Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007302

Physical Location & Seq

Genomic Coordinates Forward (+)

15332136 .. 15333703

Gene Structure 1568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G43400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCTTTCGTGTAATTCTCTAGGAAAGCTTATGAACAACGGAGCAGATAATGGAGCCTTTCTTAGGGACTTGGCATCGTGTTCTTGTAGGGATTTAAATCTTGAGAATCTTAACATGTTCTTGTTTGTTTATACAGAACTAATTAACGCGGATGCAGAGGATGCGAGTTGTAGTAGCACGCCTAGTTGGAGAATCAAGAAAAGTCTAACATCTACGTATGCTGATGAAAAGCTTCAAGATTTGATCTCAGACCAGTGGAAAAATATGGGATGGCAAAGAAAAGATCCATCCACTGATTTCAGAGGAGATGGATTCATTTCATTGGAGAATCTTCGATTCTTTGCAAAGACTTTCTCGCGTCTCTTGAAGAAACAGGGAGGCAAAAGAGCAGCTTGGGAATATCCATTCGCTGTAGCGGGCGTCAACATAACCTTCATGATCATGCAAATGCTTGACCTAGAAGCATCAAAACCTAGGAGTTTTATACGGTTGGTATTCTTACAAATGTTGTCAGAAAGCGAATGGGCCTTTGGTTTGCTTTACTGTGTTGCCTTTGTGGTAATGGACAAGCAATGGCTGGACAAGAACGCCACCTACATGGAATTCAACGATGTGCTAAGATATGTACAAGGGGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

213

Amino Acids

24.36

Weight (kDa)

5.62

Isoelectric Point (pI)

34.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	71 - 206	3.6e-38	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67400 AT3G43400
fragaria_vesca	FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860
malus_domestica	MD13G1118100.v1.1
prunus_persica	Prupe.1G226900_v2.0.a1 Prupe.1G226900_v2.0.a1
pyrus_communis	pycom13g10220 pycom13g10280
rosa_chinensis	RchiOBHm_Chr4g0430431
rosa_laevigata	RLG00000006977
rosa_multiflora	Rmu_sc0000131.1_g000042
rosa_roxburghii	Rroxscaffold_5G00372210
rosa_rugosa	Rorug04G0243100 Rorug04G0243200
rosa_samantha	Rh4AG299400 Rh4BG306200 Rh4CG322100 Rh4DG303600
rosa_wichuraiana	Rw4G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	149, 358
AciI	CCGC	2 cut(s)	149, 416
AclWI	GGATC	1 cut(s)	278
AcsI	RAATTY	1 cut(s)	602
AcyI	GRCGYC	1 cut(s)	420
AfaI	GTAC	1 cut(s)	627
AfiI	CCNNNNNNNGG	1 cut(s)	63
AflIII	ACRYGT	1 cut(s)	114
AgsI	TTSAA	3 cut(s)	236, 367, 607
AjuI	GAANNNNNNNTTGG	2 cut(s)	513, 545
AluBI	AGCT	4 cut(s)	28, 232, 392, 638
AluI	AGCT	4 cut(s)	28, 232, 392, 638
Alw26I	GTCTC	1 cut(s)	365
AlwI	GGATC	1 cut(s)	278
AoxI	GGCC	1 cut(s)	525
ApeKI	GCWGC	2 cut(s)	389, 635
ApoI	RAATTY	1 cut(s)	602
Asp700I	GAANNNNTTC	1 cut(s)	231
AspA2I	CCTAGG	1 cut(s)	473
AspS9I	GGNCC	1 cut(s)	525
AvrII	CCTAGG	1 cut(s)	473
BbvI	GCAGC	1 cut(s)	401
BccI	CCATC	3 cut(s)	264, 295, 302
BclI	TGATCA	1 cut(s)	438
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	4 cut(s)	20, 183, 458, 474
BfmI	CTRYAG	1 cut(s)	411
BisI	GCNGC	2 cut(s)	390, 636
BlnI	CCTAGG	1 cut(s)	473
BlsI	GCNGC	2 cut(s)	391, 637
BmgT120I	GGNCC	1 cut(s)	525
BmiI	GGNNCC	1 cut(s)	55
BmsI	GCATC	4 cut(s)	83, 142, 151, 473
BpuEI	CTTGAG	1 cut(s)	122
BsaAI	YACGTR	1 cut(s)	216
BsaBI	GATNNNNATC	1 cut(s)	96
BsaHI	GRCGYC	1 cut(s)	420
BsaJI	CCNNGG	1 cut(s)	473
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
Bse1I	ACTGG	1 cut(s)	253
Bse3DI	GCAATG	1 cut(s)	578
Bse8I	GATNNNNATC	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	473
BseGI	GGATG	4 cut(s)	157, 166, 275, 287
BseJI	GATNNNNATC	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseMI	GCAATG	1 cut(s)	578
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	253
BseRI	GAGGAG	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	401
Bsh1236I	CGCG	2 cut(s)	149, 358
BshFI	GGCC	1 cut(s)	527
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	63
BsmAI	GTCTC	1 cut(s)	365
BsmBI	CGTCTC	1 cut(s)	365
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	527
Bsp1407I	TGTACA	1 cut(s)	625
Bsp143I	GATC	3 cut(s)	243, 283, 438
BspACI	CCGC	2 cut(s)	149, 416
BspANI	GGCC	1 cut(s)	527
BspCNI	CTCAG	1 cut(s)	260
BspFNI	CGCG	2 cut(s)	149, 358
BspHI	TCATGA	1 cut(s)	435
BspLI	GGNNCC	1 cut(s)	55
BspPI	GGATC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	578
BsrGI	TGTACA	1 cut(s)	625
BsrI	ACTGG	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	473
BssMI	GATC	3 cut(s)	243, 283, 438
BssNI	GRCGYC	1 cut(s)	420
BssT1I	CCWWGG	1 cut(s)	473
Bst4CI	ACNGT	2 cut(s)	489, 545
BstACI	GRCGYC	1 cut(s)	420
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstAUI	TGTACA	1 cut(s)	625
BstBAI	YACGTR	1 cut(s)	216
BstC8I	GCNNGC	2 cut(s)	179, 418
BstDEI	CTNAG	3 cut(s)	62, 247, 617
BstENI	CCTNNNNNAGG	1 cut(s)	61
BstF5I	GGATG	4 cut(s)	157, 166, 275, 287
BstFNI	CGCG	2 cut(s)	149, 358
BstKTI	GATC	3 cut(s)	246, 286, 441
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	3 cut(s)	243, 283, 438
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNSI	RCATGY	1 cut(s)	118
BstSFI	CTRYAG	1 cut(s)	411
BstSNI	TACGTA	1 cut(s)	216
BstUI	CGCG	2 cut(s)	149, 358
BstV1I	GCAGC	1 cut(s)	401
BstX2I	RGATCY	1 cut(s)	283
BstXI	CCANNNNNNTGG	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	527
BtsCI	GGATG	4 cut(s)	157, 166, 275, 287
BtsIMutI	CAGTG	2 cut(s)	260, 291
Cac8I	GCNNGC	2 cut(s)	179, 418
CciI	TCATGA	1 cut(s)	435
Cfr13I	GGNCC	1 cut(s)	525
CseI	GACGC	2 cut(s)	347, 409
Csp6I	GTAC	1 cut(s)	626
CviAII	CATG	4 cut(s)	115, 436, 442, 598
CviJI	RGCY	7 cut(s)	28, 56, 232, 392, 527, 577, 638
CviKI_1	RGCY	7 cut(s)	28, 56, 232, 392, 527, 577, 638
CviQI	GTAC	1 cut(s)	626
DdeI	CTNAG	3 cut(s)	62, 247, 617
DpnI	GATC	3 cut(s)	245, 285, 440
DpnII	GATC	3 cut(s)	243, 283, 438
DraI	TTTAAA	1 cut(s)	96
Eco105I	TACGTA	1 cut(s)	216
Eco130I	CCWWGG	1 cut(s)	473
EcoNI	CCTNNNNNAGG	1 cut(s)	61
EcoRI	GAATTC	1 cut(s)	602
EcoT14I	CCWWGG	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	473
Esp3I	CGTCTC	1 cut(s)	365
FaeI	CATG	4 cut(s)	118, 439, 445, 601
FalI	AAGNNNNNCTT	2 cut(s)	376, 408
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	4 cut(s)	114, 435, 441, 597
FauI	CCCGC	1 cut(s)	409
FbaI	TGATCA	1 cut(s)	438
Fnu4HI	GCNGC	2 cut(s)	390, 636
FokI	GGATG	4 cut(s)	164, 173, 274, 282
Fsp4HI	GCNGC	2 cut(s)	390, 636
FspBI	CTAG	4 cut(s)	20, 183, 458, 474
GluI	GCNGC	2 cut(s)	390, 636
HaeIII	GGCC	1 cut(s)	527
HgaI	GACGC	2 cut(s)	347, 409
Hin1I	GRCGYC	1 cut(s)	420
Hin1II	CATG	4 cut(s)	118, 439, 445, 601
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HindIII	AAGCTT	2 cut(s)	26, 230
HinfI	GANTC	5 cut(s)	106, 192, 312, 328, 336
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	3 cut(s)	250, 302, 514
Hpy188III	TCNNGA	5 cut(s)	101, 196, 236, 364, 436
Hpy8I	GTNNAC	1 cut(s)	424
HpyAV	CCTTC	1 cut(s)	442
HpyCH4III	ACNGT	2 cut(s)	489, 545
HpyCH4IV	ACGT	1 cut(s)	215
HpyCH4V	TGCA	3 cut(s)	155, 344, 445
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	3 cut(s)	62, 247, 617
HpySE526I	ACGT	1 cut(s)	215
Hsp92I	GRCGYC	1 cut(s)	420
Hsp92II	CATG	4 cut(s)	118, 439, 445, 601
Ksp22I	TGATCA	1 cut(s)	438
Kzo9I	GATC	3 cut(s)	243, 283, 438
LmnI	GCTCC	2 cut(s)	41, 53
LpnPI	CCDG	3 cut(s)	266, 359, 563
Lsp1109I	GCAGC	1 cut(s)	401
LweI	GCATC	4 cut(s)	83, 142, 151, 473
MaeI	CTAG	4 cut(s)	20, 183, 458, 474
MaeII	ACGT	1 cut(s)	215
MalI	GATC	3 cut(s)	245, 285, 440
MboI	GATC	3 cut(s)	243, 283, 438
MboII	GAAGA	2 cut(s)	323, 379
MflI	RGATCY	1 cut(s)	283
MluCI	AATT	3 cut(s)	13, 141, 602
MmeI	TCCRAC	1 cut(s)	167
MnlI	CCTC	3 cut(s)	151, 296, 371
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	3 cut(s)	95, 111, 144
MslI	CAYNNNNRTG	3 cut(s)	440, 446, 596
MvnI	CGCG	2 cut(s)	149, 358
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeII	GATC	3 cut(s)	243, 283, 438
NlaIII	CATG	4 cut(s)	118, 439, 445, 601
NlaIV	GGNNCC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	118
PagI	TCATGA	1 cut(s)	435
PciI	ACATGT	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	5 cut(s)	106, 192, 312, 328, 336
PkrI	GCNGC	2 cut(s)	391, 637
Ppu21I	YACGTR	1 cut(s)	216
PscI	ACATGT	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	55
PspPI	GGNCC	1 cut(s)	525
PsrI	GAACNNNNNNTAC	2 cut(s)	578, 610
PsuI	RGATCY	1 cut(s)	283
RsaI	GTAC	1 cut(s)	627
RsaNI	GTAC	1 cut(s)	626
RseI	CAYNNNNRTG	3 cut(s)	440, 446, 596
SaqAI	TTAA	3 cut(s)	95, 111, 144
SatI	GCNGC	2 cut(s)	390, 636
Sau3AI	GATC	3 cut(s)	243, 283, 438
Sau96I	GGNCC	1 cut(s)	525
SetI	ASST	9 cut(s)	30, 218, 234, 394, 434, 459, 475, 596, 640
SfaNI	GCATC	4 cut(s)	83, 142, 151, 473
SfcI	CTRYAG	1 cut(s)	411
SmiI	ATTTAAAT	1 cut(s)	96
SmiMI	CAYNNNNRTG	3 cut(s)	440, 446, 596
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
SnaBI	TACGTA	1 cut(s)	216
Sse9I	AATT	3 cut(s)	13, 141, 602
SsiI	CCGC	2 cut(s)	149, 416
SspMI	CTAG	4 cut(s)	20, 183, 458, 474
StyI	CCWWGG	1 cut(s)	473
SwaI	ATTTAAAT	1 cut(s)	96
TaaI	ACNGT	2 cut(s)	489, 545
TaiI	ACGT	1 cut(s)	218
TaqI	TCGA	1 cut(s)	334
TasI	AATT	3 cut(s)	13, 141, 602
TatI	WGTACW	1 cut(s)	625
TfiI	GAWTC	5 cut(s)	106, 192, 312, 328, 336
Tru1I	TTAA	3 cut(s)	95, 111, 144
Tru9I	TTAA	3 cut(s)	95, 111, 144
TscAI	CASTG	2 cut(s)	260, 298
TseI	GCWGC	2 cut(s)	389, 635
TspDTI	ATGAA	5 cut(s)	47, 240, 304, 309, 424
TspGWI	ACGGA	1 cut(s)	54
TspRI	CASTG	2 cut(s)	260, 298
XagI	CCTNNNNNAGG	1 cut(s)	61
XapI	RAATTY	1 cut(s)	602
XceI	RCATGY	1 cut(s)	118
XmaJI	CCTAGG	1 cut(s)	473
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	4 cut(s)	20, 183, 458, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.