Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007998

Physical Location & Seq

Genomic Coordinates Reverse (-)

79565575 .. 79566526

Gene Structure 952 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53252

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGGTGAGGTTCTGAAACCTTCACTCTCCCTTATGTTAATCTCAACTAGTTCTGGGTTTCGGTATCGCCATTCTAACCAGCCTTTATATTATGATGTGCCTAAAACATGTTCAAGTACACATAACCTTAGCTTAGTTTCCATGTGGGTACCCAGTGTGATTAGAATGAAGGCGAAATCCATGTCTGTGCCAAACGTGGTGCTTGGTGTGCAATCTGGGTTGGTTTGTGAAAAAGAAGAAGATTCTTTGGTTGAGCAGATATTGCCTCCATGGGGAGATTTAGCAATTGATAAGGACCCGGTCCAGCCGGAGATTGAACCGGGGGTTGCCGTCCGGCCAGAGGTGACTTTAAATTGGAAGGATGTGTTGAATGTAGATAGGGTAAGTTTTTTAGAGGAGGTGGATGAAGAGACATTGTCAAAGCGGATTTTGGTGCTGAGTAGAACTAATAAAATTAGGAGTGCGTTGGAGCTGTTTACTTCCATGGAGTTATCAGGTCTTGTTCCTAGTTTACATGCGTGTAATTCACTGTTATCTTGTCTGTTGAGAAATGGGTTTTTTGATAATGGCTTGAGAGTGTTTGAGTTTATGAAGAGAAAGAAGTTAACTACGGGGCATAGTTATAGCCTGATACTTAAAGCAGTTTCAGATGCTCGTGGCTGCAACTCTGCCATTGAAATGTTTAGGGCAATGGAAGGGGAGAGTGGTGAACAATTGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

240

Amino Acids

26.71

Weight (kDa)

5.88

Isoelectric Point (pI)

48.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29290 AT3G29290 AT3G29290 AT3G29290 AT3G29290
fragaria_vesca	FvH4_6g46090
malus_domestica	MD09G1077000.v1.1
prunus_persica	Prupe.3G247100_v2.0.a1 Prupe.3G247100_v2.0.a1 Prupe.3G247100_v2.0.a1
pyrus_communis	pycom09g00420
rosa_chinensis	RchiOBHm_Chr2g0164431 RchiOBHm_Chr2g0164471
rosa_laevigata	RLG00000021461
rosa_multiflora	Rmu_co8265609.1_g000001 Rmu_sc0037425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086570
rosa_rugosa	Rorug02G0508300
rosa_samantha	Rh2AG576600 Rh2BG587600 Rh2CG558400 Rh2DG598000
rosa_wichuraiana	Rw2G047760 Rw2G047860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	148
AccB1I	GGYRCC	1 cut(s)	148
AciI	CCGC	1 cut(s)	424
AcoI	YGGCCR	1 cut(s)	335
AfaI	GTAC	2 cut(s)	118, 150
AfiI	CCNNNNNNNGG	2 cut(s)	272, 340
AflIII	ACRYGT	1 cut(s)	107
AgsI	TTSAA	4 cut(s)	114, 317, 370, 677
AhlI	ACTAGT	1 cut(s)	47
AluBI	AGCT	2 cut(s)	132, 472
AluI	AGCT	2 cut(s)	132, 472
Alw26I	GTCTC	1 cut(s)	404
AoxI	GGCC	1 cut(s)	335
ApeKI	GCWGC	1 cut(s)	660
ArsI	GACNNNNNNTTYG	2 cut(s)	167, 199
Asp718I	GGTACC	1 cut(s)	148
AspS9I	GGNCC	2 cut(s)	295, 301
AsuC2I	CCSGG	2 cut(s)	299, 321
AsuHPI	GGTGA	3 cut(s)	17, 355, 719
AvaII	GGWCC	2 cut(s)	295, 301
BanI	GGYRCC	1 cut(s)	148
BauI	CACGAG	1 cut(s)	654
BbvI	GCAGC	1 cut(s)	647
BceAI	ACGGC	1 cut(s)	314
BcnI	CCSGG	2 cut(s)	299, 321
BcoDI	GTCTC	1 cut(s)	404
BcuI	ACTAGT	1 cut(s)	47
BfaI	CTAG	2 cut(s)	48, 507
BisI	GCNGC	1 cut(s)	661
BlsI	GCNGC	1 cut(s)	662
Bme1390I	CCNGG	2 cut(s)	299, 321
Bme18I	GGWCC	2 cut(s)	295, 301
BmgT120I	GGNCC	2 cut(s)	295, 301
BmiI	GGNNCC	2 cut(s)	150, 297
BmrFI	CCNGG	2 cut(s)	299, 321
BmrI	ACTGGG	1 cut(s)	147
BmsI	GCATC	1 cut(s)	640
BmuI	ACTGGG	1 cut(s)	147
Bpu10I	CCTNAGC	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	592
BpuMI	CCSGG	2 cut(s)	299, 321
BsaJI	CCNNGG	3 cut(s)	269, 320, 483
Bsc4I	CCNNNNNNNGG	2 cut(s)	272, 340
Bse1I	ACTGG	1 cut(s)	153
Bse3DI	GCAATG	1 cut(s)	696
BseDI	CCNNGG	3 cut(s)	269, 320, 483
BseGI	GGATG	2 cut(s)	367, 409
BseLI	CCNNNNNNNGG	2 cut(s)	272, 340
BseMI	GCAATG	1 cut(s)	696
BseMII	CTCAG	1 cut(s)	428
BseNI	ACTGG	1 cut(s)	153
BseRI	GAGGAG	1 cut(s)	410
BseXI	GCAGC	1 cut(s)	647
BshFI	GGCC	1 cut(s)	337
BshNI	GGYRCC	1 cut(s)	148
BsiSI	CCGG	4 cut(s)	299, 308, 320, 334
BslI	CCNNNNNNNGG	2 cut(s)	272, 340
BsmAI	GTCTC	1 cut(s)	404
BsnI	GGCC	1 cut(s)	337
Bsp19I	CCATGG	2 cut(s)	269, 483
BspACI	CCGC	1 cut(s)	424
BspANI	GGCC	1 cut(s)	337
BspCNI	CTCAG	1 cut(s)	429
BspLI	GGNNCC	2 cut(s)	150, 297
BspT107I	GGYRCC	1 cut(s)	148
BsrDI	GCAATG	1 cut(s)	696
BsrI	ACTGG	1 cut(s)	153
BssECI	CCNNGG	3 cut(s)	269, 320, 483
BssSI	CACGAG	1 cut(s)	654
BssT1I	CCWWGG	2 cut(s)	269, 483
Bst2BI	CACGAG	1 cut(s)	654
Bst4CI	ACNGT	1 cut(s)	531
Bst6I	CTCTTC	2 cut(s)	402, 587
BstAPI	GCANNNNNTGC	1 cut(s)	262
BstDEI	CTNAG	3 cut(s)	128, 133, 437
BstDSI	CCRYGG	2 cut(s)	269, 483
BstF5I	GGATG	2 cut(s)	367, 409
BstMAI	GTCTC	1 cut(s)	404
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 262
BstNSI	RCATGY	2 cut(s)	111, 518
BstSCI	CCNGG	2 cut(s)	297, 319
BstV1I	GCAGC	1 cut(s)	647
BsuRI	GGCC	1 cut(s)	337
BtgI	CCRYGG	2 cut(s)	269, 483
BtsCI	GGATG	2 cut(s)	367, 409
BtsIMutI	CAGTG	2 cut(s)	160, 527
Cfr13I	GGNCC	2 cut(s)	295, 301
Csp6I	GTAC	2 cut(s)	117, 149
CviAII	CATG	6 cut(s)	108, 142, 181, 270, 484, 515
CviJI	RGCY	8 cut(s)	82, 132, 307, 337, 472, 570, 627, 660
CviKI_1	RGCY	8 cut(s)	82, 132, 307, 337, 472, 570, 627, 660
CviQI	GTAC	2 cut(s)	117, 149
DdeI	CTNAG	3 cut(s)	128, 133, 437
DraI	TTTAAA	1 cut(s)	351
EaeI	YGGCCR	1 cut(s)	335
Eam1104I	CTCTTC	2 cut(s)	402, 587
EarI	CTCTTC	2 cut(s)	402, 587
Eco130I	CCWWGG	2 cut(s)	269, 483
Eco47I	GGWCC	2 cut(s)	295, 301
EcoO109I	RGGNCCY	1 cut(s)	295
EcoT14I	CCWWGG	2 cut(s)	269, 483
ErhI	CCWWGG	2 cut(s)	269, 483
FaeI	CATG	6 cut(s)	111, 145, 184, 273, 487, 518
FatI	CATG	6 cut(s)	107, 141, 180, 269, 483, 514
Fnu4HI	GCNGC	1 cut(s)	661
FokI	GGATG	2 cut(s)	374, 416
Fsp4HI	GCNGC	1 cut(s)	661
FspBI	CTAG	2 cut(s)	48, 507
GluI	GCNGC	1 cut(s)	661
HaeIII	GGCC	1 cut(s)	337
HapII	CCGG	4 cut(s)	299, 308, 320, 334
Hin1II	CATG	6 cut(s)	111, 145, 184, 273, 487, 518
HincII	GTYRAC	1 cut(s)	606
HindII	GTYRAC	1 cut(s)	606
HinfI	GANTC	1 cut(s)	242
HpaI	GTTAAC	1 cut(s)	606
HpaII	CCGG	4 cut(s)	299, 308, 320, 334
HphI	GGTGA	3 cut(s)	17, 355, 719
Hpy166II	GTNNAC	5 cut(s)	119, 477, 512, 606, 710
Hpy188I	TCNGA	2 cut(s)	15, 649
Hpy8I	GTNNAC	5 cut(s)	119, 477, 512, 606, 710
HpyAV	CCTTC	4 cut(s)	30, 163, 352, 689
HpyCH4III	ACNGT	1 cut(s)	531
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	2 cut(s)	211, 663
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 262
HpyF3I	CTNAG	3 cut(s)	128, 133, 437
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	6 cut(s)	111, 145, 184, 273, 487, 518
KpnI	GGTACC	1 cut(s)	152
KspAI	GTTAAC	1 cut(s)	606
LmnI	GCTCC	1 cut(s)	469
Lsp1109I	GCAGC	1 cut(s)	647
LweI	GCATC	1 cut(s)	640
MaeI	CTAG	2 cut(s)	48, 507
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	343
MboII	GAAGA	4 cut(s)	248, 251, 419, 604
MfeI	CAATTG	2 cut(s)	285, 713
MluCI	AATT	5 cut(s)	285, 352, 453, 523, 713
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	4 cut(s)	276, 334, 388, 391
MseI	TTAA	4 cut(s)	38, 350, 605, 636
MslI	CAYNNNNRTG	2 cut(s)	185, 677
MspI	CCGG	4 cut(s)	299, 308, 320, 334
MspR9I	CCNGG	2 cut(s)	299, 321
MunI	CAATTG	2 cut(s)	285, 713
MwoI	GCNNNNNNNGC	2 cut(s)	208, 262
NciI	CCSGG	2 cut(s)	299, 321
NcoI	CCATGG	2 cut(s)	269, 483
NlaIII	CATG	6 cut(s)	111, 145, 184, 273, 487, 518
NlaIV	GGNNCC	2 cut(s)	150, 297
NmuCI	GTSAC	1 cut(s)	343
NspI	RCATGY	2 cut(s)	111, 518
PciI	ACATGT	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	242
PflFI	GACNNNGTC	2 cut(s)	299, 415
PkrI	GCNGC	1 cut(s)	662
PpuMI	RGGWCCY	1 cut(s)	295
PscI	ACATGT	1 cut(s)	107
Psp5II	RGGWCCY	1 cut(s)	295
PspN4I	GGNNCC	2 cut(s)	150, 297
PspPI	GGNCC	2 cut(s)	295, 301
PspPPI	RGGWCCY	1 cut(s)	295
PsyI	GACNNNGTC	2 cut(s)	299, 415
RsaI	GTAC	2 cut(s)	118, 150
RsaNI	GTAC	2 cut(s)	117, 149
RseI	CAYNNNNRTG	2 cut(s)	185, 677
SaqAI	TTAA	4 cut(s)	38, 350, 605, 636
SatI	GCNGC	1 cut(s)	661
Sau96I	GGNCC	2 cut(s)	295, 301
ScrFI	CCNGG	2 cut(s)	299, 321
SetI	ASST	9 cut(s)	12, 22, 129, 134, 198, 345, 402, 474, 499
SfaNI	GCATC	1 cut(s)	640
SinI	GGWCC	2 cut(s)	295, 301
SmiMI	CAYNNNNRTG	2 cut(s)	185, 677
SmlI	CTYRAG	1 cut(s)	571
SmoI	CTYRAG	1 cut(s)	571
SpeI	ACTAGT	1 cut(s)	47
Sse9I	AATT	5 cut(s)	285, 352, 453, 523, 713
SsiI	CCGC	1 cut(s)	424
SspMI	CTAG	2 cut(s)	48, 507
StyD4I	CCNGG	2 cut(s)	297, 319
StyI	CCWWGG	2 cut(s)	269, 483
TaaI	ACNGT	1 cut(s)	531
TaiI	ACGT	1 cut(s)	198
TasI	AATT	5 cut(s)	285, 352, 453, 523, 713
TatI	WGTACW	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	4 cut(s)	38, 350, 605, 636
Tru9I	TTAA	4 cut(s)	38, 350, 605, 636
TscAI	CASTG	2 cut(s)	160, 534
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	1 cut(s)	660
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	3 cut(s)	182, 420, 605
TspRI	CASTG	2 cut(s)	160, 534
Tth111I	GACNNNGTC	2 cut(s)	299, 415
VpaK11BI	GGWCC	2 cut(s)	295, 301
XceI	RCATGY	2 cut(s)	111, 518
XspI	CTAG	2 cut(s)	48, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.