Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009032

Physical Location & Seq

Genomic Coordinates Forward (+)

4185599 .. 4187618

Gene Structure 2020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1061100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTGGAATTTTGCATCCAGCTGCATAACTGGAAGTGTTGGATTGAAAAGCGATCCTCTAAAGCCGACGCAAGCAGCTCTTGAATGTTCTGACGACGAGAGTTCTTCGGTTGTTGGCAGAGAGGAAGGACTAGAGTGCCCGATATGTTGGGAATCCTTCAACATTGTTGAGAATGTGCCCTACGTTTTATGGTGTGGCCATACCCTCTGTAAGAATTGCATTCTGGGACTGCAATGGGCGGTTGTGAAATTCCCCACTTTGCCGATTCAGCTTCCGCTTTTTATCTCCTGCCCGTGGTGCAACCTATTGTCCTTCCGGCTTGTTTACAGGGGAAATCTCAGGTTCCCTCGCAAGAACTACTTTCTTCTCTGGATGGTTGAGAGCATGAATGGCGATAGGGGACCGCAGTCTAATTCTACCTTCTCTGGTGATAATCAGTCTGTCTGGCCGGCAAATGGAAATGTCTCTGTGGGAACTCAAGCGAGCCATGGTACAGGTACCCACAGGAGGGGGCAACATATTCGCCATATCGAGCAATCTGGGTTGAATCACAATCATGGCGCTGTCAATAATTACCTTAGTGTGGAGCGTTTGCATTCTTCAATTCAGAAGTCACTTGTTTTCTTCGTTCATTTGACAGCAAAGTTCCCGCTGGTTGTCATATTTCTTCTGATCATCTTATATGTAATACCTGCCTGTGCAGTCTTGTTGGCTTTGTACATAGTCATCACCGTTGTGTTTGCTCTCCCGTCATTTCTTCTTCTGTACTTTGCATATCCTAGTTTGGATTGGCTTGTCAGGGAAATCCTCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_UBOX

Protein Analysis

272

Amino Acids

30.39

Weight (kDa)

7.59

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_5	PF14634	45 - 100	1.3e-06	zinc-RING finger domain
zf-RING_UBOX	PF13445	46 - 79	6e-09	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29270 AT3G29270
fragaria_vesca	FvH4_6g47511 FvH4_6g47511
malus_domestica	MD09G1061100.v1.1 MD17G1056500.v1.1
prunus_persica	Prupe.3G259000_v2.0.a1 Prupe.3G259000_v2.0.a1 Prupe.3G259000_v2.0.a1 Prupe.3G259000_v2.0.a1 Prupe.3G259000_v2.0.a1
pyrus_communis	pycom111g05160
rosa_chinensis	RchiOBHm_Chr2g0166551
rosa_laevigata	RLG00000021629
rosa_multiflora	Rmu_sc0010842.1_g000008
rosa_roxburghii	Rroxscaffold_2G00084770
rosa_rugosa	Rorug02G0524200
rosa_samantha	Rh2AG590100 Rh2BG602200 Rh2CG572900 Rh2DG612800
rosa_wichuraiana	Rw2G049190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	700
Acc65I	GGTACC	1 cut(s)	497
AccB1I	GGYRCC	1 cut(s)	497
AciI	CCGC	4 cut(s)	239, 275, 404, 650
AclWI	GGATC	1 cut(s)	47
AcoI	YGGCCR	2 cut(s)	196, 446
AcsI	RAATTY	2 cut(s)	7, 248
AfaI	GTAC	4 cut(s)	493, 499, 719, 767
AfiI	CCNNNNNNNGG	5 cut(s)	294, 455, 507, 508, 583
AgsI	TTSAA	5 cut(s)	46, 83, 160, 547, 603
AleI	CACNNNNGTG	1 cut(s)	734
AluBI	AGCT	3 cut(s)	21, 77, 271
AluI	AGCT	3 cut(s)	21, 77, 271
Alw26I	GTCTC	1 cut(s)	469
AlwI	GGATC	1 cut(s)	47
AoxI	GGCC	2 cut(s)	196, 446
ApeKI	GCWGC	2 cut(s)	21, 74
ApoI	RAATTY	2 cut(s)	7, 248
Asp718I	GGTACC	1 cut(s)	497
AspLEI	GCGC	1 cut(s)	563
AspS9I	GGNCC	1 cut(s)	401
AsuHPI	GGTGA	3 cut(s)	440, 721, 802
AvaII	GGWCC	1 cut(s)	401
BaeGI	GKGCMC	2 cut(s)	140, 180
BalI	TGGCCA	1 cut(s)	198
BanI	GGYRCC	1 cut(s)	497
BbvI	GCAGC	2 cut(s)	8, 86
BccI	CCATC	1 cut(s)	367
BcgI	CGANNNNNNTGC	2 cut(s)	503, 537
BclI	TGATCA	1 cut(s)	672
BcoDI	GTCTC	1 cut(s)	469
BfaI	CTAG	2 cut(s)	131, 780
BfoI	RGCGCY	1 cut(s)	564
BfuAI	ACCTGC	1 cut(s)	700
BisI	GCNGC	2 cut(s)	22, 75
BlsI	GCNGC	2 cut(s)	23, 76
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	3 cut(s)	344, 402, 499
BmsI	GCATC	1 cut(s)	23
BoxI	GACNNNNGTC	1 cut(s)	406
BpuEI	CTTGAG	1 cut(s)	462
BsaJI	CCNNGG	2 cut(s)	293, 487
Bsc4I	CCNNNNNNNGG	5 cut(s)	294, 455, 507, 508, 583
Bse118I	RCCGGY	1 cut(s)	448
Bse1I	ACTGG	1 cut(s)	34
Bse3DI	GCAATG	1 cut(s)	239
BseDI	CCNNGG	2 cut(s)	293, 487
BseGI	GGATG	2 cut(s)	14, 378
BseLI	CCNNNNNNNGG	5 cut(s)	294, 455, 507, 508, 583
BseMI	GCAATG	1 cut(s)	239
BseMII	CTCAG	1 cut(s)	352
BseNI	ACTGG	1 cut(s)	34
BseSI	GKGCMC	2 cut(s)	140, 180
BseXI	GCAGC	2 cut(s)	8, 86
BsgI	GTGCAG	1 cut(s)	720
BshFI	GGCC	2 cut(s)	198, 448
BshNI	GGYRCC	1 cut(s)	497
BsiSI	CCGG	2 cut(s)	316, 449
BslFI	GGGAC	2 cut(s)	240, 414
BslI	CCNNNNNNNGG	5 cut(s)	294, 455, 507, 508, 583
BsmAI	GTCTC	1 cut(s)	469
BsmFI	GGGAC	2 cut(s)	240, 414
BsmI	GAATGC	2 cut(s)	219, 595
BsnI	GGCC	2 cut(s)	198, 448
Bsp1286I	GDGCHC	2 cut(s)	140, 180
Bsp1407I	TGTACA	1 cut(s)	717
Bsp143I	GATC	2 cut(s)	52, 672
Bsp19I	CCATGG	1 cut(s)	487
BspACI	CCGC	4 cut(s)	239, 275, 404, 650
BspANI	GGCC	2 cut(s)	198, 448
BspCNI	CTCAG	1 cut(s)	351
BspLI	GGNNCC	3 cut(s)	344, 402, 499
BspMI	ACCTGC	1 cut(s)	700
BspPI	GGATC	1 cut(s)	47
BspT107I	GGYRCC	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	239
BsrFI	RCCGGY	1 cut(s)	448
BsrGI	TGTACA	1 cut(s)	717
BsrI	ACTGG	1 cut(s)	34
BssAI	RCCGGY	1 cut(s)	448
BssECI	CCNNGG	2 cut(s)	293, 487
BssMI	GATC	2 cut(s)	52, 672
BssT1I	CCWWGG	1 cut(s)	487
Bst4CI	ACNGT	1 cut(s)	733
BstAUI	TGTACA	1 cut(s)	717
BstC8I	GCNNGC	3 cut(s)	72, 450, 484
BstDEI	CTNAG	2 cut(s)	338, 578
BstDSI	CCRYGG	2 cut(s)	293, 487
BstF5I	GGATG	2 cut(s)	14, 378
BstH2I	RGCGCY	1 cut(s)	564
BstHHI	GCGC	1 cut(s)	563
BstKTI	GATC	2 cut(s)	55, 675
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	2 cut(s)	52, 672
BstMWI	GCNNNNNNNGC	3 cut(s)	268, 297, 390
BstPAI	GACNNNNGTC	1 cut(s)	406
BstSLI	GKGCMC	2 cut(s)	140, 180
BstV1I	GCAGC	2 cut(s)	8, 86
BsuRI	GGCC	2 cut(s)	198, 448
BtgI	CCRYGG	2 cut(s)	293, 487
BtsCI	GGATG	2 cut(s)	14, 378
BveI	ACCTGC	1 cut(s)	700
Cac8I	GCNNGC	3 cut(s)	72, 450, 484
CfoI	GCGC	1 cut(s)	563
Cfr10I	RCCGGY	1 cut(s)	448
Cfr13I	GGNCC	1 cut(s)	401
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	4 cut(s)	492, 498, 718, 766
CviAII	CATG	3 cut(s)	385, 488, 557
CviQI	GTAC	4 cut(s)	492, 498, 718, 766
DdeI	CTNAG	2 cut(s)	338, 578
DpnI	GATC	2 cut(s)	54, 674
DpnII	GATC	2 cut(s)	52, 672
EaeI	YGGCCR	2 cut(s)	196, 446
Eco130I	CCWWGG	1 cut(s)	487
Eco47I	GGWCC	1 cut(s)	401
EcoT14I	CCWWGG	1 cut(s)	487
ErhI	CCWWGG	1 cut(s)	487
FaeI	CATG	3 cut(s)	388, 491, 560
FalI	AAGNNNNNCTT	4 cut(s)	63, 95, 344, 376
FaqI	GGGAC	2 cut(s)	240, 414
FatI	CATG	3 cut(s)	384, 487, 556
FauI	CCCGC	1 cut(s)	657
FbaI	TGATCA	1 cut(s)	672
Fnu4HI	GCNGC	2 cut(s)	22, 75
FokI	GGATG	1 cut(s)	385
Fsp4HI	GCNGC	2 cut(s)	22, 75
FspBI	CTAG	2 cut(s)	131, 780
GlaI	GCGC	1 cut(s)	562
GluI	GCNGC	2 cut(s)	22, 75
HaeII	RGCGCY	1 cut(s)	564
HaeIII	GGCC	2 cut(s)	198, 448
HapII	CCGG	2 cut(s)	316, 449
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	1 cut(s)	563
Hin1II	CATG	3 cut(s)	388, 491, 560
Hin6I	GCGC	1 cut(s)	561
HinP1I	GCGC	1 cut(s)	561
HinfI	GANTC	3 cut(s)	152, 265, 547
HpaII	CCGG	2 cut(s)	316, 449
HphI	GGTGA	3 cut(s)	440, 721, 802
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	3 cut(s)	91, 609, 672
Hpy188III	TCNNGA	2 cut(s)	80, 370
Hpy8I	GTNNAC	1 cut(s)	325
Hpy99I	CGWCG	2 cut(s)	70, 98
HpyAV	CCTTC	4 cut(s)	119, 166, 322, 430
HpyCH4III	ACNGT	1 cut(s)	733
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	8 cut(s)	14, 24, 219, 232, 300, 595, 701, 773
HpyF10VI	GCNNNNNNNGC	3 cut(s)	268, 297, 390
HpyF3I	CTNAG	2 cut(s)	338, 578
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	3 cut(s)	388, 491, 560
HspAI	GCGC	1 cut(s)	561
KpnI	GGTACC	1 cut(s)	501
KroI	GCCGGC	1 cut(s)	448
KroNI	GCCGGC	1 cut(s)	450
Ksp22I	TGATCA	1 cut(s)	672
Kzo9I	GATC	2 cut(s)	52, 672
LmnI	GCTCC	1 cut(s)	586
Lsp1109I	GCAGC	2 cut(s)	8, 86
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	2 cut(s)	131, 780
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	612
MalI	GATC	2 cut(s)	54, 674
MboI	GATC	2 cut(s)	52, 672
MboII	GAAGA	7 cut(s)	96, 356, 591, 616, 659, 749, 752
MhlI	GDGCHC	2 cut(s)	140, 180
MlsI	TGGCCA	1 cut(s)	198
MluCI	AATT	6 cut(s)	7, 214, 248, 412, 571, 603
MluNI	TGGCCA	1 cut(s)	198
MmeI	TCCRAC	1 cut(s)	19
MnlI	CCTC	5 cut(s)	66, 115, 215, 357, 501
Mox20I	TGGCCA	1 cut(s)	198
MroNI	GCCGGC	1 cut(s)	448
MscI	TGGCCA	1 cut(s)	198
MslI	CAYNNNNRTG	2 cut(s)	555, 734
Msp20I	TGGCCA	1 cut(s)	198
MspA1I	CMGCKG	2 cut(s)	21, 652
MspI	CCGG	2 cut(s)	316, 449
Mva1269I	GAATGC	2 cut(s)	219, 595
MwoI	GCNNNNNNNGC	3 cut(s)	268, 297, 390
NaeI	GCCGGC	1 cut(s)	450
NcoI	CCATGG	1 cut(s)	487
NdeII	GATC	2 cut(s)	52, 672
NgoMIV	GCCGGC	1 cut(s)	448
NlaIII	CATG	3 cut(s)	388, 491, 560
NlaIV	GGNNCC	3 cut(s)	344, 402, 499
NmuCI	GTSAC	1 cut(s)	612
OliI	CACNNNNGTG	1 cut(s)	734
PctI	GAATGC	2 cut(s)	219, 595
PdiI	GCCGGC	1 cut(s)	450
PfeI	GAWTC	3 cut(s)	152, 265, 547
PkrI	GCNGC	2 cut(s)	23, 76
PshAI	GACNNNNGTC	1 cut(s)	406
PspN4I	GGNNCC	3 cut(s)	344, 402, 499
PspPI	GGNCC	1 cut(s)	401
PvuII	CAGCTG	1 cut(s)	21
RsaI	GTAC	4 cut(s)	493, 499, 719, 767
RsaNI	GTAC	4 cut(s)	492, 498, 718, 766
RseI	CAYNNNNRTG	2 cut(s)	555, 734
SatI	GCNGC	2 cut(s)	22, 75
Sau3AI	GATC	2 cut(s)	52, 672
Sau96I	GGNCC	1 cut(s)	401
SduI	GDGCHC	2 cut(s)	140, 180
SfaNI	GCATC	1 cut(s)	23
SinI	GGWCC	1 cut(s)	401
SmiMI	CAYNNNNRTG	2 cut(s)	555, 734
SmlI	CTYRAG	1 cut(s)	477
SmoI	CTYRAG	1 cut(s)	477
Sse9I	AATT	6 cut(s)	7, 214, 248, 412, 571, 603
SsiI	CCGC	4 cut(s)	239, 275, 404, 650
SspMI	CTAG	2 cut(s)	131, 780
StyI	CCWWGG	1 cut(s)	487
TaaI	ACNGT	1 cut(s)	733
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	1 cut(s)	531
TasI	AATT	6 cut(s)	7, 214, 248, 412, 571, 603
TatI	WGTACW	2 cut(s)	717, 765
TfiI	GAWTC	3 cut(s)	152, 265, 547
TseFI	GTSAC	1 cut(s)	612
TseI	GCWGC	2 cut(s)	21, 74
Tsp45I	GTSAC	1 cut(s)	612
TspDTI	ATGAA	2 cut(s)	401, 620
VpaK11BI	GGWCC	1 cut(s)	401
XapI	RAATTY	2 cut(s)	7, 248
XspI	CTAG	2 cut(s)	131, 780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.