Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0007302

Physical Location & Seq

Genomic Coordinates Forward (+)

12321180 .. 12324456

Gene Structure 3277 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006977

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGAGGCTAGAGATGAGTATGGTGAAGAGTCAAGGCAGTTCCGTCGCGGCGATGCGTACCCTCTCTTCTTCCTCCGCCACTTCTCGCTGTTCCACTCAACGTTCCGCCACTAATTCTTCTTCCTCAGATGACACGAATTGTGGTACGCCAACATGGATCGGGAAGGGGCTTACTTGTGTTTGCTTCAAGGCAAAGGGAAATTATGAAAGGGTCTGCTTGAATCTGACACCCCTGCAGGAAGAAAGGATGAGAAGGTTGCAGCGCCGGATGAAGATTTACTTTGATTCTTCTAGGCCAGATCACCAGGAAGCGCTGAGAGCTCTATGGTATGCTACATATCCCGGTCAAGAGCTTCATGGCTTGGTATCTGATCAGTGGAAAGAGATGGGATGGCAGGGAAGAGATCCATCTACTGATTTCAGAGGTGCTGGATTTATTTCTTTGGAGAACCTCTTGTTCTTCGCAAAGACATTTTCGACATCTTTCCAGTGCTTATTGAACAAGCAAGGAGGAAAGCCAGCTGCTTGGGAATATCCATTTGCTGTTGCCGGTGTAAATATTACATTTATGATCATGCAAATGCTTGACCTCGAAGCCACGAAACCAAGGTCCTTTATCAGGGCAGTTTTCTTACAGATGTTGTTAGAAAGCGAGTGGGCTTTTGACTTGCTCTATTGCGTCGCCTTCATGGTTATGGATAAACAGTGGCTTGAGAGAAATGCTACATACATGGAATTCAATGATGTTTTGAAATCAACTCAAGCTCAATTGGAGAGGGAATTACTAATGGACGATGTCTTGCGGATTGAAGACATGCCTTCTTACAGCCTTCTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

280

Amino Acids

31.95

Weight (kDa)

6.75

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	85 - 250	2.5e-52	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67400 AT3G43400
fragaria_vesca	FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860
malus_domestica	MD13G1118100.v1.1
prunus_persica	Prupe.1G226900_v2.0.a1 Prupe.1G226900_v2.0.a1
pyrus_communis	pycom13g10220 pycom13g10280
rosa_chinensis	RchiOBHm_Chr4g0430431
rosa_laevigata	RLG00000006977
rosa_multiflora	Rmu_sc0000131.1_g000042
rosa_roxburghii	Rroxscaffold_5G00372210
rosa_rugosa	Rorug04G0243100 Rorug04G0243200
rosa_samantha	Rh4AG299400 Rh4BG306200 Rh4CG322100 Rh4DG303600
rosa_wichuraiana	Rw4G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	47
AciI	CCGC	4 cut(s)	47, 75, 105, 802
AclI	AACGTT	1 cut(s)	100
AclWI	GGATC	2 cut(s)	164, 398
AcsI	RAATTY	1 cut(s)	734
AfaI	GTAC	2 cut(s)	58, 145
AfeI	AGCGCT	1 cut(s)	312
AfiI	CCNNNNNNNGG	1 cut(s)	618
AgsI	TTSAA	6 cut(s)	187, 220, 499, 739, 751, 809
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	4 cut(s)	320, 352, 521, 764
AluI	AGCT	4 cut(s)	320, 352, 521, 764
Alw21I	GWGCWC	1 cut(s)	322
AlwI	GGATC	2 cut(s)	164, 398
Aor51HI	AGCGCT	1 cut(s)	312
AoxI	GGCC	1 cut(s)	293
ApeKI	GCWGC	2 cut(s)	259, 521
ApoI	RAATTY	1 cut(s)	734
ArsI	GACNNNNNNTTYG	2 cut(s)	593, 625
AspLEI	GCGC	2 cut(s)	264, 313
AspS9I	GGNCC	1 cut(s)	609
AsuC2I	CCSGG	1 cut(s)	342
AsuHPI	GGTGA	2 cut(s)	34, 293
AvaII	GGWCC	1 cut(s)	609
BanII	GRGCYC	1 cut(s)	322
BarI	GAAGNNNNNNTAC	2 cut(s)	49, 81
BbsI	GAAGAC	1 cut(s)	816
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	2 cut(s)	271, 508
BccI	CCATC	3 cut(s)	379, 384, 415
BcgI	CGANNNNNNTGC	2 cut(s)	25, 59
BciT130I	CCWGG	1 cut(s)	305
BclI	TGATCA	2 cut(s)	370, 570
BcnI	CCSGG	1 cut(s)	342
BfaI	CTAG	2 cut(s)	8, 291
BfmI	CTRYAG	1 cut(s)	233
BfoI	RGCGCY	2 cut(s)	265, 314
BisI	GCNGC	3 cut(s)	48, 260, 522
BlsI	GCNGC	3 cut(s)	49, 261, 523
Bme1390I	CCNGG	2 cut(s)	305, 342
Bme18I	GGWCC	1 cut(s)	609
BmgT120I	GGNCC	1 cut(s)	609
BmrFI	CCNGG	2 cut(s)	305, 342
BmsI	GCATC	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	816
BpuEI	CTTGAG	2 cut(s)	731, 744
BpuMI	CCSGG	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	605
Bsc4I	CCNNNNNNNGG	1 cut(s)	618
Bse118I	RCCGGY	1 cut(s)	548
Bse1I	ACTGG	1 cut(s)	487
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	1 cut(s)	605
BseGI	GGATG	3 cut(s)	252, 273, 395
BseLI	CCNNNNNNNGG	1 cut(s)	618
BseMII	CTCAG	2 cut(s)	138, 305
BseNI	ACTGG	1 cut(s)	487
BseXI	GCAGC	2 cut(s)	271, 508
Bsh1236I	CGCG	1 cut(s)	47
BshFI	GGCC	1 cut(s)	295
BsiHKAI	GWGCWC	1 cut(s)	322
BsiSI	CCGG	3 cut(s)	265, 342, 549
BslI	CCNNNNNNNGG	1 cut(s)	618
BsnI	GGCC	1 cut(s)	295
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	5 cut(s)	156, 298, 370, 403, 570
BspACI	CCGC	4 cut(s)	47, 75, 105, 802
BspANI	GGCC	1 cut(s)	295
BspCNI	CTCAG	2 cut(s)	137, 306
BspFNI	CGCG	1 cut(s)	47
BspMAI	CTGCAG	1 cut(s)	237
BspPI	GGATC	2 cut(s)	164, 398
BsrFI	RCCGGY	1 cut(s)	548
BsrI	ACTGG	1 cut(s)	487
BssAI	RCCGGY	1 cut(s)	548
BssECI	CCNNGG	1 cut(s)	605
BssMI	GATC	5 cut(s)	156, 298, 370, 403, 570
BssT1I	CCWWGG	1 cut(s)	605
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	1 cut(s)	705
Bst6I	CTCTTC	3 cut(s)	20, 70, 394
BstC8I	GCNNGC	1 cut(s)	519
BstDEI	CTNAG	2 cut(s)	124, 314
BstENI	CCTNNNNNAGG	1 cut(s)	616
BstF5I	GGATG	3 cut(s)	252, 273, 395
BstFNI	CGCG	1 cut(s)	47
BstH2I	RGCGCY	2 cut(s)	265, 314
BstHHI	GCGC	2 cut(s)	264, 313
BstKTI	GATC	5 cut(s)	159, 301, 373, 406, 573
BstMBI	GATC	5 cut(s)	156, 298, 370, 403, 570
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNI	CCWGG	1 cut(s)	305
BstNSI	RCATGY	1 cut(s)	817
BstSCI	CCNGG	2 cut(s)	303, 340
BstSFI	CTRYAG	1 cut(s)	233
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	2 cut(s)	271, 508
BstV2I	GAAGAC	1 cut(s)	816
BstX2I	RGATCY	1 cut(s)	403
BstXI	CCANNNNNNTGG	1 cut(s)	525
BstYI	RGATCY	1 cut(s)	403
BsuRI	GGCC	1 cut(s)	295
BtgZI	GCGATG	1 cut(s)	65
BtsCI	GGATG	3 cut(s)	252, 273, 395
BtsIMutI	CAGTG	3 cut(s)	380, 494, 710
Cac8I	GCNNGC	1 cut(s)	519
CfoI	GCGC	2 cut(s)	264, 313
Cfr10I	RCCGGY	1 cut(s)	548
Cfr13I	GGNCC	1 cut(s)	609
CseI	GACGC	1 cut(s)	667
Csp6I	GTAC	2 cut(s)	57, 144
CviAII	CATG	6 cut(s)	153, 356, 574, 688, 730, 814
CviQI	GTAC	2 cut(s)	57, 144
DdeI	CTNAG	2 cut(s)	124, 314
DpnI	GATC	5 cut(s)	158, 300, 372, 405, 572
DpnII	GATC	5 cut(s)	156, 298, 370, 403, 570
Eam1104I	CTCTTC	3 cut(s)	20, 70, 394
EarI	CTCTTC	3 cut(s)	20, 70, 394
EciI	GGCGGA	2 cut(s)	64, 94
Ecl136II	GAGCTC	1 cut(s)	320
Eco130I	CCWWGG	1 cut(s)	605
Eco24I	GRGCYC	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	609
Eco47III	AGCGCT	1 cut(s)	312
Eco53kI	GAGCTC	1 cut(s)	320
EcoICRI	GAGCTC	1 cut(s)	320
EcoNI	CCTNNNNNAGG	1 cut(s)	616
EcoO109I	RGGNCCY	1 cut(s)	609
EcoRI	GAATTC	1 cut(s)	734
EcoRII	CCWGG	1 cut(s)	303
EcoT14I	CCWWGG	1 cut(s)	605
EcoT38I	GRGCYC	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	605
FaeI	CATG	6 cut(s)	156, 359, 577, 691, 733, 817
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FatI	CATG	6 cut(s)	152, 355, 573, 687, 729, 813
FbaI	TGATCA	2 cut(s)	370, 570
Fnu4HI	GCNGC	3 cut(s)	48, 260, 522
FokI	GGATG	3 cut(s)	259, 280, 402
FriOI	GRGCYC	1 cut(s)	322
Fsp4HI	GCNGC	3 cut(s)	48, 260, 522
FspBI	CTAG	2 cut(s)	8, 291
GlaI	GCGC	2 cut(s)	263, 312
GluI	GCNGC	3 cut(s)	48, 260, 522
HaeII	RGCGCY	2 cut(s)	265, 314
HaeIII	GGCC	1 cut(s)	295
HapII	CCGG	3 cut(s)	265, 342, 549
HgaI	GACGC	1 cut(s)	667
HhaI	GCGC	2 cut(s)	264, 313
Hin1II	CATG	6 cut(s)	156, 359, 577, 691, 733, 817
Hin6I	GCGC	2 cut(s)	262, 311
HinP1I	GCGC	2 cut(s)	262, 311
HinfI	GANTC	3 cut(s)	28, 220, 284
HpaII	CCGG	3 cut(s)	265, 342, 549
HphI	GGTGA	2 cut(s)	34, 293
Hpy188I	TCNGA	4 cut(s)	127, 225, 370, 422
Hpy188III	TCNNGA	2 cut(s)	160, 347
Hpy99I	CGWCG	2 cut(s)	47, 683
HpyAV	CCTTC	5 cut(s)	157, 246, 694, 828, 839
HpyCH4III	ACNGT	1 cut(s)	705
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	3 cut(s)	235, 259, 577
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	2 cut(s)	124, 314
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	6 cut(s)	156, 359, 577, 691, 733, 817
HspAI	GCGC	2 cut(s)	262, 311
Ksp22I	TGATCA	2 cut(s)	370, 570
Kzo9I	GATC	5 cut(s)	156, 298, 370, 403, 570
Lsp1109I	GCAGC	2 cut(s)	271, 508
LweI	GCATC	1 cut(s)	42
MaeI	CTAG	2 cut(s)	8, 291
MaeII	ACGT	1 cut(s)	100
MalI	GATC	5 cut(s)	158, 300, 372, 405, 572
MboI	GATC	5 cut(s)	156, 298, 370, 403, 570
MfeI	CAATTG	1 cut(s)	767
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	1 cut(s)	322
MluCI	AATT	6 cut(s)	112, 136, 199, 734, 767, 779
MlyI	GAGTC	1 cut(s)	37
MnlI	CCTC	8 cut(s)	71, 82, 133, 416, 461, 503, 599, 768
MslI	CAYNNNNRTG	2 cut(s)	578, 692
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	3 cut(s)	265, 342, 549
MspR9I	CCNGG	2 cut(s)	305, 342
MunI	CAATTG	1 cut(s)	767
MvaI	CCWGG	1 cut(s)	305
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	1 cut(s)	317
NciI	CCSGG	1 cut(s)	342
NdeII	GATC	5 cut(s)	156, 298, 370, 403, 570
NlaIII	CATG	6 cut(s)	156, 359, 577, 691, 733, 817
NspI	RCATGY	1 cut(s)	817
PfeI	GAWTC	2 cut(s)	220, 284
PflFI	GACNNNGTC	1 cut(s)	794
PkrI	GCNGC	3 cut(s)	49, 261, 523
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
PpuMI	RGGWCCY	1 cut(s)	609
Psp124BI	GAGCTC	1 cut(s)	322
Psp1406I	AACGTT	1 cut(s)	100
Psp5II	RGGWCCY	1 cut(s)	609
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PspPI	GGNCC	1 cut(s)	609
PspPPI	RGGWCCY	1 cut(s)	609
PstI	CTGCAG	1 cut(s)	237
PsuI	RGATCY	1 cut(s)	403
PsyI	GACNNNGTC	1 cut(s)	794
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	2 cut(s)	58, 145
RsaNI	GTAC	2 cut(s)	57, 144
RseI	CAYNNNNRTG	2 cut(s)	578, 692
SacI	GAGCTC	1 cut(s)	322
SatI	GCNGC	3 cut(s)	48, 260, 522
Sau3AI	GATC	5 cut(s)	156, 298, 370, 403, 570
Sau96I	GGNCC	1 cut(s)	609
SbfI	CCTGCAGG	1 cut(s)	237
SchI	GAGTC	1 cut(s)	37
ScrFI	CCNGG	2 cut(s)	305, 342
SdaI	CCTGCAGG	1 cut(s)	237
SduI	GDGCHC	1 cut(s)	322
SfaNI	GCATC	1 cut(s)	42
SfcI	CTRYAG	1 cut(s)	233
SinI	GGWCC	1 cut(s)	609
SmiMI	CAYNNNNRTG	2 cut(s)	578, 692
SmlI	CTYRAG	2 cut(s)	710, 759
SmoI	CTYRAG	2 cut(s)	710, 759
Sse8387I	CCTGCAGG	1 cut(s)	237
Sse9I	AATT	6 cut(s)	112, 136, 199, 734, 767, 779
SsiI	CCGC	4 cut(s)	47, 75, 105, 802
SspI	AATATT	1 cut(s)	559
SspMI	CTAG	2 cut(s)	8, 291
SstI	GAGCTC	1 cut(s)	322
StyD4I	CCNGG	2 cut(s)	303, 340
StyI	CCWWGG	1 cut(s)	605
TaaI	ACNGT	1 cut(s)	705
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	2 cut(s)	476, 591
TasI	AATT	6 cut(s)	112, 136, 199, 734, 767, 779
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	2 cut(s)	220, 284
TscAI	CASTG	3 cut(s)	380, 494, 710
TseI	GCWGC	2 cut(s)	259, 521
TspDTI	ATGAA	4 cut(s)	219, 284, 344, 676
TspGWI	ACGGA	1 cut(s)	31
TspRI	CASTG	3 cut(s)	380, 494, 710
Tth111I	GACNNNGTC	1 cut(s)	794
VpaK11BI	GGWCC	1 cut(s)	609
XagI	CCTNNNNNAGG	1 cut(s)	616
XapI	RAATTY	1 cut(s)	734
XceI	RCATGY	1 cut(s)	817
XspI	CTAG	2 cut(s)	8, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.