Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0007998

Physical Location & Seq

Genomic Coordinates Forward (+)

5425071 .. 5427700

Gene Structure 2630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1077000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1791 bp

ATGGGGGAGGTGATGAGGGTTTCAGTTTCCATAGTGATTAATGCAAATGGGTTTAATCTCCAACACAAACCATGTAGTCCAACGAGTTGTAACCGTAAAATCGGCTTTCGGCTTTCTCAAAAGTGCTTAGTTTCCATGTGGTTGCCCAATTTGTTGTTGCCAAGGAAGGCGAAATCTCTGACATTGCAGAACATGGTGGCTGGTGTGCAATCTGAGTTGGTTTGTGAGGAAAAGGAAGAAGATAAATTGATTCGAAACCGGGGATATGGTGATGATGCTGCTTTTGTTAAGCAAAAATTGCCTCCTTGGGGAGAGTTGGAATTTGACAAGGACTTGGATGTAGAACCTGAGGTTGTGATCCAGCCCAAGTCGAATTTGAACAGGAAGGCTACATTGAATGTGGACAGGGTTGGTTATCTGGAGGAGATGGATGAAGAAACATTATCGAAGCGGATTTTGGTGCTTAGTAGAACAAATAAGACTCGAAGTGCGTTGGAACTGTTTACTTCCATGGAACTATCAGGCCTTCTTCCTAATTTACATGCTTGTAATTCGCTGTTGTCTTGCCTCTTGAGAAACGGGTTGCTTGATGACGGTTTGAGGGTTTTTGAGTTTATGAAGAGAAAGAAGTTGACCACGGGGCATAGTTATAGCTTGCTACTTAAGGCAGTTTCTGTTGTTGAGGGCTGTGACTCTGCTATCGAAATGTTTTTGGCAATGGAAGAGGAAAGCGAAGCAAGAGATGCTTTTGATACCATCGTCTATAACACTATGATATCGATTTGTGGTAAAGTGAACAATTGGCGTGAAACCGAGAGATTGTGGAGAAGTATTAAGGACAATGACCATGCTGGAACACGAGTTACTTATTGCCTCTTAGTTAGCATTTTTGTTCGTTGTGGCCAGCATGAGCTAGCTCTTGATGCTTACGATGAAATGATTCAAAATAATTTTGAACCAGGGGATGATACAATGCACGCTATCATCGGTGCATGCTCAAAAGACGGAAAGTGGGATATTGCGCTAAACATCTTCGATAATATGTTGAACAGTGGACTCAAGCCAAATCCAGTTGCATTCAATGCATTGATAAATTCACTTGGGAAAGCTGGGGAGGTTGAACTAGCATTCAAGGTATATAACATCATGAAATCTTTGGGTCATTCACCCGACACTTACACATGGAATGCATTACTTGGTGCACTGTATAGAGCAAATCGACACGGTGAAGCTCTTAAGCTTTATGAGAGTATCAAGACAAGTCAGGGCTCTCAGTTAAACTCGCATTTGTACAATACGGCTTTAATGTCTTGTTCGAAGCTCGGTCTATGGGATAAAGCTTTAAAGCTTTTATGGCAACTAGAAGCTTCAGGGCAGTCAGTTTCTACTGCGTCATATAATCTTGTAATCGGTGCTTGTGAGAGAGCAAGGAAACCTGAAGTTGCGCTGCAAGTTTACGAGCACATGGTTCACCAGAAATGCACCGCAGACACATTTACTTATCTGTCACTAATACGAGGTTGCATTTGGGGTTCTCTCTGGGATGAAGTCGAGGAAATCCTTAACTGTGCTGCACCAGATGCGTCGCTCTATAACGCTGTCATTCAAGGAATGTGCTTACGAGGCAAAACAGAACTAGCAAAGAAGCTTTACACGAAGATGCGCGAGAGCGGTCTGCAACCCGATGGGAAAACCCGGGCTATGATGTTGCAAAATTTGCAGAGACGGAAGAAGAAGCCGCAGCCTTCTCGTTACAAAACAAGTAACAAGTTTTCTTATTATCGCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

597

Amino Acids

67.18

Weight (kDa)

8.41

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	286 - 381	1e-06	Fungal tetratrico peptide repeats
PPR_long	PF17177	305 - 418	1.8e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	311 - 369	9.8e-07	Pentatricopeptide repeat domain
TPR_24	PF23276	326 - 489	2e-11	Fungal tetratrico peptide repeats
PPR_3	PF13812	344 - 401	3.6e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	352 - 384	2.1e-07	PPR repeat
PPR_2	PF13041	355 - 402	1.6e-13	PPR repeat family
PPR	PF01535	358 - 387	5.5e-06	PPR repeat
PPR_2	PF13041	462 - 508	1.5e-09	PPR repeat family
PPR_2	PF13041	526 - 572	3e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29290 AT3G29290 AT3G29290 AT3G29290 AT3G29290
fragaria_vesca	FvH4_6g46090
malus_domestica	MD09G1077000.v1.1
prunus_persica	Prupe.3G247100_v2.0.a1 Prupe.3G247100_v2.0.a1 Prupe.3G247100_v2.0.a1
pyrus_communis	pycom09g00420
rosa_chinensis	RchiOBHm_Chr2g0164431 RchiOBHm_Chr2g0164471
rosa_laevigata	RLG00000021461
rosa_multiflora	Rmu_co8265609.1_g000001 Rmu_sc0037425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086570
rosa_rugosa	Rorug02G0508300
rosa_samantha	Rh2AG576600 Rh2BG587600 Rh2CG558400 Rh2DG598000
rosa_wichuraiana	Rw2G047760 Rw2G047860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1671
AccII	CGCG	1 cut(s)	1665
AciI	CCGC	4 cut(s)	451, 1485, 1671, 1739
AclWI	GGATC	1 cut(s)	352
AcoI	YGGCCR	1 cut(s)	901
AcsI	RAATTY	4 cut(s)	320, 373, 1093, 1714
AcuI	CTGAAG	2 cut(s)	1353, 1458
AfaI	GTAC	1 cut(s)	1292
AfiI	CCNNNNNNNGG	1 cut(s)	308
AflII	CTTAAG	2 cut(s)	662, 1235
AgsI	TTSAA	9 cut(s)	379, 397, 944, 956, 1048, 1081, 1121, 1132, 1607
AjnI	CCWGG	1 cut(s)	958
AjuI	GAANNNNNNNTTGG	2 cut(s)	440, 472
Alw21I	GWGCWC	2 cut(s)	1204, 1464
Alw26I	GTCTC	1 cut(s)	1717
Alw44I	GTGCAC	1 cut(s)	1200
AlwI	GGATC	1 cut(s)	352
AlwNI	CAGNNNCTG	1 cut(s)	674
Ama87I	CYCGRG	1 cut(s)	1695
AoxI	GGCC	2 cut(s)	523, 901
ApaLI	GTGCAC	1 cut(s)	1200
ApeKI	GCWGC	4 cut(s)	278, 1447, 1571, 1741
ApoI	RAATTY	4 cut(s)	320, 373, 1093, 1714
AseI	ATTAAT	1 cut(s)	39
Asp700I	GAANNNNTTC	1 cut(s)	939
AspLEI	GCGC	3 cut(s)	1024, 1447, 1665
AsuC2I	CCSGG	3 cut(s)	260, 1696, 1697
AsuHPI	GGTGA	5 cut(s)	22, 281, 1158, 1238, 1463
AsuII	TTCGAA	2 cut(s)	253, 1316
AsuNHI	GCTAGC	1 cut(s)	913
AvaI	CYCGRG	1 cut(s)	1695
AxyI	CCTNAGG	1 cut(s)	348
BaeGI	GKGCMC	1 cut(s)	1204
BaeI	ACNNNNGTAYC	2 cut(s)	744, 777
BalI	TGGCCA	1 cut(s)	903
BanII	GRGCYC	1 cut(s)	1271
BauI	CACGAG	1 cut(s)	858
Bbv12I	GWGCWC	2 cut(s)	1204, 1464
BbvI	GCAGC	4 cut(s)	265, 1434, 1558, 1753
BccI	CCATC	3 cut(s)	421, 764, 1679
BceAI	ACGGC	1 cut(s)	1314
BcgI	CGANNNNNNTGC	2 cut(s)	1730, 1764
BciT130I	CCWGG	1 cut(s)	960
BcnI	CCSGG	3 cut(s)	260, 1696, 1697
BcoDI	GTCTC	1 cut(s)	1717
BfaI	CTAG	4 cut(s)	914, 1124, 1361, 1637
BfrI	CTTAAG	2 cut(s)	662, 1235
BisI	GCNGC	5 cut(s)	279, 1448, 1572, 1739, 1742
BlsI	GCNGC	5 cut(s)	280, 1449, 1573, 1740, 1743
Bme1390I	CCNGG	4 cut(s)	260, 960, 1696, 1697
BmeT110I	CYCGRG	1 cut(s)	1695
BmrFI	CCNGG	4 cut(s)	260, 960, 1696, 1697
BmsI	GCATC	5 cut(s)	265, 733, 913, 1570, 1650
BmtI	GCTAGC	1 cut(s)	917
BpmI	CTGGAG	1 cut(s)	440
Bpu14I	TTCGAA	2 cut(s)	253, 1316
BpuEI	CTTGAG	2 cut(s)	592, 1043
BpuMI	CCSGG	3 cut(s)	260, 1696, 1697
Bsa29I	ATCGAT	1 cut(s)	779
BsaJI	CCNNGG	7 cut(s)	161, 259, 305, 510, 636, 959, 1695
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	1070
Bse21I	CCTNAGG	1 cut(s)	348
Bse3DI	GCAATG	2 cut(s)	182, 723
BseBI	CCWGG	1 cut(s)	960
BseCI	ATCGAT	1 cut(s)	779
BseDI	CCNNGG	7 cut(s)	161, 259, 305, 510, 636, 959, 1695
BseGI	GGATG	4 cut(s)	343, 436, 970, 1549
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMI	GCAATG	2 cut(s)	182, 723
BseMII	CTCAG	3 cut(s)	204, 339, 1286
BseNI	ACTGG	1 cut(s)	1070
BseRI	GAGGAG	1 cut(s)	437
BseSI	GKGCMC	1 cut(s)	1204
BseXI	GCAGC	4 cut(s)	265, 1434, 1558, 1753
BseYI	CCCAGC	1 cut(s)	1109
BsgI	GTGCAG	1 cut(s)	1557
Bsh1236I	CGCG	1 cut(s)	1665
BshFI	GGCC	2 cut(s)	525, 903
BshVI	ATCGAT	1 cut(s)	779
BsiHKAI	GWGCWC	2 cut(s)	1204, 1464
BsiHKCI	CYCGRG	1 cut(s)	1695
BsiSI	CCGG	2 cut(s)	259, 1696
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmAI	GTCTC	1 cut(s)	1717
BsmBI	CGTCTC	1 cut(s)	1717
BsmI	GAATGC	3 cut(s)	1076, 1127, 1192
BsnI	GGCC	2 cut(s)	525, 903
BsoBI	CYCGRG	1 cut(s)	1695
Bsp119I	TTCGAA	2 cut(s)	253, 1316
Bsp1286I	GDGCHC	3 cut(s)	1204, 1271, 1464
Bsp1407I	TGTACA	1 cut(s)	1290
Bsp143I	GATC	1 cut(s)	357
Bsp19I	CCATGG	1 cut(s)	510
BspACI	CCGC	4 cut(s)	451, 1485, 1671, 1739
BspANI	GGCC	2 cut(s)	525, 903
BspCNI	CTCAG	3 cut(s)	205, 340, 1285
BspDI	ATCGAT	1 cut(s)	779
BspFNI	CGCG	1 cut(s)	1665
BspHI	TCATGA	1 cut(s)	1146
BspOI	GCTAGC	1 cut(s)	917
BspPI	GGATC	1 cut(s)	352
BspT104I	TTCGAA	2 cut(s)	253, 1316
BspTI	CTTAAG	2 cut(s)	662, 1235
BsrBI	CCGCTC	1 cut(s)	1671
BsrDI	GCAATG	2 cut(s)	182, 723
BsrGI	TGTACA	1 cut(s)	1290
BsrI	ACTGG	1 cut(s)	1070
BssECI	CCNNGG	7 cut(s)	161, 259, 305, 510, 636, 959, 1695
BssMI	GATC	1 cut(s)	357
BssSI	CACGAG	1 cut(s)	858
BssT1I	CCWWGG	3 cut(s)	161, 305, 510
Bst2BI	CACGAG	1 cut(s)	858
Bst2UI	CCWGG	1 cut(s)	960
Bst4CI	ACNGT	7 cut(s)	95, 501, 596, 1052, 1206, 1226, 1568
Bst6I	CTCTTC	2 cut(s)	614, 717
BstAFI	CTTAAG	2 cut(s)	662, 1235
BstAPI	GCANNNNNTGC	5 cut(s)	298, 743, 1082, 1580, 1717
BstAUI	TGTACA	1 cut(s)	1290
BstBI	TTCGAA	2 cut(s)	253, 1316
BstC8I	GCNNGC	5 cut(s)	656, 905, 915, 978, 994
BstDEI	CTNAG	6 cut(s)	127, 213, 348, 464, 877, 1272
BstDSI	CCRYGG	2 cut(s)	510, 636
BstF5I	GGATG	4 cut(s)	343, 436, 970, 1549
BstFNI	CGCG	1 cut(s)	1665
BstHHI	GCGC	3 cut(s)	1024, 1447, 1665
BstKTI	GATC	1 cut(s)	360
BstMAI	GTCTC	1 cut(s)	1717
BstMBI	GATC	1 cut(s)	357
BstMWI	GCNNNNNNNGC	8 cut(s)	298, 743, 923, 1082, 1354, 1580, 1623, 1717
BstNI	CCWGG	1 cut(s)	960
BstNSI	RCATGY	2 cut(s)	545, 996
BstSCI	CCNGG	4 cut(s)	258, 958, 1694, 1695
BstSLI	GKGCMC	1 cut(s)	1204
BstUI	CGCG	1 cut(s)	1665
BstV1I	GCAGC	4 cut(s)	265, 1434, 1558, 1753
Bsu15I	ATCGAT	1 cut(s)	779
Bsu36I	CCTNAGG	1 cut(s)	348
BsuRI	GGCC	2 cut(s)	525, 903
BsuTUI	ATCGAT	1 cut(s)	779
BtgI	CCRYGG	2 cut(s)	510, 636
BtsCI	GGATG	4 cut(s)	343, 436, 970, 1549
BtsIMutI	CAGTG	2 cut(s)	1057, 1202
Cac8I	GCNNGC	5 cut(s)	656, 905, 915, 978, 994
CaiI	CAGNNNCTG	1 cut(s)	674
CciI	TCATGA	1 cut(s)	1146
CfoI	GCGC	3 cut(s)	1024, 1447, 1665
Cfr9I	CCCGGG	1 cut(s)	1695
ClaI	ATCGAT	1 cut(s)	779
CseI	GACGC	2 cut(s)	1380, 1572
Csp6I	GTAC	1 cut(s)	1291
CviQI	GTAC	1 cut(s)	1291
DdeI	CTNAG	6 cut(s)	127, 213, 348, 464, 877, 1272
DpnI	GATC	1 cut(s)	359
DpnII	GATC	1 cut(s)	357
DraI	TTTAAA	1 cut(s)	1344
EaeI	YGGCCR	1 cut(s)	901
Eam1104I	CTCTTC	2 cut(s)	614, 717
EarI	CTCTTC	2 cut(s)	614, 717
Eco130I	CCWWGG	3 cut(s)	161, 305, 510
Eco147I	AGGCCT	1 cut(s)	525
Eco24I	GRGCYC	1 cut(s)	1271
Eco32I	GATATC	1 cut(s)	777
Eco57I	CTGAAG	2 cut(s)	1353, 1458
Eco81I	CCTNAGG	1 cut(s)	348
Eco88I	CYCGRG	1 cut(s)	1695
EcoRII	CCWGG	1 cut(s)	958
EcoRV	GATATC	1 cut(s)	777
EcoT14I	CCWWGG	3 cut(s)	161, 305, 510
EcoT22I	ATGCAT	2 cut(s)	1087, 1192
EcoT38I	GRGCYC	1 cut(s)	1271
ErhI	CCWWGG	3 cut(s)	161, 305, 510
Esp3I	CGTCTC	1 cut(s)	1717
FalI	AAGNNNNNCTT	2 cut(s)	730, 762
Fnu4HI	GCNGC	5 cut(s)	279, 1448, 1572, 1739, 1742
FokI	GGATG	4 cut(s)	350, 443, 977, 1556
FriOI	GRGCYC	1 cut(s)	1271
Fsp4HI	GCNGC	5 cut(s)	279, 1448, 1572, 1739, 1742
FspBI	CTAG	4 cut(s)	914, 1124, 1361, 1637
GlaI	GCGC	3 cut(s)	1023, 1446, 1664
GluI	GCNGC	5 cut(s)	279, 1448, 1572, 1739, 1742
GsaI	CCCAGC	1 cut(s)	1113
GsuI	CTGGAG	1 cut(s)	440
HaeIII	GGCC	2 cut(s)	525, 903
HapII	CCGG	2 cut(s)	259, 1696
HgaI	GACGC	2 cut(s)	1380, 1572
HhaI	GCGC	3 cut(s)	1024, 1447, 1665
Hin6I	GCGC	3 cut(s)	1022, 1445, 1663
HinP1I	GCGC	3 cut(s)	1022, 1445, 1663
HincII	GTYRAC	1 cut(s)	633
HindII	GTYRAC	1 cut(s)	633
HindIII	AAGCTT	5 cut(s)	1238, 1338, 1346, 1365, 1646
HinfI	GANTC	5 cut(s)	250, 481, 692, 940, 1056
HpaII	CCGG	2 cut(s)	259, 1696
HphI	GGTGA	5 cut(s)	22, 281, 1158, 1238, 1463
Hpy166II	GTNNAC	8 cut(s)	403, 504, 633, 796, 1055, 1202, 1456, 1471
Hpy188I	TCNGA	2 cut(s)	180, 214
Hpy188III	TCNNGA	5 cut(s)	419, 571, 920, 1147, 1255
Hpy8I	GTNNAC	8 cut(s)	403, 504, 633, 796, 1055, 1202, 1456, 1471
Hpy99I	CGWCG	1 cut(s)	1588
HpyAV	CCTTC	4 cut(s)	160, 379, 536, 1755
HpyCH4III	ACNGT	7 cut(s)	95, 501, 596, 1052, 1206, 1226, 1568
HpyF10VI	GCNNNNNNNGC	8 cut(s)	298, 743, 923, 1082, 1354, 1580, 1623, 1717
HpyF3I	CTNAG	6 cut(s)	127, 213, 348, 464, 877, 1272
HspAI	GCGC	3 cut(s)	1022, 1445, 1663
Kzo9I	GATC	1 cut(s)	357
Lsp1109I	GCAGC	4 cut(s)	265, 1434, 1558, 1753
LweI	GCATC	5 cut(s)	265, 733, 913, 1570, 1650
MaeI	CTAG	4 cut(s)	914, 1124, 1361, 1637
MaeIII	GTNAC	6 cut(s)	89, 689, 862, 1506, 1751, 1763
MalI	GATC	1 cut(s)	359
MbiI	CCGCTC	1 cut(s)	1671
MboI	GATC	1 cut(s)	357
MfeI	CAATTG	1 cut(s)	799
MhlI	GDGCHC	3 cut(s)	1204, 1271, 1464
MlsI	TGGCCA	1 cut(s)	903
MluNI	TGGCCA	1 cut(s)	903
MlyI	GAGTC	3 cut(s)	475, 686, 1050
MmeI	TCCRAC	4 cut(s)	85, 104, 297, 474
Mox20I	TGGCCA	1 cut(s)	903
Mph1103I	ATGCAT	2 cut(s)	1087, 1192
MroXI	GAANNNNTTC	1 cut(s)	939
MscI	TGGCCA	1 cut(s)	903
MslI	CAYNNNNRTG	1 cut(s)	1658
Msp20I	TGGCCA	1 cut(s)	903
MspCI	CTTAAG	2 cut(s)	662, 1235
MspI	CCGG	2 cut(s)	259, 1696
MspR9I	CCNGG	4 cut(s)	260, 960, 1696, 1697
MunI	CAATTG	1 cut(s)	799
Mva1269I	GAATGC	3 cut(s)	1076, 1127, 1192
MvaI	CCWGG	1 cut(s)	960
MvnI	CGCG	1 cut(s)	1665
MwoI	GCNNNNNNNGC	8 cut(s)	298, 743, 923, 1082, 1354, 1580, 1623, 1717
NciI	CCSGG	3 cut(s)	260, 1696, 1697
NcoI	CCATGG	1 cut(s)	510
NdeII	GATC	1 cut(s)	357
NheI	GCTAGC	1 cut(s)	913
NmuCI	GTSAC	2 cut(s)	689, 1506
NsiI	ATGCAT	2 cut(s)	1087, 1192
NspI	RCATGY	2 cut(s)	545, 996
NspV	TTCGAA	2 cut(s)	253, 1316
PaeI	GCATGC	1 cut(s)	996
PagI	TCATGA	1 cut(s)	1146
PceI	AGGCCT	1 cut(s)	525
PctI	GAATGC	3 cut(s)	1076, 1127, 1192
PdmI	GAANNNNTTC	1 cut(s)	939
PfeI	GAWTC	2 cut(s)	250, 940
PkrI	GCNGC	5 cut(s)	280, 1449, 1573, 1740, 1743
PleI	GAGTC	3 cut(s)	475, 686, 1050
PpsI	GAGTC	3 cut(s)	475, 686, 1050
PshBI	ATTAAT	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	958
PspFI	CCCAGC	1 cut(s)	1109
PspGI	CCWGG	1 cut(s)	958
PsrI	GAACNNNNNNTAC	2 cut(s)	847, 879
PstNI	CAGNNNCTG	1 cut(s)	674
RsaI	GTAC	1 cut(s)	1292
RsaNI	GTAC	1 cut(s)	1291
RseI	CAYNNNNRTG	1 cut(s)	1658
SatI	GCNGC	5 cut(s)	279, 1448, 1572, 1739, 1742
Sau3AI	GATC	1 cut(s)	357
SchI	GAGTC	3 cut(s)	475, 686, 1050
ScrFI	CCNGG	4 cut(s)	260, 960, 1696, 1697
SduI	GDGCHC	3 cut(s)	1204, 1271, 1464
SfaNI	GCATC	5 cut(s)	265, 733, 913, 1570, 1650
SfuI	TTCGAA	2 cut(s)	253, 1316
SmaI	CCCGGG	1 cut(s)	1697
SmiMI	CAYNNNNRTG	1 cut(s)	1658
SmlI	CTYRAG	4 cut(s)	571, 662, 1058, 1235
SmoI	CTYRAG	4 cut(s)	571, 662, 1058, 1235
SphI	GCATGC	1 cut(s)	996
SseBI	AGGCCT	1 cut(s)	525
SsiI	CCGC	4 cut(s)	451, 1485, 1671, 1739
SspMI	CTAG	4 cut(s)	914, 1124, 1361, 1637
StuI	AGGCCT	1 cut(s)	525
StyD4I	CCNGG	4 cut(s)	258, 958, 1694, 1695
StyI	CCWWGG	3 cut(s)	161, 305, 510
TaaI	ACNGT	7 cut(s)	95, 501, 596, 1052, 1206, 1226, 1568
TaqII	GACCGA	1 cut(s)	1313
TatI	WGTACW	1 cut(s)	1290
TauI	GCSGC	1 cut(s)	1741
TfiI	GAWTC	2 cut(s)	250, 940
TscAI	CASTG	2 cut(s)	1057, 1209
TseFI	GTSAC	2 cut(s)	689, 1506
TseI	GCWGC	4 cut(s)	278, 1447, 1571, 1741
Tsp45I	GTSAC	2 cut(s)	689, 1506
TspDTI	ATGAA	5 cut(s)	447, 632, 948, 1163, 1560
TspGWI	ACGGA	2 cut(s)	1020, 1741
TspMI	CCCGGG	1 cut(s)	1695
TspRI	CASTG	2 cut(s)	1057, 1209
Vha464I	CTTAAG	2 cut(s)	662, 1235
VneI	GTGCAC	1 cut(s)	1200
VspI	ATTAAT	1 cut(s)	39
XapI	RAATTY	4 cut(s)	320, 373, 1093, 1714
XceI	RCATGY	2 cut(s)	545, 996
XmaI	CCCGGG	1 cut(s)	1695
XmnI	GAANNNNTTC	1 cut(s)	939
XspI	CTAG	4 cut(s)	914, 1124, 1361, 1637
Zsp2I	ATGCAT	2 cut(s)	1087, 1192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.