Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007998

Physical Location & Seq

Genomic Coordinates Reverse (-)

80638041 .. 80640435

Gene Structure 2395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG576600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1767 bp

ATGGGTGAGGTTCTGAAACCTTCACTCTCCCTTATGTTAATCTCAACTAGTTCTGGGTTTCGGTATCGCCATTCTAACCAGCCTTTATATTATGATGTGCCTAAAACATGTTCAAGTACACATAACCTTAGCTTAGTTTCCATGTGGGTACCCAGTGTGATTAGAATGAAGGCAAAATCCATGTCTGTGCCAAACGTGGTGCTTGGTGTGCAATCTGGGTTGGTTTGTGAAAAAGAAGAAGATTCTTTGGTTGAGCAGATATTGCCTCCATGGGGAGATTTAGCAATTGATAAGGACCCGGTCCAGCCGGAGATTGAACCGGGGGTTGCCGTCCGGCCAGAGGTGACTTTAAATTGGAAGGATGTGTTGAATGTAGATAGGGTAAGTCTTTTAGAGGAGGTGGATGAAGAGACATTGTCAAAGCGGATTTTGGTGCTTAGTAGAACTAATAAAATTAGGAGTGCGTTGGAGCTGTTTACTTCCATGGAGTTATCAGGTCTTGTTCCTAGTGTACATGCGTGTAATTCACTGTTATCTTGTCTGTTGAGAAATGGTTTTTTTGATAATGGCTTGAGAGTGTTTGAGTTTATGAAGAGAAAGAAGTTAACTACGGGGCATAGTTATAGCCTGATACTTAAAGCAGTTTCAGATGCTCGTGGCTGCGACTCTGCCATTGAAATGTTTAGGGCAATGGAAGGGGAGAGTGGTTTGAGGGATGGTTTTGATACTGTCGTCTATAACACAATGATATCGGTTTGTGGTAAAGTGAACAATTGGCGTGAAACTGAGAGATTGTGGAGAGATATCAAGGAGAATGGTCATACTGGAACACAAGTTACTTATTGCCTCTTAGTTAGCATTTTTGTTCGGTGTGGTGAGCATGAGCTAGCTCTTGATGCTTACAATGAGATGATTGAAAACAAGTTTCAACCAGGGAATGATACAATGCAAGCTATAATTGGTGCTTGCTCAAAGGATGGAAAGTGGGATCTGGCACTAAACATCTTTCAGAATATGTTGGACAGTGGGCTCAAGCCAAATAGAATTGCATTCAATGCATTGATAAATTCGCTTGGAAAGGCTGCGGAGGTTGAACTAGCATTTAGGGTATATAATATCATGAAATCTATGGGTCATTCACCAGATCCTTATACATGGAAGGCATTACTTGGTGCACTTTATAAGGCAAATCGACATGATGATGCTATTAAGCTCTTTGAGAGCATCAAGAGAAGTCGGGGCTCTCAATTGAACTCACACTTGTACAACATGGCTTTGATGTCTTGCTCGAAGCTTGGGCTATGGGATAAATCTCTGCAGCTTTTGTGGCAATTAGAAGCTTCTGATTTGTCAGTTTCGACAGCATCGTATAACCTTGTAATCAGTGCTTGCGAGATGGCAAGGAAGCCCGAAGTGGCATTGCAAGTGTATGAGCACATGGTTCACCAGAAGTGCACCCCAGACACATTTACTCATCTGTCACTAATAAGGAGTTGCATTTGGGGTTCTTTCTGGGAGGAAGTGGAGGAAATCCTGAATCAAGCTGCACCAGATGCATCTCTTTATAACACTGCCATTCAAGGAATGAGCTTTCGAGGCAAAACCGAATTGGCAAAGAAACTTTATACAAATATGCGTAATAGTGGCCTGCAACCAGATGGGAAAACCCGTGCCGTTATGCTGCAAAACTTACGAAGACCTAGGAAGAAGCAGCCTTCTGGTTACAGAACAAGTAGAAGCAAGCTGTCCTCCAATCGCCGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

588

Amino Acids

66.24

Weight (kDa)

8.63

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	242 - 286	1e-07	PPR repeat family
PPR_long	PF17177	251 - 406	4.1e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	278 - 325	7.9e-06	PPR repeat family
PPR_2	PF13041	315 - 358	2.2e-08	PPR repeat family
PPR_3	PF13812	317 - 360	9.6e-07	Pentatricopeptide repeat domain
TPR_24	PF23276	317 - 479	5.6e-11	Fungal tetratrico peptide repeats
PPR_2	PF13041	346 - 395	6.4e-11	PPR repeat family
PPR_2	PF13041	453 - 499	2.2e-08	PPR repeat family
PPR_2	PF13041	517 - 564	5e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29290 AT3G29290 AT3G29290 AT3G29290 AT3G29290
fragaria_vesca	FvH4_6g46090
malus_domestica	MD09G1077000.v1.1
prunus_persica	Prupe.3G247100_v2.0.a1 Prupe.3G247100_v2.0.a1 Prupe.3G247100_v2.0.a1
pyrus_communis	pycom09g00420
rosa_chinensis	RchiOBHm_Chr2g0164431 RchiOBHm_Chr2g0164471
rosa_laevigata	RLG00000021461
rosa_multiflora	Rmu_co8265609.1_g000001 Rmu_sc0037425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086570
rosa_rugosa	Rorug02G0508300
rosa_samantha	Rh2AG576600 Rh2BG587600 Rh2CG558400 Rh2DG598000
rosa_wichuraiana	Rw2G047760 Rw2G047860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1182, 1566
Acc65I	GGTACC	1 cut(s)	148
AccB1I	GGYRCC	1 cut(s)	148
AciI	CCGC	2 cut(s)	424, 1085
AclWI	GGATC	2 cut(s)	996, 1139
AcoI	YGGCCR	1 cut(s)	335
AcsI	RAATTY	1 cut(s)	1066
AfaI	GTAC	4 cut(s)	118, 150, 513, 1265
AfiI	CCNNNNNNNGG	2 cut(s)	272, 340
AflIII	ACRYGT	1 cut(s)	107
AhlI	ACTAGT	1 cut(s)	47
AjnI	CCWGG	1 cut(s)	931
Alw21I	GWGCWC	3 cut(s)	1177, 1437, 1457
Alw26I	GTCTC	1 cut(s)	404
Alw44I	GTGCAC	2 cut(s)	1173, 1453
AlwI	GGATC	2 cut(s)	996, 1139
AoxI	GGCC	2 cut(s)	335, 1645
ApaLI	GTGCAC	2 cut(s)	1173, 1453
ApeKI	GCWGC	6 cut(s)	660, 1082, 1318, 1544, 1681, 1711
ApoI	RAATTY	1 cut(s)	1066
ArsI	GACNNNNNNTTYG	2 cut(s)	167, 199
Asp718I	GGTACC	1 cut(s)	148
AspA2I	CCTAGG	1 cut(s)	1700
AspS9I	GGNCC	2 cut(s)	295, 301
AsuC2I	CCSGG	2 cut(s)	299, 321
AsuHPI	GGTGA	5 cut(s)	17, 355, 887, 1131, 1436
AsuNHI	GCTAGC	1 cut(s)	886
AvaII	GGWCC	2 cut(s)	295, 301
AvrII	CCTAGG	1 cut(s)	1700
BaeGI	GKGCMC	2 cut(s)	1177, 1457
BaeI	ACNNNNGTAYC	2 cut(s)	717, 750
BanI	GGYRCC	1 cut(s)	148
BanII	GRGCYC	2 cut(s)	1032, 1244
BauI	CACGAG	1 cut(s)	654
BbsI	GAAGAC	1 cut(s)	1702
Bbv12I	GWGCWC	3 cut(s)	1177, 1437, 1457
BbvI	GCAGC	6 cut(s)	647, 1069, 1330, 1531, 1668, 1723
BccI	CCATC	4 cut(s)	710, 971, 1390, 1652
BceAI	ACGGC	3 cut(s)	314, 1658, 1743
BciT130I	CCWGG	1 cut(s)	933
BcnI	CCSGG	2 cut(s)	299, 321
BcoDI	GTCTC	1 cut(s)	404
BcuI	ACTAGT	1 cut(s)	47
BfaI	CTAG	5 cut(s)	48, 507, 887, 1097, 1701
BfmI	CTRYAG	1 cut(s)	1316
BisI	GCNGC	6 cut(s)	661, 1083, 1319, 1545, 1682, 1712
BlnI	CCTAGG	1 cut(s)	1700
BlsI	GCNGC	6 cut(s)	662, 1084, 1320, 1546, 1683, 1713
Bme1390I	CCNGG	3 cut(s)	299, 321, 933
Bme18I	GGWCC	2 cut(s)	295, 301
BmgT120I	GGNCC	2 cut(s)	295, 301
BmiI	GGNNCC	2 cut(s)	150, 297
BmrFI	CCNGG	3 cut(s)	299, 321, 933
BmrI	ACTGGG	1 cut(s)	147
BmsI	GCATC	7 cut(s)	640, 886, 1192, 1233, 1373, 1543, 1565
BmtI	GCTAGC	1 cut(s)	890
BmuI	ACTGGG	1 cut(s)	147
BpiI	GAAGAC	1 cut(s)	1702
Bpu10I	CCTNAGC	1 cut(s)	128
BpuEI	CTTGAG	2 cut(s)	592, 1016
BpuMI	CCSGG	2 cut(s)	299, 321
BsaJI	CCNNGG	5 cut(s)	269, 320, 483, 932, 1700
Bsc4I	CCNNNNNNNGG	2 cut(s)	272, 340
Bse1I	ACTGG	2 cut(s)	153, 829
Bse3DI	GCAATG	2 cut(s)	696, 1418
BseBI	CCWGG	1 cut(s)	933
BseDI	CCNNGG	5 cut(s)	269, 320, 483, 932, 1700
BseGI	GGATG	4 cut(s)	367, 409, 721, 982
BseLI	CCNNNNNNNGG	2 cut(s)	272, 340
BseMI	GCAATG	2 cut(s)	696, 1418
BseMII	CTCAG	1 cut(s)	777
BseNI	ACTGG	2 cut(s)	153, 829
BseRI	GAGGAG	1 cut(s)	410
BseSI	GKGCMC	2 cut(s)	1177, 1457
BseXI	GCAGC	6 cut(s)	647, 1069, 1330, 1531, 1668, 1723
BsgI	GTGCAG	1 cut(s)	1530
BshFI	GGCC	2 cut(s)	337, 1647
BshNI	GGYRCC	1 cut(s)	148
BsiHKAI	GWGCWC	3 cut(s)	1177, 1437, 1457
BsiSI	CCGG	4 cut(s)	299, 308, 320, 334
BslI	CCNNNNNNNGG	2 cut(s)	272, 340
BsmAI	GTCTC	1 cut(s)	404
BsmI	GAATGC	1 cut(s)	1049
BsnI	GGCC	2 cut(s)	337, 1647
Bsp1286I	GDGCHC	5 cut(s)	1032, 1177, 1244, 1437, 1457
Bsp1407I	TGTACA	2 cut(s)	511, 1263
Bsp143I	GATC	2 cut(s)	988, 1144
Bsp19I	CCATGG	2 cut(s)	269, 483
BspACI	CCGC	2 cut(s)	424, 1085
BspANI	GGCC	2 cut(s)	337, 1647
BspCNI	CTCAG	1 cut(s)	778
BspHI	TCATGA	1 cut(s)	1119
BspLI	GGNNCC	2 cut(s)	150, 297
BspMAI	CTGCAG	1 cut(s)	1320
BspOI	GCTAGC	1 cut(s)	890
BspPI	GGATC	2 cut(s)	996, 1139
BspT107I	GGYRCC	1 cut(s)	148
BsrDI	GCAATG	2 cut(s)	696, 1418
BsrGI	TGTACA	2 cut(s)	511, 1263
BsrI	ACTGG	2 cut(s)	153, 829
BssECI	CCNNGG	5 cut(s)	269, 320, 483, 932, 1700
BssMI	GATC	2 cut(s)	988, 1144
BssSI	CACGAG	1 cut(s)	654
BssT1I	CCWWGG	3 cut(s)	269, 483, 1700
Bst2BI	CACGAG	1 cut(s)	654
Bst2UI	CCWGG	1 cut(s)	933
Bst4CI	ACNGT	3 cut(s)	531, 730, 1025
Bst6I	CTCTTC	2 cut(s)	402, 587
BstAPI	GCANNNNNTGC	3 cut(s)	262, 1055, 1553
BstAUI	TGTACA	2 cut(s)	511, 1263
BstC8I	GCNNGC	6 cut(s)	888, 951, 967, 1390, 1649, 1742
BstDEI	CTNAG	5 cut(s)	128, 133, 437, 786, 850
BstDSI	CCRYGG	2 cut(s)	269, 483
BstF5I	GGATG	4 cut(s)	367, 409, 721, 982
BstKTI	GATC	2 cut(s)	991, 1147
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	2 cut(s)	988, 1144
BstMWI	GCNNNNNNNGC	7 cut(s)	208, 262, 896, 1055, 1327, 1553, 1596
BstNI	CCWGG	1 cut(s)	933
BstNSI	RCATGY	2 cut(s)	111, 518
BstSCI	CCNGG	3 cut(s)	297, 319, 931
BstSFI	CTRYAG	1 cut(s)	1316
BstSLI	GKGCMC	2 cut(s)	1177, 1457
BstV1I	GCAGC	6 cut(s)	647, 1069, 1330, 1531, 1668, 1723
BstV2I	GAAGAC	1 cut(s)	1702
BstX2I	RGATCY	2 cut(s)	988, 1144
BstYI	RGATCY	2 cut(s)	988, 1144
BsuRI	GGCC	2 cut(s)	337, 1647
BtgI	CCRYGG	2 cut(s)	269, 483
BtsCI	GGATG	4 cut(s)	367, 409, 721, 982
BtsI	GCAGTG	1 cut(s)	1569
BtsIMutI	CAGTG	5 cut(s)	160, 527, 1030, 1390, 1569
Cac8I	GCNNGC	6 cut(s)	888, 951, 967, 1390, 1649, 1742
CciI	TCATGA	1 cut(s)	1119
Cfr13I	GGNCC	2 cut(s)	295, 301
Csp6I	GTAC	4 cut(s)	117, 149, 512, 1264
CviQI	GTAC	4 cut(s)	117, 149, 512, 1264
DdeI	CTNAG	5 cut(s)	128, 133, 437, 786, 850
DpnI	GATC	2 cut(s)	990, 1146
DpnII	GATC	2 cut(s)	988, 1144
DraI	TTTAAA	1 cut(s)	351
EaeI	YGGCCR	1 cut(s)	335
Eam1104I	CTCTTC	2 cut(s)	402, 587
EarI	CTCTTC	2 cut(s)	402, 587
Eco130I	CCWWGG	3 cut(s)	269, 483, 1700
Eco24I	GRGCYC	2 cut(s)	1032, 1244
Eco32I	GATATC	2 cut(s)	750, 805
Eco47I	GGWCC	2 cut(s)	295, 301
EcoO109I	RGGNCCY	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	931
EcoRV	GATATC	2 cut(s)	750, 805
EcoT14I	CCWWGG	3 cut(s)	269, 483, 1700
EcoT22I	ATGCAT	2 cut(s)	1060, 1558
EcoT38I	GRGCYC	2 cut(s)	1032, 1244
ErhI	CCWWGG	3 cut(s)	269, 483, 1700
Fnu4HI	GCNGC	6 cut(s)	661, 1083, 1319, 1545, 1682, 1712
FokI	GGATG	4 cut(s)	374, 416, 728, 989
FriOI	GRGCYC	2 cut(s)	1032, 1244
Fsp4HI	GCNGC	6 cut(s)	661, 1083, 1319, 1545, 1682, 1712
FspBI	CTAG	5 cut(s)	48, 507, 887, 1097, 1701
GluI	GCNGC	6 cut(s)	661, 1083, 1319, 1545, 1682, 1712
HaeIII	GGCC	2 cut(s)	337, 1647
HapII	CCGG	4 cut(s)	299, 308, 320, 334
HincII	GTYRAC	1 cut(s)	606
HindII	GTYRAC	1 cut(s)	606
HindIII	AAGCTT	2 cut(s)	1292, 1338
HinfI	GANTC	3 cut(s)	242, 665, 1537
HpaI	GTTAAC	1 cut(s)	606
HpaII	CCGG	4 cut(s)	299, 308, 320, 334
HphI	GGTGA	5 cut(s)	17, 355, 887, 1131, 1436
Hpy166II	GTNNAC	8 cut(s)	119, 477, 512, 606, 769, 1175, 1444, 1455
Hpy188I	TCNGA	4 cut(s)	15, 649, 1011, 1345
Hpy188III	TCNNGA	4 cut(s)	893, 1120, 1228, 1534
Hpy8I	GTNNAC	8 cut(s)	119, 477, 512, 606, 769, 1175, 1444, 1455
HpyAV	CCTTC	6 cut(s)	30, 163, 352, 689, 1153, 1725
HpyCH4III	ACNGT	3 cut(s)	531, 730, 1025
HpyCH4IV	ACGT	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	7 cut(s)	208, 262, 896, 1055, 1327, 1553, 1596
HpyF3I	CTNAG	5 cut(s)	128, 133, 437, 786, 850
HpySE526I	ACGT	1 cut(s)	195
KpnI	GGTACC	1 cut(s)	152
KspAI	GTTAAC	1 cut(s)	606
Kzo9I	GATC	2 cut(s)	988, 1144
LmnI	GCTCC	1 cut(s)	469
Lsp1109I	GCAGC	6 cut(s)	647, 1069, 1330, 1531, 1668, 1723
LweI	GCATC	7 cut(s)	640, 886, 1192, 1233, 1373, 1543, 1565
MaeI	CTAG	5 cut(s)	48, 507, 887, 1097, 1701
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	5 cut(s)	343, 835, 1479, 1721, 1760
MalI	GATC	2 cut(s)	990, 1146
MboI	GATC	2 cut(s)	988, 1144
MboII	GAAGA	6 cut(s)	248, 251, 419, 604, 1707, 1717
MfeI	CAATTG	3 cut(s)	285, 772, 1247
MflI	RGATCY	2 cut(s)	988, 1144
MhlI	GDGCHC	5 cut(s)	1032, 1177, 1244, 1437, 1457
MlyI	GAGTC	1 cut(s)	659
MmeI	TCCRAC	2 cut(s)	447, 999
Mph1103I	ATGCAT	2 cut(s)	1060, 1558
MseI	TTAA	5 cut(s)	38, 350, 605, 636, 1209
MslI	CAYNNNNRTG	3 cut(s)	185, 677, 1200
MspI	CCGG	4 cut(s)	299, 308, 320, 334
MspR9I	CCNGG	3 cut(s)	299, 321, 933
MunI	CAATTG	3 cut(s)	285, 772, 1247
Mva1269I	GAATGC	1 cut(s)	1049
MvaI	CCWGG	1 cut(s)	933
MwoI	GCNNNNNNNGC	7 cut(s)	208, 262, 896, 1055, 1327, 1553, 1596
NciI	CCSGG	2 cut(s)	299, 321
NcoI	CCATGG	2 cut(s)	269, 483
NdeII	GATC	2 cut(s)	988, 1144
NheI	GCTAGC	1 cut(s)	886
NlaIV	GGNNCC	2 cut(s)	150, 297
NmuCI	GTSAC	2 cut(s)	343, 1479
NsiI	ATGCAT	2 cut(s)	1060, 1558
NspI	RCATGY	2 cut(s)	111, 518
PagI	TCATGA	1 cut(s)	1119
PciI	ACATGT	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	1364
PctI	GAATGC	1 cut(s)	1049
PfeI	GAWTC	2 cut(s)	242, 1537
PflFI	GACNNNGTC	2 cut(s)	299, 415
PkrI	GCNGC	6 cut(s)	662, 1084, 1320, 1546, 1683, 1713
PleI	GAGTC	1 cut(s)	659
PpsI	GAGTC	1 cut(s)	659
PpuMI	RGGWCCY	1 cut(s)	295
PscI	ACATGT	1 cut(s)	107
PsiI	TTATAA	2 cut(s)	1182, 1566
Psp5II	RGGWCCY	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	931
PspGI	CCWGG	1 cut(s)	931
PspN4I	GGNNCC	2 cut(s)	150, 297
PspPI	GGNCC	2 cut(s)	295, 301
PspPPI	RGGWCCY	1 cut(s)	295
PsrI	GAACNNNNNNTAC	2 cut(s)	820, 852
PstI	CTGCAG	1 cut(s)	1320
PsuI	RGATCY	2 cut(s)	988, 1144
PsyI	GACNNNGTC	2 cut(s)	299, 415
RsaI	GTAC	4 cut(s)	118, 150, 513, 1265
RsaNI	GTAC	4 cut(s)	117, 149, 512, 1264
RseI	CAYNNNNRTG	3 cut(s)	185, 677, 1200
SaqAI	TTAA	5 cut(s)	38, 350, 605, 636, 1209
SatI	GCNGC	6 cut(s)	661, 1083, 1319, 1545, 1682, 1712
Sau3AI	GATC	2 cut(s)	988, 1144
Sau96I	GGNCC	2 cut(s)	295, 301
SchI	GAGTC	1 cut(s)	659
ScrFI	CCNGG	3 cut(s)	299, 321, 933
SduI	GDGCHC	5 cut(s)	1032, 1177, 1244, 1437, 1457
SfaNI	GCATC	7 cut(s)	640, 886, 1192, 1233, 1373, 1543, 1565
SfcI	CTRYAG	1 cut(s)	1316
SinI	GGWCC	2 cut(s)	295, 301
SmiMI	CAYNNNNRTG	3 cut(s)	185, 677, 1200
SmlI	CTYRAG	2 cut(s)	571, 1031
SmoI	CTYRAG	2 cut(s)	571, 1031
SpeI	ACTAGT	1 cut(s)	47
SsiI	CCGC	2 cut(s)	424, 1085
SspMI	CTAG	5 cut(s)	48, 507, 887, 1097, 1701
StyD4I	CCNGG	3 cut(s)	297, 319, 931
StyI	CCWWGG	3 cut(s)	269, 483, 1700
TaaI	ACNGT	3 cut(s)	531, 730, 1025
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	4 cut(s)	1192, 1289, 1358, 1594
TatI	WGTACW	3 cut(s)	116, 511, 1263
TfiI	GAWTC	2 cut(s)	242, 1537
Tru1I	TTAA	5 cut(s)	38, 350, 605, 636, 1209
Tru9I	TTAA	5 cut(s)	38, 350, 605, 636, 1209
TscAI	CASTG	5 cut(s)	160, 534, 1030, 1390, 1576
TseFI	GTSAC	2 cut(s)	343, 1479
TseI	GCWGC	6 cut(s)	660, 1082, 1318, 1544, 1681, 1711
Tsp45I	GTSAC	2 cut(s)	343, 1479
TspDTI	ATGAA	4 cut(s)	182, 420, 605, 1136
TspRI	CASTG	5 cut(s)	160, 534, 1030, 1390, 1576
Tth111I	GACNNNGTC	2 cut(s)	299, 415
VneI	GTGCAC	2 cut(s)	1173, 1453
VpaK11BI	GGWCC	2 cut(s)	295, 301
XapI	RAATTY	1 cut(s)	1066
XceI	RCATGY	2 cut(s)	111, 518
XmaJI	CCTAGG	1 cut(s)	1700
XspI	CTAG	5 cut(s)	48, 507, 887, 1097, 1701
Zsp2I	ATGCAT	2 cut(s)	1060, 1558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.