AT3G29290

Pentacotripeptide-repeat region of PRORP

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
11238011 .. 11240646
2636 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G29290.3

Sequence Viewer

Length: 1623 bp
ATGGGAGCTGTCTGGTTGAGTCATGTCTCTCAATTGGTTTGTGGATGTTATTTAATTGAGCAGAGCTCTTGTGTTTTGAGAACTTTTCATTGGTCTTTGAGTCACTCATTGAACTTTACATTGACCATGAAGCCTAAACGAAGGCGTCTAGGTGTAAAAATGGAGTCTTTTTCTTTGGCAACACCAAACATGTGTTTCAGGAAGGTGAGTAGTGAATTAGACAGTTCTTTCAACGGTGAAAATGTGGTTTGTGGTTTGGAACTGGAGGAGAAGACTGCAGGGGATAGGAATAGGATACATTTTCTAGAGGAGCGGAACGAAGAAACTTTATCGAAGAGGCTTCGGAAACTTAGCAGGTTGGATAAAGTCAGAAGCGCATTGGAGTTGTTTGATTCTATGAGATTCTTGGGTTTACAACCTAATGCTCATGCCTGTAACTCTTTTCTCTCGTGCCTCTTGAGGAATGGAGATATTCAGAAAGCTTTTACCGTCTTTGAGTTCATGAGGAAAAAGGAGAATGTTACAGGGCACACGTATAGTTTGATGTTGAAAGCTGTTGCAGAAGTTAAGGGTTGCGAGTCTGCATTAAGAATGTTTAGAGAACTAGAAAGGGAGCCGAAACGTAGGAGTTGTTTTGATGTGGTTCTATATAATACTGCGATTTCTCTATGTGGACGGATAAATAATGTGTATGAGACAGAGAGAATATGGAGAGTTATGAAAGGTGATGGTCATATTGGAACAGAGATTACATATTCTCTGCTTGTTAGCATTTTTGTTCGGTGTGGGAGAAGTGAATTGGCCCTTGATGTGTATGATGAGATGGTTAACAACAAGATATCTCTGAGAGAGGATGCAATGTATGCGATGATAAGTGCGTGTACAAAGGAGGAAAAATGGGATTTGGCCTTAAAGATATTTCAGAGTATGTTAAAGAAAGGGATGAAGCCTAATCTTGTAGCTTGCAATACTTTGATAAACTCGCTGGGAAAGGCGGGTAAAGTCGGATTGGTGTTTAAGGTTTACAGTGTTTTAAAATCCTTGGGGCATAAACCAGACGAGTACACGTGGAATGCGCTGCTCACGGCTTTATACAAAGCAAACCGATATGAAGATGTTCTTCAGCTGTTTGATATGATAAGAAGCGAAAACCTGTGTTGTCTAAATGAATATTTGTACAACACAGCTATGGTGTCATGCCAAAAGCTTGGTTATTGGGAGAAAGCTGTGAAGCTTTTGTATGAAATGGAAGGTTCGGGTTTAACAGTTTCAACTTCATCATATAATCTAGTGATAAGCGCTTGCGAAAAATCAAGAAAATCGAAAGTTGCATTGCTAGTATATGAGCACATGGCTCAAAGGGATTGTAAGCCAAACACGTTTACTTATCTTTCGCTTGTAAGGAGTTGTATTTGGGGTTCCCTTTGGGACGAGGTTGAAGATATCCTTAAGAAAGTGGAACCCGATGTATCGCTTTACAATGCAGCTATACATGGGATGTGTTTGAGACGCGAGTTCAAGTTTGCAAAAGAGCTGTATGTCAAAATGAGAGAGATGGGTTTAGAACCGGATGGCAAAACCCGAGCTATGATGTTACAGAATTTGAAGAAACACCAAAAATAA

Protein Analysis

540

Amino Acids

62.06

Weight (kDa)

9.01

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 140 - 187 2.6e-07 PPR repeat family
PPR_long PF17177 268 - 386 2.6e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 272 - 331 2.3e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 289 - 319 1e-05 PPR repeat family
PPR_2 PF13041 317 - 366 2e-11 PPR repeat family
TPR_24 PF23276 322 - 450 1.2e-09 Fungal tetratrico peptide repeats
PPR_3 PF13812 411 - 469 1.7e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 424 - 470 4.5e-09 PPR repeat family
PPR_2 PF13041 488 - 535 7.3e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 345
AccBSI CCGCTC 1 cut(s) 313
AccII CGCG 1 cut(s) 1512
AciI CCGC 2 cut(s) 313, 995
AcsI RAATTY 1 cut(s) 1600
AcuI CTGAAG 1 cut(s) 1106
AcvI CACGTG 1 cut(s) 1068
AcyI GRCGYC 1 cut(s) 145
AfaI GTAC 3 cut(s) 883, 1064, 1178
AfeI AGCGCT 1 cut(s) 1300
AflII CTTAAG 1 cut(s) 1448
AflIII ACRYGT 4 cut(s) 189, 531, 1065, 1377
AgsI TTSAA 7 cut(s) 112, 232, 550, 1272, 1439, 1519, 1606
AjuI GAANNNNNNNTTGG 2 cut(s) 73, 105
Alw21I GWGCWC 2 cut(s) 68, 1350
Alw26I GTCTC 3 cut(s) 31, 689, 1501
Ama87I CYCGRG 1 cut(s) 1581
Aor51HI AGCGCT 1 cut(s) 1300
AoxI GGCC 2 cut(s) 801, 906
ApeKI GCWGC 2 cut(s) 1078, 1484
ApoI RAATTY 1 cut(s) 1600
Asp700I GAANNNNTTC 1 cut(s) 1116
AspLEI GCGC 3 cut(s) 377, 1078, 1301
AspS9I GGNCC 1 cut(s) 802
AsuHPI GGTGA 3 cut(s) 217, 248, 737
AvaI CYCGRG 1 cut(s) 1581
BaeGI GKGCMC 1 cut(s) 531
BanII GRGCYC 1 cut(s) 68
BauI CACGAG 1 cut(s) 448
BbrPI CACGTG 1 cut(s) 1068
BbsI GAAGAC 1 cut(s) 278
Bbv12I GWGCWC 2 cut(s) 68, 1350
BbvI GCAGC 2 cut(s) 1065, 1496
BccI CCATC 4 cut(s) 722, 817, 1549, 1565
BceAI ACGGC 1 cut(s) 1101
BciVI GTATCC 1 cut(s) 288
BcoDI GTCTC 3 cut(s) 31, 689, 1501
BfaI CTAG 5 cut(s) 149, 305, 605, 1289, 1337
BfmI CTRYAG 1 cut(s) 276
BfoI RGCGCY 1 cut(s) 1302
BfrI CTTAAG 1 cut(s) 1448
BfuAI ACCTGC 1 cut(s) 345
BfuI GTATCC 1 cut(s) 288
BisI GCNGC 2 cut(s) 1079, 1485
BlsI GCNGC 2 cut(s) 1080, 1486
BmeT110I CYCGRG 1 cut(s) 1581
BmgT120I GGNCC 1 cut(s) 802
BmiI GGNNCC 3 cut(s) 615, 1420, 1461
BmsI GCATC 1 cut(s) 844
BpiI GAAGAC 1 cut(s) 278
BplI GAGNNNNNCTC 2 cut(s) 50, 82
BpmI CTGGAG 1 cut(s) 284
BpuEI CTTGAG 1 cut(s) 478
BsaAI YACGTR 2 cut(s) 534, 1068
BsaHI GRCGYC 1 cut(s) 145
BsaJI CCNNGG 1 cut(s) 1041
BsaWI WCCGGW 1 cut(s) 1567
Bse1I ACTGG 1 cut(s) 267
Bse3DI GCAATG 2 cut(s) 864, 1331
BseDI CCNNGG 1 cut(s) 1041
BseGI GGATG 5 cut(s) 50, 859, 948, 1503, 1576
BseMI GCAATG 2 cut(s) 864, 1331
BseMII CTCAG 1 cut(s) 836
BseNI ACTGG 1 cut(s) 267
BseRI GAGGAG 2 cut(s) 281, 323
BseSI GKGCMC 1 cut(s) 531
BseXI GCAGC 2 cut(s) 1065, 1496
BseYI CCCAGC 1 cut(s) 985
Bsh1236I CGCG 1 cut(s) 1512
BshFI GGCC 2 cut(s) 803, 908
BsiHKAI GWGCWC 2 cut(s) 68, 1350
BsiHKCI CYCGRG 1 cut(s) 1581
BsiSI CCGG 1 cut(s) 1568
BslFI GGGAC 1 cut(s) 1442
BsmAI GTCTC 3 cut(s) 31, 689, 1501
BsmBI CGTCTC 1 cut(s) 1501
BsmFI GGGAC 1 cut(s) 1442
BsmI GAATGC 1 cut(s) 1078
BsnI GGCC 2 cut(s) 803, 908
BsoBI CYCGRG 1 cut(s) 1581
Bsp1286I GDGCHC 3 cut(s) 68, 531, 1350
Bsp1407I TGTACA 2 cut(s) 881, 1176
BspACI CCGC 2 cut(s) 313, 995
BspANI GGCC 2 cut(s) 803, 908
BspCNI CTCAG 1 cut(s) 837
BspFNI CGCG 1 cut(s) 1512
BspHI TCATGA 1 cut(s) 501
BspLI GGNNCC 3 cut(s) 615, 1420, 1461
BspMAI CTGCAG 1 cut(s) 280
BspMI ACCTGC 1 cut(s) 345
BspTI CTTAAG 1 cut(s) 1448
BsrBI CCGCTC 1 cut(s) 313
BsrDI GCAATG 2 cut(s) 864, 1331
BsrGI TGTACA 2 cut(s) 881, 1176
BsrI ACTGG 1 cut(s) 267
BssECI CCNNGG 1 cut(s) 1041
BssNI GRCGYC 1 cut(s) 145
BssSI CACGAG 1 cut(s) 448
BssT1I CCWWGG 1 cut(s) 1041
Bst2BI CACGAG 1 cut(s) 448
Bst4CI ACNGT 5 cut(s) 224, 236, 490, 1028, 1267
Bst6I CTCTTC 1 cut(s) 329
BstACI GRCGYC 1 cut(s) 145
BstAFI CTTAAG 1 cut(s) 1448
BstAPI GCANNNNNTGC 1 cut(s) 863
BstAUI TGTACA 2 cut(s) 881, 1176
BstBAI YACGTR 2 cut(s) 534, 1068
BstC8I GCNNGC 2 cut(s) 964, 1303
BstDEI CTNAG 2 cut(s) 350, 845
BstF5I GGATG 5 cut(s) 50, 859, 948, 1503, 1576
BstFNI CGCG 1 cut(s) 1512
BstH2I RGCGCY 1 cut(s) 1302
BstHHI GCGC 3 cut(s) 377, 1078, 1301
BstMAI GTCTC 3 cut(s) 31, 689, 1501
BstMWI GCNNNNNNNGC 1 cut(s) 863
BstNSI RCATGY 1 cut(s) 193
BstSFI CTRYAG 1 cut(s) 276
BstSLI GKGCMC 1 cut(s) 531
BstUI CGCG 1 cut(s) 1512
BstV1I GCAGC 2 cut(s) 1065, 1496
BstV2I GAAGAC 1 cut(s) 278
BstXI CCANNNNNNTGG 1 cut(s) 1208
BsuI GTATCC 1 cut(s) 288
BsuRI GGCC 2 cut(s) 803, 908
BtgZI GCGATG 1 cut(s) 881
BtsCI GGATG 5 cut(s) 50, 859, 948, 1503, 1576
BtsIMutI CAGTG 1 cut(s) 1033
BveI ACCTGC 1 cut(s) 345
Cac8I GCNNGC 2 cut(s) 964, 1303
CciI TCATGA 1 cut(s) 501
CfoI GCGC 3 cut(s) 377, 1078, 1301
Cfr13I GGNCC 1 cut(s) 802
CseI GACGC 2 cut(s) 134, 1518
Csp6I GTAC 3 cut(s) 882, 1063, 1177
CviAII CATG 8 cut(s) 23, 127, 190, 428, 502, 1197, 1351, 1493
CviQI GTAC 3 cut(s) 882, 1063, 1177
DdeI CTNAG 2 cut(s) 350, 845
DraI TTTAAA 1 cut(s) 1035
Eam1104I CTCTTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 329
Ecl136II GAGCTC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 1041
Eco24I GRGCYC 1 cut(s) 68
Eco32I GATATC 2 cut(s) 840, 1444
Eco47III AGCGCT 1 cut(s) 1300
Eco53kI GAGCTC 1 cut(s) 66
Eco57I CTGAAG 1 cut(s) 1106
Eco72I CACGTG 1 cut(s) 1068
Eco88I CYCGRG 1 cut(s) 1581
EcoICRI GAGCTC 1 cut(s) 66
EcoRV GATATC 2 cut(s) 840, 1444
EcoT14I CCWWGG 1 cut(s) 1041
EcoT38I GRGCYC 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 1041
Esp3I CGTCTC 1 cut(s) 1501
FaeI CATG 8 cut(s) 26, 130, 193, 431, 505, 1200, 1354, 1496
FalI AAGNNNNNCTT 4 cut(s) 1104, 1136, 1431, 1463
FaqI GGGAC 1 cut(s) 1442
FatI CATG 8 cut(s) 22, 126, 189, 427, 501, 1196, 1350, 1492
FauI CCCGC 1 cut(s) 988
Fnu4HI GCNGC 2 cut(s) 1079, 1485
FokI GGATG 5 cut(s) 57, 866, 955, 1510, 1583
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 2 cut(s) 1079, 1485
FspBI CTAG 5 cut(s) 149, 305, 605, 1289, 1337
GlaI GCGC 3 cut(s) 376, 1077, 1300
GluI GCNGC 2 cut(s) 1079, 1485
GsaI CCCAGC 1 cut(s) 989
GsuI CTGGAG 1 cut(s) 284
HaeII RGCGCY 1 cut(s) 1302
HaeIII GGCC 2 cut(s) 803, 908
HapII CCGG 1 cut(s) 1568
HgaI GACGC 2 cut(s) 134, 1518
HhaI GCGC 3 cut(s) 377, 1078, 1301
Hin1I GRCGYC 1 cut(s) 145
Hin1II CATG 8 cut(s) 26, 130, 193, 431, 505, 1200, 1354, 1496
Hin6I GCGC 3 cut(s) 375, 1076, 1299
HinP1I GCGC 3 cut(s) 375, 1076, 1299
HincII GTYRAC 1 cut(s) 829
HindII GTYRAC 1 cut(s) 829
HindIII AAGCTT 3 cut(s) 480, 1205, 1232
HinfI GANTC 6 cut(s) 19, 100, 164, 392, 402, 578
HpaI GTTAAC 1 cut(s) 829
HpaII CCGG 1 cut(s) 1568
HphI GGTGA 3 cut(s) 217, 248, 737
Hpy166II GTNNAC 7 cut(s) 413, 674, 829, 882, 1024, 1065, 1383
Hpy188I TCNGA 6 cut(s) 345, 371, 477, 846, 924, 1007
Hpy188III TCNNGA 5 cut(s) 199, 305, 457, 502, 1314
Hpy8I GTNNAC 7 cut(s) 413, 674, 829, 882, 1024, 1065, 1383
HpyAV CCTTC 3 cut(s) 135, 196, 1244
HpyCH4III ACNGT 5 cut(s) 224, 236, 490, 1028, 1267
HpyCH4IV ACGT 4 cut(s) 533, 622, 1067, 1379
HpyCH4V TGCA 8 cut(s) 278, 560, 584, 857, 966, 1331, 1484, 1526
HpyF10VI GCNNNNNNNGC 1 cut(s) 863
HpyF3I CTNAG 2 cut(s) 350, 845
HpySE526I ACGT 4 cut(s) 533, 622, 1067, 1379
Hsp92I GRCGYC 1 cut(s) 145
Hsp92II CATG 8 cut(s) 26, 130, 193, 431, 505, 1200, 1354, 1496
HspAI GCGC 3 cut(s) 375, 1076, 1299
KspAI GTTAAC 1 cut(s) 829
LmnI GCTCC 3 cut(s) 5, 310, 613
Lsp1109I GCAGC 2 cut(s) 1065, 1496
LweI GCATC 1 cut(s) 844
MaeI CTAG 5 cut(s) 149, 305, 605, 1289, 1337
MaeII ACGT 4 cut(s) 533, 622, 1067, 1379
MaeIII GTNAC 4 cut(s) 101, 434, 520, 1593
MbiI CCGCTC 1 cut(s) 313
MboII GAAGA 7 cut(s) 283, 332, 346, 1112, 1124, 1451, 1618
MfeI CAATTG 1 cut(s) 32
MhlI GDGCHC 3 cut(s) 68, 531, 1350
MluCI AATT 5 cut(s) 32, 54, 215, 797, 1600
MlyI GAGTC 4 cut(s) 28, 109, 173, 587
MmeI TCCRAC 2 cut(s) 339, 985
MnlI CCTC 9 cut(s) 259, 301, 330, 453, 464, 498, 844, 883, 1426
MroXI GAANNNNTTC 1 cut(s) 1116
MslI CAYNNNNRTG 1 cut(s) 1187
MspA1I CMGCKG 1 cut(s) 1126
MspCI CTTAAG 1 cut(s) 1448
MspI CCGG 1 cut(s) 1568
MunI CAATTG 1 cut(s) 32
Mva1269I GAATGC 1 cut(s) 1078
MvnI CGCG 1 cut(s) 1512
MwoI GCNNNNNNNGC 1 cut(s) 863
NlaIII CATG 8 cut(s) 26, 130, 193, 431, 505, 1200, 1354, 1496
NlaIV GGNNCC 3 cut(s) 615, 1420, 1461
NmuCI GTSAC 1 cut(s) 101
NspI RCATGY 1 cut(s) 193
PagI TCATGA 1 cut(s) 501
PciI ACATGT 1 cut(s) 189
PctI GAATGC 1 cut(s) 1078
PdmI GAANNNNTTC 1 cut(s) 1116
PfeI GAWTC 2 cut(s) 392, 402
PkrI GCNGC 2 cut(s) 1080, 1486
PleI GAGTC 4 cut(s) 27, 108, 172, 586
PmaCI CACGTG 1 cut(s) 1068
PmlI CACGTG 1 cut(s) 1068
PpsI GAGTC 4 cut(s) 27, 108, 172, 586
Ppu21I YACGTR 2 cut(s) 534, 1068
PscI ACATGT 1 cut(s) 189
Psp124BI GAGCTC 1 cut(s) 68
PspCI CACGTG 1 cut(s) 1068
PspFI CCCAGC 1 cut(s) 985
PspN4I GGNNCC 3 cut(s) 615, 1420, 1461
PspPI GGNCC 1 cut(s) 802
PsrI GAACNNNNNNTAC 4 cut(s) 733, 765, 1402, 1434
PstI CTGCAG 1 cut(s) 280
PvuII CAGCTG 1 cut(s) 1126
RsaI GTAC 3 cut(s) 883, 1064, 1178
RsaNI GTAC 3 cut(s) 882, 1063, 1177
RseI CAYNNNNRTG 1 cut(s) 1187
SacI GAGCTC 1 cut(s) 68
SatI GCNGC 2 cut(s) 1079, 1485
Sau96I GGNCC 1 cut(s) 802
SchI GAGTC 4 cut(s) 28, 109, 173, 587
SduI GDGCHC 3 cut(s) 68, 531, 1350
SfaNI GCATC 1 cut(s) 844
SfcI CTRYAG 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 1187
SmlI CTYRAG 2 cut(s) 457, 1448
SmoI CTYRAG 2 cut(s) 457, 1448
Sse9I AATT 5 cut(s) 32, 54, 215, 797, 1600
SsiI CCGC 2 cut(s) 313, 995
SspI AATATT 1 cut(s) 1172
SspMI CTAG 5 cut(s) 149, 305, 605, 1289, 1337
SstI GAGCTC 1 cut(s) 68
StyI CCWWGG 1 cut(s) 1041
TaaI ACNGT 5 cut(s) 224, 236, 490, 1028, 1267
TaiI ACGT 4 cut(s) 536, 625, 1070, 1382
TaqI TCGA 2 cut(s) 332, 1322
TasI AATT 5 cut(s) 32, 54, 215, 797, 1600
TatI WGTACW 3 cut(s) 881, 1062, 1176
TfiI GAWTC 2 cut(s) 392, 402
TscAI CASTG 1 cut(s) 1033
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 2 cut(s) 1078, 1484
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 9 cut(s) 77, 143, 490, 734, 959, 1125, 1182, 1257, 1266
TspGWI ACGGA 1 cut(s) 691
TspRI CASTG 1 cut(s) 1033
Vha464I CTTAAG 1 cut(s) 1448
XapI RAATTY 1 cut(s) 1600
XbaI TCTAGA 1 cut(s) 304
XceI RCATGY 1 cut(s) 193
XmnI GAANNNNTTC 1 cut(s) 1116
XspI CTAG 5 cut(s) 149, 305, 605, 1289, 1337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.