Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8265609.1

Orthogroup ID

OG0007998

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 778

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8265609.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

atgatatcggtttgtggtaaagtgaacaattggcgtgaaactgagagattgtggagagatatcaaggagaatggtcatactggaacacaaattacttattgcctcttagttagcatttttgttcggtgtggtgagcatgagctagctcttgatgcttacaacgagatgattgaaaacaagtttcaaccagggaatgatacaatgcaagctataattggtgcttgctcgaaggatggaaagtgggatctggcactaaacatctttcagaatatgttggacagtgggctcaagccaaagagaattgcattcaatgcattgataaattcgcttggaaaggctgcagaggttgaactagcttttagggtatataatatcatgaaatctatggatcattcacctgatccttatacatggaaggcgttactcagtgcactgtatagggcaaatcgacatgatgatgctattaagctctttgagagcatcaagagaagtcggggctctcaattgaacttgcacttgtacaatatggctttaatgtcttgctcgaagcttggtctatgggataaatctttgcagcttttgtggcaattagaagcttctgaattgtcagtttcaacagcatcgtataaccttgtaatcagtgcttgcgagatggcaaggaagcctgaagttgcactgcaagtttatgagcacatggttcaccagaagtgcaccccagacacatttactcatctgtcactaataaggagttgcatttggggttctttctgggaggaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

259

Amino Acids

29.61

Weight (kDa)

6.71

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29290 AT3G29290 AT3G29290 AT3G29290 AT3G29290
fragaria_vesca	FvH4_6g46090
malus_domestica	MD09G1077000.v1.1
prunus_persica	Prupe.3G247100_v2.0.a1 Prupe.3G247100_v2.0.a1 Prupe.3G247100_v2.0.a1
pyrus_communis	pycom09g00420
rosa_chinensis	RchiOBHm_Chr2g0164431 RchiOBHm_Chr2g0164471
rosa_laevigata	RLG00000021461
rosa_multiflora	Rmu_co8265609.1_g000001 Rmu_sc0037425.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086570
rosa_rugosa	Rorug02G0508300
rosa_samantha	Rh2AG576600 Rh2BG587600 Rh2CG558400 Rh2DG598000
rosa_wichuraiana	Rw2G047760 Rw2G047860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	252, 395, 396
AcsI	RAATTY	1 cut(s)	322
AcuI	CTGAAG	1 cut(s)	687
AfaI	GTAC	1 cut(s)	521
AgsI	TTSAA	6 cut(s)	173, 185, 310, 350, 508, 615
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	8 cut(s)	142, 146, 209, 356, 469, 550, 577, 596
AluI	AGCT	8 cut(s)	142, 146, 209, 356, 469, 550, 577, 596
Alw21I	GWGCWC	3 cut(s)	433, 693, 713
Alw44I	GTGCAC	2 cut(s)	429, 709
AlwI	GGATC	3 cut(s)	252, 395, 396
ApaLI	GTGCAC	2 cut(s)	429, 709
ApeKI	GCWGC	2 cut(s)	338, 574
ApoI	RAATTY	1 cut(s)	322
AsuHPI	GGTGA	3 cut(s)	143, 387, 692
AsuNHI	GCTAGC	1 cut(s)	142
BaeGI	GKGCMC	2 cut(s)	433, 713
BanII	GRGCYC	2 cut(s)	288, 500
Bbv12I	GWGCWC	3 cut(s)	433, 693, 713
BbvI	GCAGC	2 cut(s)	325, 586
BccI	CCATC	2 cut(s)	227, 646
BciT130I	CCWGG	1 cut(s)	189
BfaI	CTAG	2 cut(s)	143, 353
BfmI	CTRYAG	1 cut(s)	339
BisI	GCNGC	2 cut(s)	339, 575
BlsI	GCNGC	2 cut(s)	340, 576
Bme1390I	CCNGG	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	4 cut(s)	142, 448, 489, 629
BmtI	GCTAGC	1 cut(s)	146
BpuEI	CTTGAG	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	85
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	188
BseGI	GGATG	1 cut(s)	238
BseMII	CTCAG	2 cut(s)	33, 439
BseNI	ACTGG	1 cut(s)	85
BseSI	GKGCMC	2 cut(s)	433, 713
BseXI	GCAGC	2 cut(s)	325, 586
BsiHKAI	GWGCWC	3 cut(s)	433, 693, 713
BsmI	GAATGC	1 cut(s)	305
Bsp1286I	GDGCHC	5 cut(s)	288, 433, 500, 693, 713
Bsp1407I	TGTACA	1 cut(s)	519
Bsp143I	GATC	3 cut(s)	244, 388, 400
BspCNI	CTCAG	2 cut(s)	34, 438
BspHI	TCATGA	1 cut(s)	375
BspMAI	CTGCAG	1 cut(s)	343
BspOI	GCTAGC	1 cut(s)	146
BspPI	GGATC	3 cut(s)	252, 395, 396
BsrGI	TGTACA	1 cut(s)	519
BsrI	ACTGG	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	188
BssMI	GATC	3 cut(s)	244, 388, 400
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	281, 435
BstAPI	GCANNNNNTGC	1 cut(s)	311
BstAUI	TGTACA	1 cut(s)	519
BstC8I	GCNNGC	4 cut(s)	144, 207, 223, 646
BstDEI	CTNAG	3 cut(s)	42, 106, 425
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	3 cut(s)	247, 391, 403
BstMBI	GATC	3 cut(s)	244, 388, 400
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 311, 583
BstNI	CCWGG	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	339
BstSLI	GKGCMC	2 cut(s)	433, 713
BstV1I	GCAGC	2 cut(s)	325, 586
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	238
BtsI	GCAGTG	1 cut(s)	674
BtsIMutI	CAGTG	5 cut(s)	286, 431, 433, 646, 674
Cac8I	GCNNGC	4 cut(s)	144, 207, 223, 646
CciI	TCATGA	1 cut(s)	375
Csp6I	GTAC	1 cut(s)	520
CviAII	CATG	5 cut(s)	137, 376, 411, 452, 694
CviQI	GTAC	1 cut(s)	520
DdeI	CTNAG	3 cut(s)	42, 106, 425
DpnI	GATC	3 cut(s)	246, 390, 402
DpnII	GATC	3 cut(s)	244, 388, 400
Eco24I	GRGCYC	2 cut(s)	288, 500
Eco32I	GATATC	2 cut(s)	6, 61
Eco57I	CTGAAG	1 cut(s)	687
EcoRII	CCWGG	1 cut(s)	187
EcoRV	GATATC	2 cut(s)	6, 61
EcoT22I	ATGCAT	1 cut(s)	316
EcoT38I	GRGCYC	2 cut(s)	288, 500
FaeI	CATG	5 cut(s)	140, 379, 414, 455, 697
FatI	CATG	5 cut(s)	136, 375, 410, 451, 693
Fnu4HI	GCNGC	2 cut(s)	339, 575
FokI	GGATG	1 cut(s)	245
FriOI	GRGCYC	2 cut(s)	288, 500
Fsp4HI	GCNGC	2 cut(s)	339, 575
FspBI	CTAG	2 cut(s)	143, 353
GluI	GCNGC	2 cut(s)	339, 575
Hin1II	CATG	5 cut(s)	140, 379, 414, 455, 697
HindIII	AAGCTT	2 cut(s)	548, 594
HphI	GGTGA	3 cut(s)	143, 387, 692
Hpy166II	GTNNAC	4 cut(s)	25, 431, 700, 711
Hpy188I	TCNGA	2 cut(s)	267, 601
Hpy188III	TCNNGA	3 cut(s)	149, 376, 484
Hpy8I	GTNNAC	4 cut(s)	25, 431, 700, 711
HpyAV	CCTTC	2 cut(s)	223, 409
HpyCH4III	ACNGT	2 cut(s)	281, 435
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 311, 583
HpyF3I	CTNAG	3 cut(s)	42, 106, 425
Hsp92II	CATG	5 cut(s)	140, 379, 414, 455, 697
Kzo9I	GATC	3 cut(s)	244, 388, 400
LpnPI	CCDG	9 cut(s)	66, 174, 201, 233, 411, 678, 716, 729, 754
Lsp1109I	GCAGC	2 cut(s)	325, 586
LweI	GCATC	4 cut(s)	142, 448, 489, 629
MaeI	CTAG	2 cut(s)	143, 353
MaeIII	GTNAC	2 cut(s)	420, 735
MalI	GATC	3 cut(s)	246, 390, 402
MboI	GATC	3 cut(s)	244, 388, 400
MfeI	CAATTG	2 cut(s)	28, 503
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	5 cut(s)	288, 433, 500, 693, 713
MluCI	AATT	8 cut(s)	28, 90, 213, 300, 322, 503, 587, 602
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	3 cut(s)	113, 337, 766
Mph1103I	ATGCAT	1 cut(s)	316
MseI	TTAA	2 cut(s)	465, 533
MslI	CAYNNNNRTG	1 cut(s)	456
MspR9I	CCNGG	1 cut(s)	189
MunI	CAATTG	2 cut(s)	28, 503
Mva1269I	GAATGC	1 cut(s)	305
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	3 cut(s)	152, 311, 583
NdeII	GATC	3 cut(s)	244, 388, 400
NheI	GCTAGC	1 cut(s)	142
NlaIII	CATG	5 cut(s)	140, 379, 414, 455, 697
NmuCI	GTSAC	1 cut(s)	735
NsiI	ATGCAT	1 cut(s)	316
PagI	TCATGA	1 cut(s)	375
PctI	GAATGC	1 cut(s)	305
PkrI	GCNGC	2 cut(s)	340, 576
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PsrI	GAACNNNNNNTAC	2 cut(s)	76, 108
PstI	CTGCAG	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	244
RsaI	GTAC	1 cut(s)	521
RsaNI	GTAC	1 cut(s)	520
RseI	CAYNNNNRTG	1 cut(s)	456
SaqAI	TTAA	2 cut(s)	465, 533
SatI	GCNGC	2 cut(s)	339, 575
Sau3AI	GATC	3 cut(s)	244, 388, 400
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	5 cut(s)	288, 433, 500, 693, 713
SfaNI	GCATC	4 cut(s)	142, 448, 489, 629
SfcI	CTRYAG	1 cut(s)	339
SmiMI	CAYNNNNRTG	1 cut(s)	456
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	8 cut(s)	28, 90, 213, 300, 322, 503, 587, 602
SspMI	CTAG	2 cut(s)	143, 353
StyD4I	CCNGG	1 cut(s)	187
TaaI	ACNGT	2 cut(s)	281, 435
TaqI	TCGA	3 cut(s)	227, 448, 545
TasI	AATT	8 cut(s)	28, 90, 213, 300, 322, 503, 587, 602
TatI	WGTACW	1 cut(s)	519
Tru1I	TTAA	2 cut(s)	465, 533
Tru9I	TTAA	2 cut(s)	465, 533
TscAI	CASTG	5 cut(s)	286, 433, 438, 646, 681
TseFI	GTSAC	1 cut(s)	735
TseI	GCWGC	2 cut(s)	338, 574
Tsp45I	GTSAC	1 cut(s)	735
TspDTI	ATGAA	1 cut(s)	392
TspRI	CASTG	5 cut(s)	286, 433, 438, 646, 681
VneI	GTGCAC	2 cut(s)	429, 709
XapI	RAATTY	1 cut(s)	322
XspI	CTAG	2 cut(s)	143, 353
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.