI	CCANNNNNTGG	1 cut(s)	201
PkrI	GCNGC	2 cut(s)	140, 739
Ppu21I	YACGTR	1 cut(s)	757
Psp6I	CCWGG	2 cut(s)	494, 574
PspFI	CCCAGC	1 cut(s)	201
PspGI	CCWGG	2 cut(s)	494, 574
PspN4I	GGNNCC	1 cut(s)	157
RsaI	GTAC	3 cut(s)	755, 759, 803
RsaNI	GTAC	3 cut(s)	754, 758, 802
RseI	CAYNNNNRTG	1 cut(s)	591
SatI	GCNGC	2 cut(s)	139, 738
Sau3AI	GATC	1 cut(s)	708
ScrFI	CCNGG	2 cut(s)	496, 576
SduI	GDGCHC	2 cut(s)	194, 234
SetI	ASST	9 cut(s)	61, 82, 127, 327, 473, 615, 730, 759, 851
SmiMI	CAYNNNNRTG	1 cut(s)	591
SnaBI	TACGTA	1 cut(s)	757
SphI	GCATGC	1 cut(s)	27
Sse9I	AATT	4 cut(s)	268, 318, 395, 607
SsiI	CCGC	2 cut(s)	329, 519
SspI	AATATT	1 cut(s)	217
SspMI	CTAG	2 cut(s)	185, 816
StyD4I	CCNGG	2 cut(s)	494, 574
StyI	CCWWGG	1 cut(s)	347
TaaI	ACNGT	2 cut(s)	654, 769
TaiI	ACGT	1 cut(s)	759
TasI	AATT	4 cut(s)	268, 318, 395, 607
TatI	WGTACW	1 cut(s)	801
TfiI	GAWTC	1 cut(s)	206
TscAI	CASTG	3 cut(s)	69, 657, 739
TseFI	GTSAC	1 cut(s)	648
TseI	GCWGC	2 cut(s)	138, 737
Tsp45I	GTSAC	1 cut(s)	648
TspDTI	ATGAA	2 cut(s)	455, 656
TspGWI	ACGGA	1 cut(s)	522
TspRI	CASTG	3 cut(s)	69, 657, 739
Van91I	CCANNNNNTGG	1 cut(s)	201
XapI	RAATTY	1 cut(s)	395
XceI	RCATGY	1 cut(s)	27
XspI	CTAG	2 cut(s)	185, 816
Zsp2I	ATGCAT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.