Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007302

Physical Location & Seq

Genomic Coordinates Reverse (-)

26205728 .. 26209130

Gene Structure 3403 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23860.t9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCTTTCATATGATGTGAATTGTGGTACGCCGGCATGGATCGGCAAGGGGCTTACTTGTGTTTGCTTCAAGGCAAAGGGAAGTAACGAAAAGGTCTGCTTGAACTTGACACCGTTGCAGGAAGAAAGGATGAGAAGGTTGCAGCGCCGGATGAAGATATACTTTGATTCTGCTAGGACAGATCACCAGGAAGCGTTGAGGGCTCTATGGTATGCGACATATCCCGGTCAGGAGCTTCATGGCTTGGTATCTGATCAATGGAAAGAGATGGGATGGCAAGGAAGAGATCCATCTACTGATTTCAGGGGTGCTGGATTTATTTCTTTGGAGAACCTCTTGTTCTTTGCAAAGACATTTTCGACATCTTTCCAGTGCCTATTGAACAAGCAAGGAGGAAAGCCAGCTGCTTGGGAATATCCATTTGCTGTTGCCGGTGTAAATATTACATTTATGATCATGCAAATGCTTGACCTTGAAGCCACCAAACCAAGATCCTTTATCAGATCAGTTTTCTTACAGATGTTGTTAGAAAGCGAATGGGCTTTTGACTTGCTCTATTGTGTCGCCTTCATGGTTATGGATAAACAATGGCTTGAGAGAAATGCTACATACATGGAATTCAATGATGTTTTGAAATCGACTCGAGCTCAGTTGGAGAGGGAATTACTAATGGACGATGTCCTGCGGATTGAAGACATGCCTTCTTACAGCCTTCTTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

241

Amino Acids

27.86

Weight (kDa)

5.82

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	67 - 241	5.2e-52	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67400 AT3G43400
fragaria_vesca	FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860
malus_domestica	MD13G1118100.v1.1
prunus_persica	Prupe.1G226900_v2.0.a1 Prupe.1G226900_v2.0.a1
pyrus_communis	pycom13g10220 pycom13g10280
rosa_chinensis	RchiOBHm_Chr4g0430431
rosa_laevigata	RLG00000006977
rosa_multiflora	Rmu_sc0000131.1_g000042
rosa_roxburghii	Rroxscaffold_5G00372210
rosa_rugosa	Rorug04G0243100 Rorug04G0243200
rosa_samantha	Rh4AG299400 Rh4BG306200 Rh4CG322100 Rh4DG303600
rosa_wichuraiana	Rw4G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	685
AclWI	GGATC	3 cut(s)	47, 281, 486
AcsI	RAATTY	1 cut(s)	617
AfaI	GTAC	1 cut(s)	28
AgsI	TTSAA	7 cut(s)	70, 103, 382, 476, 622, 634, 692
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	3 cut(s)	235, 404, 647
AluI	AGCT	3 cut(s)	235, 404, 647
Alw21I	GWGCWC	1 cut(s)	649
AlwI	GGATC	3 cut(s)	47, 281, 486
Ama87I	CYCGRG	1 cut(s)	642
ApeKI	GCWGC	2 cut(s)	142, 404
ApoI	RAATTY	1 cut(s)	617
AspLEI	GCGC	1 cut(s)	147
AsuC2I	CCSGG	1 cut(s)	225
AsuHPI	GGTGA	1 cut(s)	176
AvaI	CYCGRG	1 cut(s)	642
BanII	GRGCYC	2 cut(s)	205, 649
BbsI	GAAGAC	1 cut(s)	699
Bbv12I	GWGCWC	1 cut(s)	649
BbvI	GCAGC	2 cut(s)	154, 391
BccI	CCATC	3 cut(s)	262, 267, 298
BciT130I	CCWGG	1 cut(s)	188
BclI	TGATCA	2 cut(s)	253, 453
BcnI	CCSGG	1 cut(s)	225
BfaI	CTAG	1 cut(s)	174
BfoI	RGCGCY	1 cut(s)	148
BisI	GCNGC	2 cut(s)	143, 405
BlsI	GCNGC	2 cut(s)	144, 406
Bme1390I	CCNGG	2 cut(s)	188, 225
BmeT110I	CYCGRG	1 cut(s)	642
BmrFI	CCNGG	2 cut(s)	188, 225
BpiI	GAAGAC	1 cut(s)	699
BpuEI	CTTGAG	1 cut(s)	614
BpuMI	CCSGG	1 cut(s)	225
Bse118I	RCCGGY	2 cut(s)	31, 431
Bse1I	ACTGG	1 cut(s)	370
BseBI	CCWGG	1 cut(s)	188
BseGI	GGATG	3 cut(s)	135, 156, 278
BseMII	CTCAG	1 cut(s)	662
BseNI	ACTGG	1 cut(s)	370
BseXI	GCAGC	2 cut(s)	154, 391
BsiHKAI	GWGCWC	1 cut(s)	649
BsiHKCI	CYCGRG	1 cut(s)	642
BsiSI	CCGG	4 cut(s)	32, 148, 225, 432
BsoBI	CYCGRG	1 cut(s)	642
Bsp1286I	GDGCHC	2 cut(s)	205, 649
Bsp143I	GATC	7 cut(s)	39, 181, 253, 286, 453, 491, 503
BspACI	CCGC	1 cut(s)	685
BspCNI	CTCAG	1 cut(s)	661
BspPI	GGATC	3 cut(s)	47, 281, 486
BsrFI	RCCGGY	2 cut(s)	31, 431
BsrI	ACTGG	1 cut(s)	370
BssAI	RCCGGY	2 cut(s)	31, 431
BssMI	GATC	7 cut(s)	39, 181, 253, 286, 453, 491, 503
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	114
Bst6I	CTCTTC	1 cut(s)	277
BstC8I	GCNNGC	2 cut(s)	33, 402
BstDEI	CTNAG	1 cut(s)	648
BstF5I	GGATG	3 cut(s)	135, 156, 278
BstH2I	RGCGCY	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	7 cut(s)	42, 184, 256, 289, 456, 494, 506
BstMBI	GATC	7 cut(s)	39, 181, 253, 286, 453, 491, 503
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNI	CCWGG	1 cut(s)	188
BstNSI	RCATGY	1 cut(s)	700
BstSCI	CCNGG	2 cut(s)	186, 223
BstV1I	GCAGC	2 cut(s)	154, 391
BstV2I	GAAGAC	1 cut(s)	699
BstX2I	RGATCY	2 cut(s)	286, 491
BstXI	CCANNNNNNTGG	1 cut(s)	408
BstYI	RGATCY	2 cut(s)	286, 491
BtsCI	GGATG	3 cut(s)	135, 156, 278
BtsIMutI	CAGTG	1 cut(s)	377
Cac8I	GCNNGC	2 cut(s)	33, 402
CfoI	GCGC	1 cut(s)	147
Cfr10I	RCCGGY	2 cut(s)	31, 431
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	6 cut(s)	36, 239, 457, 571, 613, 697
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	1 cut(s)	648
DpnI	GATC	7 cut(s)	41, 183, 255, 288, 455, 493, 505
DpnII	GATC	7 cut(s)	39, 181, 253, 286, 453, 491, 503
Eam1104I	CTCTTC	1 cut(s)	277
EarI	CTCTTC	1 cut(s)	277
Ecl136II	GAGCTC	1 cut(s)	647
Eco24I	GRGCYC	2 cut(s)	205, 649
Eco53kI	GAGCTC	1 cut(s)	647
Eco88I	CYCGRG	1 cut(s)	642
EcoICRI	GAGCTC	1 cut(s)	647
EcoRI	GAATTC	1 cut(s)	617
EcoRII	CCWGG	1 cut(s)	186
EcoT38I	GRGCYC	2 cut(s)	205, 649
FaeI	CATG	6 cut(s)	39, 242, 460, 574, 616, 700
FalI	AAGNNNNNCTT	4 cut(s)	83, 115, 146, 178
FatI	CATG	6 cut(s)	35, 238, 456, 570, 612, 696
FauNDI	CATATG	1 cut(s)	10
FbaI	TGATCA	2 cut(s)	253, 453
Fnu4HI	GCNGC	2 cut(s)	143, 405
FokI	GGATG	3 cut(s)	142, 163, 285
FriOI	GRGCYC	2 cut(s)	205, 649
Fsp4HI	GCNGC	2 cut(s)	143, 405
FspBI	CTAG	1 cut(s)	174
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	2 cut(s)	143, 405
HaeII	RGCGCY	1 cut(s)	148
HapII	CCGG	4 cut(s)	32, 148, 225, 432
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	6 cut(s)	39, 242, 460, 574, 616, 700
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HinfI	GANTC	2 cut(s)	167, 640
HpaII	CCGG	4 cut(s)	32, 148, 225, 432
HphI	GGTGA	1 cut(s)	176
Hpy188I	TCNGA	2 cut(s)	253, 503
Hpy188III	TCNNGA	1 cut(s)	230
HpyAV	CCTTC	4 cut(s)	129, 577, 711, 722
HpyCH4III	ACNGT	1 cut(s)	114
HpyCH4V	TGCA	4 cut(s)	118, 142, 347, 460
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	1 cut(s)	648
Hsp92II	CATG	6 cut(s)	39, 242, 460, 574, 616, 700
HspAI	GCGC	1 cut(s)	145
KroI	GCCGGC	1 cut(s)	31
KroNI	GCCGGC	1 cut(s)	33
Ksp22I	TGATCA	2 cut(s)	253, 453
Kzo9I	GATC	7 cut(s)	39, 181, 253, 286, 453, 491, 503
LmnI	GCTCC	1 cut(s)	232
Lsp1109I	GCAGC	2 cut(s)	154, 391
MaeI	CTAG	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	7 cut(s)	41, 183, 255, 288, 455, 493, 505
MboI	GATC	7 cut(s)	39, 181, 253, 286, 453, 491, 503
MboII	GAAGA	4 cut(s)	134, 166, 294, 704
MflI	RGATCY	2 cut(s)	286, 491
MhlI	GDGCHC	2 cut(s)	205, 649
MluCI	AATT	3 cut(s)	19, 617, 662
MlyI	GAGTC	1 cut(s)	634
MmeI	TCCRAC	1 cut(s)	633
MnlI	CCTC	4 cut(s)	192, 344, 386, 651
MroNI	GCCGGC	1 cut(s)	31
MslI	CAYNNNNRTG	2 cut(s)	461, 575
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	4 cut(s)	32, 148, 225, 432
MspR9I	CCNGG	2 cut(s)	188, 225
MvaI	CCWGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	200
NaeI	GCCGGC	1 cut(s)	33
NciI	CCSGG	1 cut(s)	225
NdeI	CATATG	1 cut(s)	10
NdeII	GATC	7 cut(s)	39, 181, 253, 286, 453, 491, 503
NgoMIV	GCCGGC	1 cut(s)	31
NlaIII	CATG	6 cut(s)	39, 242, 460, 574, 616, 700
NspI	RCATGY	1 cut(s)	700
PaeR7I	CTCGAG	1 cut(s)	642
PdiI	GCCGGC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	167
PflFI	GACNNNGTC	1 cut(s)	677
PkrI	GCNGC	2 cut(s)	144, 406
PleI	GAGTC	1 cut(s)	634
PpsI	GAGTC	1 cut(s)	634
Psp124BI	GAGCTC	1 cut(s)	649
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspXI	VCTCGAGB	1 cut(s)	642
PsuI	RGATCY	2 cut(s)	286, 491
PsyI	GACNNNGTC	1 cut(s)	677
PvuII	CAGCTG	1 cut(s)	404
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
RseI	CAYNNNNRTG	2 cut(s)	461, 575
SacI	GAGCTC	1 cut(s)	649
SatI	GCNGC	2 cut(s)	143, 405
Sau3AI	GATC	7 cut(s)	39, 181, 253, 286, 453, 491, 503
SchI	GAGTC	1 cut(s)	634
ScrFI	CCNGG	2 cut(s)	188, 225
SduI	GDGCHC	2 cut(s)	205, 649
SetI	ASST	7 cut(s)	96, 140, 237, 336, 406, 474, 649
Sfr274I	CTCGAG	1 cut(s)	642
SlaI	CTCGAG	1 cut(s)	642
SmiMI	CAYNNNNRTG	2 cut(s)	461, 575
SmlI	CTYRAG	2 cut(s)	593, 642
SmoI	CTYRAG	2 cut(s)	593, 642
Sse9I	AATT	3 cut(s)	19, 617, 662
SsiI	CCGC	1 cut(s)	685
SspI	AATATT	1 cut(s)	442
SspMI	CTAG	1 cut(s)	174
SstI	GAGCTC	1 cut(s)	649
StyD4I	CCNGG	2 cut(s)	186, 223
TaaI	ACNGT	1 cut(s)	114
TaqI	TCGA	3 cut(s)	359, 638, 643
TasI	AATT	3 cut(s)	19, 617, 662
TfiI	GAWTC	1 cut(s)	167
TscAI	CASTG	1 cut(s)	377
TseI	GCWGC	2 cut(s)	142, 404
TspDTI	ATGAA	3 cut(s)	167, 227, 559
TspRI	CASTG	1 cut(s)	377
Tth111I	GACNNNGTC	1 cut(s)	677
XapI	RAATTY	1 cut(s)	617
XceI	RCATGY	1 cut(s)	700
XhoI	CTCGAG	1 cut(s)	642
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.