Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007302

Physical Location & Seq

Genomic Coordinates Reverse (-)

24020332 .. 24023141

Gene Structure 2810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G226900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAAATGCTTTCTAGTGGATCGTGTGCTACTGCCAGCTGATGCAACATGTGTTTGCTTCAAGCGAAAGGGAAATTATCAACGGATCTGCATGAACTTGACACCCCTTCAGGAAGAAAGAATGCGACGGTTGAAGCGCCGAATGAAGGTTTACTTTGATGCTGCTAGGCCAGATCACCAGGAAGCATTGAGAGCTCTTTGGTATGCTACGTATCCTGGTCAAGAGCTTCAAGGGTTGATATCGGATCAATGGAAAGAGATGGGATGGCAGGGAAGAGATCCATCTACTGATTTCAGAGGTGCTGGTTTCATTTCTTTGGAGAACCTGTTGTTCTTTGCAAAGACGTTTTCGACATCTTTCCAGTGCCTATTGAAAAAGCAGGGAGGAAAGCCGGCCGCTTGGGAATATCCGTTTGCTGTTGCTGGTGTAAATATCACATTCATGATCATGCAAATGCTTGACCTTGAAGCCACAAAACCCAGGACTTTCATCAGAGCAGTTTTCTTACAAATGTTGTTAGAAAATGAGTGGTCCTTTGACTTGCTTTATTGCGTGGCTTTCATGGTTATGGACAAGCAGTGGCTTGAGAGAAATGCTACATACATGGAGTTCAATGATGTTTTGAAATCCACTCGAGCTCAGTTGGAGAGGGAACTGCTAATGGATGATGTCTTCCGGATTGAAGACATGCCATCTTACAGCCTTCTTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

238

Amino Acids

27.91

Weight (kDa)

8.12

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67400 AT3G43400
fragaria_vesca	FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860
malus_domestica	MD13G1118100.v1.1
prunus_persica	Prupe.1G226900_v2.0.a1 Prupe.1G226900_v2.0.a1
pyrus_communis	pycom13g10220 pycom13g10280
rosa_chinensis	RchiOBHm_Chr4g0430431
rosa_laevigata	RLG00000006977
rosa_multiflora	Rmu_sc0000131.1_g000042
rosa_roxburghii	Rroxscaffold_5G00372210
rosa_rugosa	Rorug04G0243100 Rorug04G0243200
rosa_samantha	Rh4AG299400 Rh4BG306200 Rh4CG322100 Rh4DG303600
rosa_wichuraiana	Rw4G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	675
AciI	CCGC	1 cut(s)	396
AclWI	GGATC	4 cut(s)	27, 92, 252, 272
AcoI	YGGCCR	1 cut(s)	393
AcuI	CTGAAG	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	145
AflIII	ACRYGT	1 cut(s)	47
AgsI	TTSAA	8 cut(s)	61, 133, 230, 373, 467, 613, 625, 683
AjnI	CCWGG	3 cut(s)	177, 214, 479
AluBI	AGCT	4 cut(s)	38, 194, 226, 638
AluI	AGCT	4 cut(s)	38, 194, 226, 638
Alw21I	GWGCWC	2 cut(s)	196, 640
AlwI	GGATC	4 cut(s)	27, 92, 252, 272
Ama87I	CYCGRG	1 cut(s)	633
Aor13HI	TCCGGA	1 cut(s)	675
AoxI	GGCC	2 cut(s)	167, 393
ApeKI	GCWGC	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	138
AspS9I	GGNCC	1 cut(s)	531
AsuHPI	GGTGA	1 cut(s)	167
AvaI	CYCGRG	1 cut(s)	633
AvaII	GGWCC	1 cut(s)	531
BanII	GRGCYC	2 cut(s)	196, 640
BbsI	GAAGAC	2 cut(s)	664, 690
Bbv12I	GWGCWC	2 cut(s)	196, 640
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	4 cut(s)	253, 258, 289, 700
BciT130I	CCWGG	3 cut(s)	179, 216, 481
BciVI	GTATCC	1 cut(s)	222
BclI	TGATCA	1 cut(s)	444
BfaI	CTAG	2 cut(s)	14, 165
BfoI	RGCGCY	1 cut(s)	139
BfuI	GTATCC	1 cut(s)	222
BisI	GCNGC	2 cut(s)	162, 396
BlsI	GCNGC	2 cut(s)	163, 397
Bme1390I	CCNGG	3 cut(s)	179, 216, 481
Bme18I	GGWCC	1 cut(s)	531
BmeT110I	CYCGRG	1 cut(s)	633
BmgT120I	GGNCC	1 cut(s)	531
BmrFI	CCNGG	3 cut(s)	179, 216, 481
BmsI	GCATC	2 cut(s)	31, 148
BpiI	GAAGAC	2 cut(s)	664, 690
BpuEI	CTTGAG	1 cut(s)	605
BsaAI	YACGTR	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	479
BsaWI	WCCGGW	1 cut(s)	675
BsaXI	ACNNNNNCTCC	2 cut(s)	311, 341
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse118I	RCCGGY	1 cut(s)	391
Bse1I	ACTGG	1 cut(s)	361
BseAI	TCCGGA	1 cut(s)	675
BseBI	CCWGG	3 cut(s)	179, 216, 481
BseDI	CCNNGG	1 cut(s)	479
BseGI	GGATG	2 cut(s)	269, 670
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMII	CTCAG	1 cut(s)	653
BseNI	ACTGG	1 cut(s)	361
BseX3I	CGGCCG	1 cut(s)	393
BseXI	GCAGC	1 cut(s)	148
Bsh1285I	CGRYCG	1 cut(s)	396
BshFI	GGCC	2 cut(s)	169, 395
BsiEI	CGRYCG	1 cut(s)	396
BsiHKAI	GWGCWC	2 cut(s)	196, 640
BsiHKCI	CYCGRG	1 cut(s)	633
BsiSI	CCGG	2 cut(s)	392, 676
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmI	GAATGC	1 cut(s)	126
BsnI	GGCC	2 cut(s)	169, 395
BsoBI	CYCGRG	1 cut(s)	633
Bsp1286I	GDGCHC	2 cut(s)	196, 640
Bsp13I	TCCGGA	1 cut(s)	675
Bsp143I	GATC	6 cut(s)	19, 84, 172, 244, 277, 444
BspACI	CCGC	1 cut(s)	396
BspANI	GGCC	2 cut(s)	169, 395
BspCNI	CTCAG	1 cut(s)	652
BspEI	TCCGGA	1 cut(s)	675
BspHI	TCATGA	1 cut(s)	441
BspPI	GGATC	4 cut(s)	27, 92, 252, 272
BsrFI	RCCGGY	1 cut(s)	391
BsrI	ACTGG	1 cut(s)	361
BssAI	RCCGGY	1 cut(s)	391
BssECI	CCNNGG	1 cut(s)	479
BssMI	GATC	6 cut(s)	19, 84, 172, 244, 277, 444
Bst2UI	CCWGG	3 cut(s)	179, 216, 481
Bst4CI	ACNGT	1 cut(s)	129
Bst6I	CTCTTC	1 cut(s)	268
BstBAI	YACGTR	1 cut(s)	210
BstC8I	GCNNGC	2 cut(s)	36, 393
BstDEI	CTNAG	1 cut(s)	639
BstF5I	GGATG	2 cut(s)	269, 670
BstH2I	RGCGCY	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	138
BstKTI	GATC	6 cut(s)	22, 87, 175, 247, 280, 447
BstMBI	GATC	6 cut(s)	19, 84, 172, 244, 277, 444
BstMCI	CGRYCG	1 cut(s)	396
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 708
BstNI	CCWGG	3 cut(s)	179, 216, 481
BstNSI	RCATGY	2 cut(s)	51, 691
BstSCI	CCNGG	3 cut(s)	177, 214, 479
BstSNI	TACGTA	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	148
BstV2I	GAAGAC	2 cut(s)	664, 690
BstX2I	RGATCY	2 cut(s)	84, 277
BstYI	RGATCY	2 cut(s)	84, 277
BstZI	CGGCCG	1 cut(s)	393
BsuI	GTATCC	1 cut(s)	222
BsuRI	GGCC	2 cut(s)	169, 395
BtsCI	GGATG	2 cut(s)	269, 670
BtsI	GCAGTG	1 cut(s)	584
BtsIMutI	CAGTG	2 cut(s)	368, 584
Cac8I	GCNNGC	2 cut(s)	36, 393
CciI	TCATGA	1 cut(s)	441
CfoI	GCGC	1 cut(s)	138
Cfr10I	RCCGGY	1 cut(s)	391
Cfr13I	GGNCC	1 cut(s)	531
CviAII	CATG	7 cut(s)	48, 91, 442, 448, 562, 604, 688
DdeI	CTNAG	1 cut(s)	639
DpnI	GATC	6 cut(s)	21, 86, 174, 246, 279, 446
DpnII	GATC	6 cut(s)	19, 84, 172, 244, 277, 444
EaeI	YGGCCR	1 cut(s)	393
EagI	CGGCCG	1 cut(s)	393
Eam1104I	CTCTTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	268
Ecl136II	GAGCTC	2 cut(s)	194, 638
EclXI	CGGCCG	1 cut(s)	393
Eco105I	TACGTA	1 cut(s)	210
Eco24I	GRGCYC	2 cut(s)	196, 640
Eco32I	GATATC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	531
Eco52I	CGGCCG	1 cut(s)	393
Eco53kI	GAGCTC	2 cut(s)	194, 638
Eco57I	CTGAAG	1 cut(s)	92
Eco88I	CYCGRG	1 cut(s)	633
EcoICRI	GAGCTC	2 cut(s)	194, 638
EcoRII	CCWGG	3 cut(s)	177, 214, 479
EcoRV	GATATC	1 cut(s)	240
EcoT38I	GRGCYC	2 cut(s)	196, 640
FaeI	CATG	7 cut(s)	51, 94, 445, 451, 565, 607, 691
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FatI	CATG	7 cut(s)	47, 90, 441, 447, 561, 603, 687
FbaI	TGATCA	1 cut(s)	444
Fnu4HI	GCNGC	2 cut(s)	162, 396
FokI	GGATG	2 cut(s)	276, 677
FriOI	GRGCYC	2 cut(s)	196, 640
Fsp4HI	GCNGC	2 cut(s)	162, 396
FspBI	CTAG	2 cut(s)	14, 165
GlaI	GCGC	1 cut(s)	137
GluI	GCNGC	2 cut(s)	162, 396
HaeII	RGCGCY	1 cut(s)	139
HaeIII	GGCC	2 cut(s)	169, 395
HapII	CCGG	2 cut(s)	392, 676
HhaI	GCGC	1 cut(s)	138
Hin1II	CATG	7 cut(s)	51, 94, 445, 451, 565, 607, 691
Hin6I	GCGC	1 cut(s)	136
HinP1I	GCGC	1 cut(s)	136
HpaII	CCGG	2 cut(s)	392, 676
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	3 cut(s)	244, 296, 494
Hpy188III	TCNNGA	4 cut(s)	110, 221, 442, 676
Hpy8I	GTNNAC	1 cut(s)	151
Hpy99I	CGWCG	1 cut(s)	129
HpyAV	CCTTC	3 cut(s)	116, 139, 713
HpyCH4III	ACNGT	1 cut(s)	129
HpyCH4IV	ACGT	2 cut(s)	209, 344
HpyCH4V	TGCA	4 cut(s)	44, 90, 338, 451
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 708
HpyF3I	CTNAG	1 cut(s)	639
HpySE526I	ACGT	2 cut(s)	209, 344
Hsp92II	CATG	7 cut(s)	51, 94, 445, 451, 565, 607, 691
HspAI	GCGC	1 cut(s)	136
Kpn2I	TCCGGA	1 cut(s)	675
KroI	GCCGGC	1 cut(s)	391
KroNI	GCCGGC	1 cut(s)	393
Ksp22I	TGATCA	1 cut(s)	444
Kzo9I	GATC	6 cut(s)	19, 84, 172, 244, 277, 444
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	2 cut(s)	31, 148
MaeI	CTAG	2 cut(s)	14, 165
MaeII	ACGT	2 cut(s)	209, 344
MalI	GATC	6 cut(s)	21, 86, 174, 246, 279, 446
MboI	GATC	6 cut(s)	19, 84, 172, 244, 277, 444
MboII	GAAGA	4 cut(s)	125, 285, 664, 695
MflI	RGATCY	2 cut(s)	84, 277
MhlI	GDGCHC	2 cut(s)	196, 640
MluCI	AATT	1 cut(s)	73
MmeI	TCCRAC	1 cut(s)	624
MnlI	CCTC	3 cut(s)	290, 377, 642
MroI	TCCGGA	1 cut(s)	675
MroNI	GCCGGC	1 cut(s)	391
MslI	CAYNNNNRTG	4 cut(s)	440, 446, 452, 566
MspA1I	CMGCKG	1 cut(s)	38
MspI	CCGG	2 cut(s)	392, 676
MspR9I	CCNGG	3 cut(s)	179, 216, 481
Mva1269I	GAATGC	1 cut(s)	126
MvaI	CCWGG	3 cut(s)	179, 216, 481
MwoI	GCNNNNNNNGC	2 cut(s)	191, 708
NaeI	GCCGGC	1 cut(s)	393
NdeII	GATC	6 cut(s)	19, 84, 172, 244, 277, 444
NgoMIV	GCCGGC	1 cut(s)	391
NlaIII	CATG	7 cut(s)	51, 94, 445, 451, 565, 607, 691
NspI	RCATGY	2 cut(s)	51, 691
PaeR7I	CTCGAG	1 cut(s)	633
PagI	TCATGA	1 cut(s)	441
PciI	ACATGT	1 cut(s)	47
PctI	GAATGC	1 cut(s)	126
PdiI	GCCGGC	1 cut(s)	393
PkrI	GCNGC	2 cut(s)	163, 397
Ppu21I	YACGTR	1 cut(s)	210
PscI	ACATGT	1 cut(s)	47
Psp124BI	GAGCTC	2 cut(s)	196, 640
Psp6I	CCWGG	3 cut(s)	177, 214, 479
PspGI	CCWGG	3 cut(s)	177, 214, 479
PspPI	GGNCC	1 cut(s)	531
PspXI	VCTCGAGB	1 cut(s)	633
PsuI	RGATCY	2 cut(s)	84, 277
PvuII	CAGCTG	1 cut(s)	38
RseI	CAYNNNNRTG	4 cut(s)	440, 446, 452, 566
SacI	GAGCTC	2 cut(s)	196, 640
SatI	GCNGC	2 cut(s)	162, 396
Sau3AI	GATC	6 cut(s)	19, 84, 172, 244, 277, 444
Sau96I	GGNCC	1 cut(s)	531
ScrFI	CCNGG	3 cut(s)	179, 216, 481
SduI	GDGCHC	2 cut(s)	196, 640
SfaNI	GCATC	2 cut(s)	31, 148
Sfr274I	CTCGAG	1 cut(s)	633
SinI	GGWCC	1 cut(s)	531
SlaI	CTCGAG	1 cut(s)	633
SmiMI	CAYNNNNRTG	4 cut(s)	440, 446, 452, 566
SmlI	CTYRAG	2 cut(s)	584, 633
SmoI	CTYRAG	2 cut(s)	584, 633
SnaBI	TACGTA	1 cut(s)	210
Sse9I	AATT	1 cut(s)	73
SsiI	CCGC	1 cut(s)	396
SspMI	CTAG	2 cut(s)	14, 165
SstI	GAGCTC	2 cut(s)	196, 640
StyD4I	CCNGG	3 cut(s)	177, 214, 479
TaaI	ACNGT	1 cut(s)	129
TaiI	ACGT	2 cut(s)	212, 347
TaqI	TCGA	2 cut(s)	350, 634
TasI	AATT	1 cut(s)	73
TauI	GCSGC	1 cut(s)	398
TscAI	CASTG	2 cut(s)	368, 584
TseI	GCWGC	1 cut(s)	161
TspDTI	ATGAA	7 cut(s)	17, 107, 158, 298, 430, 478, 550
TspGWI	ACGGA	2 cut(s)	97, 399
TspRI	CASTG	2 cut(s)	368, 584
VpaK11BI	GGWCC	1 cut(s)	531
XceI	RCATGY	2 cut(s)	51, 691
XhoI	CTCGAG	1 cut(s)	633
XspI	CTAG	2 cut(s)	14, 165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.