Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007998

Physical Location & Seq

Genomic Coordinates Reverse (-)

23801204 .. 23804039

Gene Structure 2836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G247100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1806 bp

ATGGGGGAGGTCATGAGGGTTTCAGTTTCCATAGTGATTATGTCAAATGGGTTTCATTTCCAACATAAACCATTTAACCCAAATAGTTCTGTGCATAAAATTGGTTATCGGCATTCTCGTCAGTGTTTAGTTTCTATGTGGTTACCCAATATGCTGCCAATAAATTTGACAAGTGCATGTACAAGGAAGGCAAAATCTCTGACTTTACCAAACATGGTGGCTGGTGTCCAATCTGGTTTGGTTTGTGAAGAAGAGGAAGAAGATAAAGTGGTTCAAAGAGAAGGAGGCTATGAAGCTTCTTTTGTTAAGCAGACATTGCCTCCATGGGGAGAGTTGGCAATTGACGAGGACTTGGATTTTGAACCTGAGGTTCCCATTCAGCCCGAATCATGTTTAAAAAGGAAGGCTTCATTGAATGTAAATAGGGTAAGCTTTTTAGAGGAGATGGATGAAGGAACGTTATCAAAGCGAATTTTGGTGCTTAGTAGAACAAACAAAACTAGAAGTGCATTGGAACTGTTTACTTCCATGGAACTATCAGGTCTGCTTCCTAATTTACATGCATGTAATTCATTATTATCTTGCCTTTTGAGAAATGAGTTACTTGATGATGGCTTGAGAGTGTTTGAATTTATGAAGAGAAAGAAGCTAGCCACAGGGCATACTTATAGTTTAATACTGAAAGCAGTTTCGGTTGCTGAGGGCTGCAGCTCTGCCATTGAAATGTTTGTGGCAATGGAAGAGGAAAGTGAAGTGAGGGACAGTTTTGATACCATCGTCTATAACACAATGATATCAATTTGTGGTAAAGTGAACAATTGGCGTGAAACTGAGAGATTATGGAGACATATTAAGGAGAATGGCCTTACTGGAACACGAGTTACTTATTGCCTCTTAGTTAGCATTTTTGTTCGTTGTAGTCAGCACGAACTAGCTCTTGATGCTTACAATGAAATGATTCAAAACAAATTTGAACCTGGGAATGATACAATGCATGCTATCATTGGTGCATGCTCAAAGGACGGAAAGTGGGATCTTGCGCTAAACATCTTTCAAAGTATGTTGGACAGTGGGCTCAAGCCAAATGCAGTTGCATTGAATGCATTGATAAATTCACTTGGAAAGGCTGGGGAGGTTGAACTAGCATTCAGGGTATATAATATCATGAAATCTTTGGGTCATTCACCCGATGCTTACACATGGAATGCGTTACTTGGTGCATTGTATAGGGCAAATCGACATGATGATGCCCTTAGGCTTTATGAGAGTATCAAGACAAGTCAGGGCTCTCAGCTGAACTCACATTTGTACAATATGGCTTTAATGTCATGCTCAAAGCTCGGACTATGGGATAAAGCTCTGAAGCTTTTGTGGCAATTAGAAGCTTCGGGGCAGTCAGTTTCAACTGCATCATATAATCTTGTAGTCAGTGCATGTGAGAAGGCAAGAAAACCTAAAGTGGCATTGCAAGTTTATGAGCACATGGTTCACCAGAAGTGCACCCCAGACATATTTACTTATCTATCACTAATAAGGGGTTGCATTTGGGGTTCTCTATGGGATGAAGTGGAGGAAATTCTGAATTGGGCTGCACCAGATATGTCTCTTTATAATGCTGCCATTCAAGGAATGTGCTTAAGAGGCAAAATTGAATTAGCAAAGAAGATTTACACGAAGATGCGCGAGAACGGTCTGCAACCAGATGGGAAAACACGGGCTATGATGCTGCAAAACTTACAAAGACGTAAGAAGAAGCAGCCTCCTCGATACAAAACAAGTAGCAAGTCTCACAGAAAGATAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

602

Amino Acids

67.82

Weight (kDa)

8.62

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29290 AT3G29290 AT3G29290 AT3G29290 AT3G29290
fragaria_vesca	FvH4_6g46090
malus_domestica	MD09G1077000.v1.1
prunus_persica	Prupe.3G247100_v2.0.a1 Prupe.3G247100_v2.0.a1 Prupe.3G247100_v2.0.a1
pyrus_communis	pycom09g00420
rosa_chinensis	RchiOBHm_Chr2g0164431 RchiOBHm_Chr2g0164471
rosa_laevigata	RLG00000021461
rosa_multiflora	Rmu_co8265609.1_g000001 Rmu_sc0037425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086570
rosa_rugosa	Rorug02G0508300
rosa_samantha	Rh2AG576600 Rh2BG587600 Rh2CG558400 Rh2DG598000
rosa_wichuraiana	Rw2G047760 Rw2G047860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1611
AccII	CGCG	1 cut(s)	1683
AclI	AACGTT	1 cut(s)	458
AclWI	GGATC	1 cut(s)	1041
AcsI	RAATTY	6 cut(s)	163, 471, 629, 968, 1111, 1575
AcuI	CTGAAG	1 cut(s)	1382
AfaI	GTAC	2 cut(s)	181, 1310
AfiI	CCNNNNNNNGG	1 cut(s)	326
AflII	CTTAAG	1 cut(s)	1636
AjnI	CCWGG	1 cut(s)	976
Alw21I	GWGCWC	2 cut(s)	1482, 1502
Alw26I	GTCTC	3 cut(s)	838, 1608, 1791
Alw44I	GTGCAC	1 cut(s)	1498
AlwI	GGATC	1 cut(s)	1041
AoxI	GGCC	1 cut(s)	862
ApaLI	GTGCAC	1 cut(s)	1498
ApeKI	GCWGC	7 cut(s)	154, 705, 708, 1589, 1616, 1726, 1756
ApoI	RAATTY	6 cut(s)	163, 471, 629, 968, 1111, 1575
ArsI	GACNNNNNNTTYG	2 cut(s)	341, 373
Asp700I	GAANNNNTTC	1 cut(s)	957
AspLEI	GCGC	2 cut(s)	1042, 1683
AsuHPI	GGTGA	2 cut(s)	1176, 1481
AsuNHI	GCTAGC	1 cut(s)	649
AxyI	CCTNAGG	2 cut(s)	366, 1253
BaeGI	GKGCMC	1 cut(s)	1502
BaeI	ACNNNNGTAYC	2 cut(s)	762, 795
BanII	GRGCYC	2 cut(s)	1077, 1289
BauI	CACGAG	1 cut(s)	876
Bbv12I	GWGCWC	2 cut(s)	1482, 1502
BbvCI	CCTCAGC	1 cut(s)	699
BbvI	GCAGC	7 cut(s)	141, 692, 720, 1576, 1603, 1713, 1768
BccI	CCATC	4 cut(s)	439, 605, 782, 1697
BcgI	CGANNNNNNTGC	2 cut(s)	1745, 1779
BciT130I	CCWGG	1 cut(s)	978
BcoDI	GTCTC	3 cut(s)	838, 1608, 1791
BfaI	CTAG	4 cut(s)	501, 650, 932, 1142
BfmI	CTRYAG	1 cut(s)	706
BfrI	CTTAAG	1 cut(s)	1636
BisI	GCNGC	7 cut(s)	155, 706, 709, 1590, 1617, 1727, 1757
BlsI	GCNGC	7 cut(s)	156, 707, 710, 1591, 1618, 1728, 1758
Bme1390I	CCNGG	1 cut(s)	978
BmiI	GGNNCC	1 cut(s)	372
BmrFI	CCNGG	1 cut(s)	978
BmsI	GCATC	6 cut(s)	931, 1180, 1237, 1418, 1668, 1713
BmtI	GCTAGC	1 cut(s)	653
Bpu10I	CCTNAGC	1 cut(s)	699
BpuEI	CTTGAG	2 cut(s)	637, 1061
BsaJI	CCNNGG	3 cut(s)	323, 528, 977
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
Bse1I	ACTGG	1 cut(s)	874
Bse21I	CCTNAGG	2 cut(s)	366, 1253
Bse3DI	GCAATG	3 cut(s)	314, 741, 1463
BseBI	CCWGG	1 cut(s)	978
BseDI	CCNNGG	3 cut(s)	323, 528, 977
BseGI	GGATG	2 cut(s)	454, 1567
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseMI	GCAATG	3 cut(s)	314, 741, 1463
BseMII	CTCAG	4 cut(s)	357, 690, 822, 1304
BseNI	ACTGG	1 cut(s)	874
BseRI	GAGGAG	2 cut(s)	455, 1752
BseSI	GKGCMC	1 cut(s)	1502
BseXI	GCAGC	7 cut(s)	141, 692, 720, 1576, 1603, 1713, 1768
BseYI	CCCAGC	1 cut(s)	1127
BsgI	GTGCAG	1 cut(s)	1575
Bsh1236I	CGCG	1 cut(s)	1683
BshFI	GGCC	1 cut(s)	864
BsiHKAI	GWGCWC	2 cut(s)	1482, 1502
BslFI	GGGAC	1 cut(s)	773
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmAI	GTCTC	3 cut(s)	838, 1608, 1791
BsmFI	GGGAC	1 cut(s)	773
BsmI	GAATGC	4 cut(s)	112, 1105, 1145, 1210
BsnI	GGCC	1 cut(s)	864
Bsp1286I	GDGCHC	4 cut(s)	1077, 1289, 1482, 1502
Bsp1407I	TGTACA	2 cut(s)	179, 1308
Bsp143I	GATC	1 cut(s)	1033
Bsp19I	CCATGG	2 cut(s)	323, 528
BspANI	GGCC	1 cut(s)	864
BspCNI	CTCAG	4 cut(s)	358, 691, 823, 1303
BspFNI	CGCG	1 cut(s)	1683
BspHI	TCATGA	2 cut(s)	12, 1164
BspLI	GGNNCC	1 cut(s)	372
BspMAI	CTGCAG	1 cut(s)	710
BspOI	GCTAGC	1 cut(s)	653
BspPI	GGATC	1 cut(s)	1041
BspTI	CTTAAG	1 cut(s)	1636
BsrDI	GCAATG	3 cut(s)	314, 741, 1463
BsrGI	TGTACA	2 cut(s)	179, 1308
BsrI	ACTGG	1 cut(s)	874
BssECI	CCNNGG	3 cut(s)	323, 528, 977
BssMI	GATC	1 cut(s)	1033
BssSI	CACGAG	1 cut(s)	876
BssT1I	CCWWGG	2 cut(s)	323, 528
Bst2BI	CACGAG	1 cut(s)	876
Bst2UI	CCWGG	1 cut(s)	978
Bst4CI	ACNGT	4 cut(s)	519, 764, 1070, 1691
Bst6I	CTCTTC	3 cut(s)	246, 632, 735
BstAFI	CTTAAG	1 cut(s)	1636
BstAPI	GCANNNNNTGC	2 cut(s)	316, 1100
BstAUI	TGTACA	2 cut(s)	179, 1308
BstC8I	GCNNGC	3 cut(s)	651, 996, 1012
BstDEI	CTNAG	7 cut(s)	366, 482, 699, 831, 895, 1253, 1290
BstDSI	CCRYGG	2 cut(s)	323, 528
BstEII	GGTNACC	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	454, 1567
BstFNI	CGCG	1 cut(s)	1683
BstHHI	GCGC	2 cut(s)	1042, 1683
BstKTI	GATC	1 cut(s)	1036
BstMAI	GTCTC	3 cut(s)	838, 1608, 1791
BstMBI	GATC	1 cut(s)	1033
BstMWI	GCNNNNNNNGC	5 cut(s)	316, 941, 1100, 1372, 1641
BstNI	CCWGG	1 cut(s)	978
BstNSI	RCATGY	6 cut(s)	180, 563, 567, 998, 1014, 1437
BstPI	GGTNACC	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	976
BstSFI	CTRYAG	1 cut(s)	706
BstSLI	GKGCMC	1 cut(s)	1502
BstUI	CGCG	1 cut(s)	1683
BstV1I	GCAGC	7 cut(s)	141, 692, 720, 1576, 1603, 1713, 1768
BstX2I	RGATCY	1 cut(s)	1033
BstYI	RGATCY	1 cut(s)	1033
Bsu36I	CCTNAGG	2 cut(s)	366, 1253
BsuRI	GGCC	1 cut(s)	864
BtgI	CCRYGG	2 cut(s)	323, 528
BtsCI	GGATG	2 cut(s)	454, 1567
BtsIMutI	CAGTG	3 cut(s)	128, 1075, 1435
Cac8I	GCNNGC	3 cut(s)	651, 996, 1012
CciI	TCATGA	2 cut(s)	12, 1164
CfoI	GCGC	2 cut(s)	1042, 1683
Csp6I	GTAC	2 cut(s)	180, 1309
CspCI	CAANNNNNGTGG	2 cut(s)	198, 233
CviQI	GTAC	2 cut(s)	180, 1309
DdeI	CTNAG	7 cut(s)	366, 482, 699, 831, 895, 1253, 1290
DpnI	GATC	1 cut(s)	1035
DpnII	GATC	1 cut(s)	1033
DraI	TTTAAA	1 cut(s)	396
Eam1104I	CTCTTC	3 cut(s)	246, 632, 735
EarI	CTCTTC	3 cut(s)	246, 632, 735
Eco130I	CCWWGG	2 cut(s)	323, 528
Eco24I	GRGCYC	2 cut(s)	1077, 1289
Eco32I	GATATC	1 cut(s)	795
Eco57I	CTGAAG	1 cut(s)	1382
Eco81I	CCTNAGG	2 cut(s)	366, 1253
Eco91I	GGTNACC	1 cut(s)	141
EcoO65I	GGTNACC	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	976
EcoRV	GATATC	1 cut(s)	795
EcoT14I	CCWWGG	2 cut(s)	323, 528
EcoT22I	ATGCAT	3 cut(s)	565, 996, 1105
EcoT38I	GRGCYC	2 cut(s)	1077, 1289
ErhI	CCWWGG	2 cut(s)	323, 528
FalI	AAGNNNNNCTT	2 cut(s)	391, 423
FaqI	GGGAC	1 cut(s)	773
Fnu4HI	GCNGC	7 cut(s)	155, 706, 709, 1590, 1617, 1727, 1757
FokI	GGATG	2 cut(s)	461, 1574
FriOI	GRGCYC	2 cut(s)	1077, 1289
Fsp4HI	GCNGC	7 cut(s)	155, 706, 709, 1590, 1617, 1727, 1757
FspBI	CTAG	4 cut(s)	501, 650, 932, 1142
GlaI	GCGC	2 cut(s)	1041, 1682
GluI	GCNGC	7 cut(s)	155, 706, 709, 1590, 1617, 1727, 1757
GsaI	CCCAGC	1 cut(s)	1131
HaeIII	GGCC	1 cut(s)	864
HhaI	GCGC	2 cut(s)	1042, 1683
Hin6I	GCGC	2 cut(s)	1040, 1681
HinP1I	GCGC	2 cut(s)	1040, 1681
HindIII	AAGCTT	4 cut(s)	294, 430, 1364, 1383
HinfI	GANTC	2 cut(s)	386, 958
HphI	GGTGA	2 cut(s)	1176, 1481
Hpy166II	GTNNAC	4 cut(s)	522, 814, 1489, 1500
Hpy188I	TCNGA	4 cut(s)	201, 1343, 1362, 1581
Hpy188III	TCNNGA	4 cut(s)	13, 938, 1165, 1273
Hpy8I	GTNNAC	4 cut(s)	522, 814, 1489, 1500
HpyAV	CCTTC	5 cut(s)	181, 275, 397, 446, 1435
HpyCH4III	ACNGT	4 cut(s)	519, 764, 1070, 1691
HpyCH4IV	ACGT	2 cut(s)	458, 1744
HpyF10VI	GCNNNNNNNGC	5 cut(s)	316, 941, 1100, 1372, 1641
HpyF3I	CTNAG	7 cut(s)	366, 482, 699, 831, 895, 1253, 1290
HpySE526I	ACGT	2 cut(s)	458, 1744
HspAI	GCGC	2 cut(s)	1040, 1681
Kzo9I	GATC	1 cut(s)	1033
Lsp1109I	GCAGC	7 cut(s)	141, 692, 720, 1576, 1603, 1713, 1768
LweI	GCATC	6 cut(s)	931, 1180, 1237, 1418, 1668, 1713
MaeI	CTAG	4 cut(s)	501, 650, 932, 1142
MaeII	ACGT	2 cut(s)	458, 1744
MaeIII	GTNAC	4 cut(s)	141, 600, 880, 1209
MalI	GATC	1 cut(s)	1035
MboI	GATC	1 cut(s)	1033
MboII	GAAGA	9 cut(s)	260, 263, 269, 272, 649, 752, 1675, 1687, 1762
MfeI	CAATTG	2 cut(s)	339, 817
MflI	RGATCY	1 cut(s)	1033
MhlI	GDGCHC	4 cut(s)	1077, 1289, 1482, 1502
MmeI	TCCRAC	2 cut(s)	85, 1044
Mph1103I	ATGCAT	3 cut(s)	565, 996, 1105
MroXI	GAANNNNTTC	1 cut(s)	957
MseI	TTAA	7 cut(s)	75, 306, 395, 674, 852, 1322, 1637
MslI	CAYNNNNRTG	3 cut(s)	722, 1245, 1676
MspA1I	CMGCKG	1 cut(s)	1294
MspCI	CTTAAG	1 cut(s)	1636
MspR9I	CCNGG	1 cut(s)	978
MunI	CAATTG	2 cut(s)	339, 817
Mva1269I	GAATGC	4 cut(s)	112, 1105, 1145, 1210
MvaI	CCWGG	1 cut(s)	978
MvnI	CGCG	1 cut(s)	1683
MwoI	GCNNNNNNNGC	5 cut(s)	316, 941, 1100, 1372, 1641
NcoI	CCATGG	2 cut(s)	323, 528
NdeII	GATC	1 cut(s)	1033
NheI	GCTAGC	1 cut(s)	649
NlaIV	GGNNCC	1 cut(s)	372
NsiI	ATGCAT	3 cut(s)	565, 996, 1105
NspI	RCATGY	6 cut(s)	180, 563, 567, 998, 1014, 1437
PaeI	GCATGC	2 cut(s)	998, 1014
PagI	TCATGA	2 cut(s)	12, 1164
PcsI	WCGNNNNNNNCGW	1 cut(s)	115
PctI	GAATGC	4 cut(s)	112, 1105, 1145, 1210
PdmI	GAANNNNTTC	1 cut(s)	957
PfeI	GAWTC	2 cut(s)	386, 958
PkrI	GCNGC	7 cut(s)	156, 707, 710, 1591, 1618, 1728, 1758
PsiI	TTATAA	1 cut(s)	1611
Psp1406I	AACGTT	1 cut(s)	458
Psp6I	CCWGG	1 cut(s)	976
PspEI	GGTNACC	1 cut(s)	141
PspFI	CCCAGC	1 cut(s)	1127
PspGI	CCWGG	1 cut(s)	976
PspN4I	GGNNCC	1 cut(s)	372
PsrI	GAACNNNNNNTAC	2 cut(s)	865, 897
PstI	CTGCAG	1 cut(s)	710
PsuI	RGATCY	1 cut(s)	1033
PvuII	CAGCTG	1 cut(s)	1294
RsaI	GTAC	2 cut(s)	181, 1310
RsaNI	GTAC	2 cut(s)	180, 1309
RseI	CAYNNNNRTG	3 cut(s)	722, 1245, 1676
SaqAI	TTAA	7 cut(s)	75, 306, 395, 674, 852, 1322, 1637
SatI	GCNGC	7 cut(s)	155, 706, 709, 1590, 1617, 1727, 1757
Sau3AI	GATC	1 cut(s)	1033
ScrFI	CCNGG	1 cut(s)	978
SduI	GDGCHC	4 cut(s)	1077, 1289, 1482, 1502
SfaNI	GCATC	6 cut(s)	931, 1180, 1237, 1418, 1668, 1713
SfcI	CTRYAG	1 cut(s)	706
SmiMI	CAYNNNNRTG	3 cut(s)	722, 1245, 1676
SmlI	CTYRAG	3 cut(s)	616, 1076, 1636
SmoI	CTYRAG	3 cut(s)	616, 1076, 1636
SphI	GCATGC	2 cut(s)	998, 1014
SspMI	CTAG	4 cut(s)	501, 650, 932, 1142
StyD4I	CCNGG	1 cut(s)	976
StyI	CCWWGG	2 cut(s)	323, 528
TaaI	ACNGT	4 cut(s)	519, 764, 1070, 1691
TaiI	ACGT	2 cut(s)	461, 1747
TaqI	TCGA	2 cut(s)	1237, 1765
TatI	WGTACW	2 cut(s)	179, 1308
TfiI	GAWTC	2 cut(s)	386, 958
Tru1I	TTAA	7 cut(s)	75, 306, 395, 674, 852, 1322, 1637
Tru9I	TTAA	7 cut(s)	75, 306, 395, 674, 852, 1322, 1637
TscAI	CASTG	3 cut(s)	128, 1075, 1435
TseI	GCWGC	7 cut(s)	154, 705, 708, 1589, 1616, 1726, 1756
TspDTI	ATGAA	9 cut(s)	44, 306, 399, 465, 561, 650, 966, 1181, 1578
TspGWI	ACGGA	1 cut(s)	1038
TspRI	CASTG	3 cut(s)	128, 1075, 1435
Vha464I	CTTAAG	1 cut(s)	1636
VneI	GTGCAC	1 cut(s)	1498
XapI	RAATTY	6 cut(s)	163, 471, 629, 968, 1111, 1575
XceI	RCATGY	6 cut(s)	180, 563, 567, 998, 1014, 1437
XmnI	GAANNNNTTC	1 cut(s)	957
XspI	CTAG	4 cut(s)	501, 650, 932, 1142
Zsp2I	ATGCAT	3 cut(s)	565, 996, 1105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.