Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0009032

Physical Location & Seq

Genomic Coordinates Forward (+)

3326958 .. 3327788

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g05160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGTTGTGGTGAAAATGTGGGATTTTGCATCCAGCTGCATAGCTGGAAGTGTTGGATTGAAAGGCGATCCTCTAAAGTCGACGCAAGCAGCTGTCGAATGTTCTGACGACGAGAGTTCTTCGGTTGTTGGCAGAGAGGAAGGACTAGAGTGCCCGATATGTTGGGAATCCTTCAACATTGTTGAGAATGTGCCCTACGTTTTATGGTGTGGCCATACCCTCTGTAAGAATTGCATTCTGGGACTGCAATGGGCGGTTGTGAAATTCCCCACTTTACCGATTCAGCTTCCGCTTTTTATCTCCTGCCCGTGGTGCAGCCTATTGTCCTTCCGGCTCGTTTACAGGGGAAATCTCAGGTTCCCTCGCAAGAACTACTTTCTTCTCTGGATGGTTGAGAGCATGAATGGTGATAGGGGACCGCATTCTAATTCTACCTTCTCTGGTGATAATCAGTCAGTCTGGCCGGCAACTGGAAATGTCTCTGTGGGAACTCAAGCGTGCCACGGTACAGGTGCCCACAGGAGGGGGCAACATATTCGCCATATCGAGCAATCTGGGTCGAATCGCAATCATGGCCCTGTCAATAATTACTTTGGTGTGGAGCGCTTGCAGTCTTCAATTCGGAATTCACTTGTTTTCTTCGTTCATTTGACAGCAAAGTTCCCGCTGGTTGTCATATTTCTTCTGATCATCTTATATGTAATACCTGCCTGTGCAGTCATGTTGGCTTTGTACATAGTCATCACCGTTGTGTTTGCACTCCCGTCATTTCTTCTTCTGTACTTTGCATATCCTAGTTTGGATTGGCTTGTCAGGGAAATCCTCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_UBOX

Protein Analysis

277

Amino Acids

30.86

Weight (kDa)

8.01

Isoelectric Point (pI)

52.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_5	PF14634	50 - 105	1.5e-06	zinc-RING finger domain
zf-RING_UBOX	PF13445	51 - 84	6.2e-09	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29270 AT3G29270
fragaria_vesca	FvH4_6g47511 FvH4_6g47511
malus_domestica	MD09G1061100.v1.1 MD17G1056500.v1.1
prunus_persica	Prupe.3G259000_v2.0.a1 Prupe.3G259000_v2.0.a1 Prupe.3G259000_v2.0.a1 Prupe.3G259000_v2.0.a1 Prupe.3G259000_v2.0.a1
pyrus_communis	pycom111g05160
rosa_chinensis	RchiOBHm_Chr2g0166551
rosa_laevigata	RLG00000021629
rosa_multiflora	Rmu_sc0010842.1_g000008
rosa_roxburghii	Rroxscaffold_2G00084770
rosa_rugosa	Rorug02G0524200
rosa_samantha	Rh2AG590100 Rh2BG602200 Rh2CG572900 Rh2DG612800
rosa_wichuraiana	Rw2G049190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	715
AccB1I	GGYRCC	1 cut(s)	512
AccI	GTMKAC	1 cut(s)	80
AciI	CCGC	4 cut(s)	254, 290, 419, 665
AclWI	GGATC	1 cut(s)	62
AcoI	YGGCCR	2 cut(s)	211, 461
AcsI	RAATTY	2 cut(s)	263, 625
AfaI	GTAC	3 cut(s)	508, 734, 782
AfeI	AGCGCT	1 cut(s)	605
AfiI	CCNNNNNNNGG	4 cut(s)	309, 470, 522, 523
AgsI	TTSAA	3 cut(s)	61, 175, 618
AleI	CACNNNNGTG	1 cut(s)	749
AluBI	AGCT	4 cut(s)	36, 44, 92, 286
AluI	AGCT	4 cut(s)	36, 44, 92, 286
Alw26I	GTCTC	1 cut(s)	484
AlwI	GGATC	1 cut(s)	62
Aor51HI	AGCGCT	1 cut(s)	605
AoxI	GGCC	3 cut(s)	211, 461, 574
ApeKI	GCWGC	3 cut(s)	36, 89, 315
ApoI	RAATTY	2 cut(s)	263, 625
AspLEI	GCGC	1 cut(s)	606
AspS9I	GGNCC	2 cut(s)	416, 575
AsuHPI	GGTGA	5 cut(s)	22, 419, 455, 736, 817
AvaII	GGWCC	1 cut(s)	416
BaeGI	GKGCMC	3 cut(s)	155, 195, 517
BalI	TGGCCA	1 cut(s)	213
BanI	GGYRCC	1 cut(s)	512
BbsI	GAAGAC	1 cut(s)	606
BbvI	GCAGC	3 cut(s)	23, 101, 327
BccI	CCATC	1 cut(s)	382
BcgI	CGANNNNNNTGC	2 cut(s)	518, 552
BclI	TGATCA	1 cut(s)	687
BcoDI	GTCTC	1 cut(s)	484
BfaI	CTAG	2 cut(s)	146, 795
BfoI	RGCGCY	1 cut(s)	607
BfuAI	ACCTGC	1 cut(s)	715
BisI	GCNGC	3 cut(s)	37, 90, 316
BlsI	GCNGC	3 cut(s)	38, 91, 317
Bme18I	GGWCC	1 cut(s)	416
BmgT120I	GGNCC	2 cut(s)	416, 575
BmiI	GGNNCC	3 cut(s)	359, 417, 514
BmsI	GCATC	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	606
BpuEI	CTTGAG	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	308, 502
Bsc4I	CCNNNNNNNGG	4 cut(s)	309, 470, 522, 523
Bse118I	RCCGGY	1 cut(s)	463
Bse1I	ACTGG	1 cut(s)	475
Bse3DI	GCAATG	1 cut(s)	254
BseDI	CCNNGG	2 cut(s)	308, 502
BseGI	GGATG	2 cut(s)	29, 393
BseLI	CCNNNNNNNGG	4 cut(s)	309, 470, 522, 523
BseMI	GCAATG	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	367
BseNI	ACTGG	1 cut(s)	475
BseSI	GKGCMC	3 cut(s)	155, 195, 517
BseXI	GCAGC	3 cut(s)	23, 101, 327
BsgI	GTGCAG	2 cut(s)	334, 735
BshFI	GGCC	3 cut(s)	213, 463, 576
BshNI	GGYRCC	1 cut(s)	512
BsiSI	CCGG	2 cut(s)	331, 464
BslFI	GGGAC	2 cut(s)	255, 429
BslI	CCNNNNNNNGG	4 cut(s)	309, 470, 522, 523
BsmAI	GTCTC	1 cut(s)	484
BsmFI	GGGAC	2 cut(s)	255, 429
BsmI	GAATGC	2 cut(s)	234, 421
BsnI	GGCC	3 cut(s)	213, 463, 576
Bsp1286I	GDGCHC	3 cut(s)	155, 195, 517
Bsp1407I	TGTACA	1 cut(s)	732
Bsp143I	GATC	2 cut(s)	67, 687
BspACI	CCGC	4 cut(s)	254, 290, 419, 665
BspANI	GGCC	3 cut(s)	213, 463, 576
BspCNI	CTCAG	1 cut(s)	366
BspLI	GGNNCC	3 cut(s)	359, 417, 514
BspMI	ACCTGC	1 cut(s)	715
BspPI	GGATC	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	512
BsrDI	GCAATG	1 cut(s)	254
BsrFI	RCCGGY	1 cut(s)	463
BsrGI	TGTACA	1 cut(s)	732
BsrI	ACTGG	1 cut(s)	475
BssAI	RCCGGY	1 cut(s)	463
BssECI	CCNNGG	2 cut(s)	308, 502
BssMI	GATC	2 cut(s)	67, 687
Bst4CI	ACNGT	2 cut(s)	506, 748
BstAUI	TGTACA	1 cut(s)	732
BstC8I	GCNNGC	4 cut(s)	87, 465, 499, 608
BstDEI	CTNAG	1 cut(s)	353
BstDSI	CCRYGG	2 cut(s)	308, 502
BstF5I	GGATG	2 cut(s)	29, 393
BstH2I	RGCGCY	1 cut(s)	607
BstHHI	GCGC	1 cut(s)	606
BstKTI	GATC	2 cut(s)	70, 690
BstMAI	GTCTC	1 cut(s)	484
BstMBI	GATC	2 cut(s)	67, 687
BstMWI	GCNNNNNNNGC	2 cut(s)	312, 573
BstSLI	GKGCMC	3 cut(s)	155, 195, 517
BstV1I	GCAGC	3 cut(s)	23, 101, 327
BstV2I	GAAGAC	1 cut(s)	606
BsuRI	GGCC	3 cut(s)	213, 463, 576
BtgI	CCRYGG	2 cut(s)	308, 502
BtsCI	GGATG	2 cut(s)	29, 393
BveI	ACCTGC	1 cut(s)	715
Cac8I	GCNNGC	4 cut(s)	87, 465, 499, 608
CfoI	GCGC	1 cut(s)	606
Cfr10I	RCCGGY	1 cut(s)	463
Cfr13I	GGNCC	2 cut(s)	416, 575
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	3 cut(s)	507, 733, 781
CviAII	CATG	3 cut(s)	400, 572, 721
CviQI	GTAC	3 cut(s)	507, 733, 781
DdeI	CTNAG	1 cut(s)	353
DpnI	GATC	2 cut(s)	69, 689
DpnII	GATC	2 cut(s)	67, 687
EaeI	YGGCCR	2 cut(s)	211, 461
Eco47I	GGWCC	1 cut(s)	416
Eco47III	AGCGCT	1 cut(s)	605
EcoRI	GAATTC	1 cut(s)	625
FaeI	CATG	3 cut(s)	403, 575, 724
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FaqI	GGGAC	2 cut(s)	255, 429
FatI	CATG	3 cut(s)	399, 571, 720
FauI	CCCGC	1 cut(s)	672
FbaI	TGATCA	1 cut(s)	687
FblI	GTMKAC	1 cut(s)	80
Fnu4HI	GCNGC	3 cut(s)	37, 90, 316
FokI	GGATG	2 cut(s)	16, 400
Fsp4HI	GCNGC	3 cut(s)	37, 90, 316
FspBI	CTAG	2 cut(s)	146, 795
GlaI	GCGC	1 cut(s)	605
GluI	GCNGC	3 cut(s)	37, 90, 316
HaeII	RGCGCY	1 cut(s)	607
HaeIII	GGCC	3 cut(s)	213, 463, 576
HapII	CCGG	2 cut(s)	331, 464
HgaI	GACGC	1 cut(s)	91
HhaI	GCGC	1 cut(s)	606
Hin1II	CATG	3 cut(s)	403, 575, 724
Hin6I	GCGC	1 cut(s)	604
HinP1I	GCGC	1 cut(s)	604
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HinfI	GANTC	3 cut(s)	167, 280, 562
HpaII	CCGG	2 cut(s)	331, 464
HphI	GGTGA	5 cut(s)	22, 419, 455, 736, 817
Hpy166II	GTNNAC	2 cut(s)	81, 340
Hpy188I	TCNGA	3 cut(s)	106, 624, 687
Hpy188III	TCNNGA	1 cut(s)	385
Hpy8I	GTNNAC	2 cut(s)	81, 340
Hpy99I	CGWCG	2 cut(s)	85, 113
HpyAV	CCTTC	4 cut(s)	134, 181, 337, 445
HpyCH4III	ACNGT	2 cut(s)	506, 748
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	9 cut(s)	29, 39, 234, 247, 315, 610, 716, 758, 788
HpyF10VI	GCNNNNNNNGC	2 cut(s)	312, 573
HpyF3I	CTNAG	1 cut(s)	353
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	3 cut(s)	403, 575, 724
HspAI	GCGC	1 cut(s)	604
KroI	GCCGGC	1 cut(s)	463
KroNI	GCCGGC	1 cut(s)	465
Ksp22I	TGATCA	1 cut(s)	687
Kzo9I	GATC	2 cut(s)	67, 687
LmnI	GCTCC	1 cut(s)	601
Lsp1109I	GCAGC	3 cut(s)	23, 101, 327
LweI	GCATC	1 cut(s)	38
MaeI	CTAG	2 cut(s)	146, 795
MaeII	ACGT	1 cut(s)	198
MalI	GATC	2 cut(s)	69, 689
MboI	GATC	2 cut(s)	67, 687
MboII	GAAGA	7 cut(s)	111, 371, 606, 631, 674, 764, 767
MhlI	GDGCHC	3 cut(s)	155, 195, 517
MlsI	TGGCCA	1 cut(s)	213
MluCI	AATT	6 cut(s)	229, 263, 427, 586, 618, 625
MluNI	TGGCCA	1 cut(s)	213
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	5 cut(s)	81, 130, 230, 372, 516
Mox20I	TGGCCA	1 cut(s)	213
MroNI	GCCGGC	1 cut(s)	463
MscI	TGGCCA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	749
Msp20I	TGGCCA	1 cut(s)	213
MspA1I	CMGCKG	3 cut(s)	36, 92, 667
MspI	CCGG	2 cut(s)	331, 464
Mva1269I	GAATGC	2 cut(s)	234, 421
MwoI	GCNNNNNNNGC	2 cut(s)	312, 573
NaeI	GCCGGC	1 cut(s)	465
NdeII	GATC	2 cut(s)	67, 687
NgoMIV	GCCGGC	1 cut(s)	463
NlaIII	CATG	3 cut(s)	403, 575, 724
NlaIV	GGNNCC	3 cut(s)	359, 417, 514
OliI	CACNNNNGTG	1 cut(s)	749
PctI	GAATGC	2 cut(s)	234, 421
PdiI	GCCGGC	1 cut(s)	465
PfeI	GAWTC	3 cut(s)	167, 280, 562
PkrI	GCNGC	3 cut(s)	38, 91, 317
PspN4I	GGNNCC	3 cut(s)	359, 417, 514
PspPI	GGNCC	2 cut(s)	416, 575
PvuII	CAGCTG	2 cut(s)	36, 92
RsaI	GTAC	3 cut(s)	508, 734, 782
RsaNI	GTAC	3 cut(s)	507, 733, 781
RseI	CAYNNNNRTG	1 cut(s)	749
SalI	GTCGAC	1 cut(s)	79
SatI	GCNGC	3 cut(s)	37, 90, 316
Sau3AI	GATC	2 cut(s)	67, 687
Sau96I	GGNCC	2 cut(s)	416, 575
SduI	GDGCHC	3 cut(s)	155, 195, 517
SfaNI	GCATC	1 cut(s)	38
SinI	GGWCC	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	749
SmlI	CTYRAG	1 cut(s)	492
SmoI	CTYRAG	1 cut(s)	492
Sse9I	AATT	6 cut(s)	229, 263, 427, 586, 618, 625
SsiI	CCGC	4 cut(s)	254, 290, 419, 665
SspMI	CTAG	2 cut(s)	146, 795
TaaI	ACNGT	2 cut(s)	506, 748
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	4 cut(s)	80, 96, 546, 560
TasI	AATT	6 cut(s)	229, 263, 427, 586, 618, 625
TatI	WGTACW	2 cut(s)	732, 780
TfiI	GAWTC	3 cut(s)	167, 280, 562
TseI	GCWGC	3 cut(s)	36, 89, 315
TspDTI	ATGAA	2 cut(s)	416, 635
VpaK11BI	GGWCC	1 cut(s)	416
XapI	RAATTY	2 cut(s)	263, 625
XmiI	GTMKAC	1 cut(s)	80
XspI	CTAG	2 cut(s)	146, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.