Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0007302

Physical Location & Seq

Genomic Coordinates Reverse (-)

61246098 .. 61249270

Gene Structure 3173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG299400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAGTATGGTGAGGAGTCAAGGCAGCTCCGTCGCGGCGATGCGTACCCTCTCTTCTTCCTCCGCCACTTCTCGCTGTTCCACTCAACGTTCCGCCGCTAATTCTTCTTCCTCAGATGACACGAATTGTGGTACGCCAACATGGATCGGGAAGGGGCTTACTTGTGTTTGCTTCAAGGCAAAGGGAAATTATGAAAGGGTCTGCTTGAATCTGACACCCCTGCAGGAGGAAAGGATGAGAAGGTTGCAGCGCCGGATGAAGATTTACTTTGATTCTTCTAGGCCAGATCACCAGGAAGCGCTGAGAGCTCTATGGTCTGCTACATATCCCGGTCAAGAGCTTCATGGCTTGGTATCTGATCAGTGGAAAGAGATGGGATGGCAGGGAAGAGATCCATCCACTGATTTCAGAGGTGCTGGATTTATTTCTTTGGAGAACCTCTTGTTCTTCGCAAAGACATTTTCGACATCTTTCCAGTGCCTATTGAACAAGCAAGGAGGAAAGCCAGCTGCTTGGGAATATCCATTTGCTGTTGCCGGTGTAAATATTACATTTATGATCATGCAAATGCTTGACCTCGAAGCCACGAAACCAAGGTCCTTTATCAGGGCAGTTTTCTTACAGATGTTGTTAGAAAGCGAGTGGGCTTTTGACTTGCTCTATTGCGTCGCCTTCATGGTTATGGATAAACAGTGGCTTGAGAGAAATGCTACATACATGGAATTCAATGATGTTTTGAAATCAACTCGAGCTCAATTGGAGAGGGAATTACTAATGGACGATGTCTTGCGGATTGAAGACATGCCTTCTTACAGCCTTCTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

275

Amino Acids

31.37

Weight (kDa)

7.54

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	81 - 246	1.1e-52	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67400 AT3G43400
fragaria_vesca	FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860
malus_domestica	MD13G1118100.v1.1
prunus_persica	Prupe.1G226900_v2.0.a1 Prupe.1G226900_v2.0.a1
pyrus_communis	pycom13g10220 pycom13g10280
rosa_chinensis	RchiOBHm_Chr4g0430431
rosa_laevigata	RLG00000006977
rosa_multiflora	Rmu_sc0000131.1_g000042
rosa_roxburghii	Rroxscaffold_5G00372210
rosa_rugosa	Rorug04G0243100 Rorug04G0243200
rosa_samantha	Rh4AG299400 Rh4BG306200 Rh4CG322100 Rh4DG303600
rosa_wichuraiana	Rw4G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	35
AciI	CCGC	5 cut(s)	35, 63, 93, 96, 790
AclI	AACGTT	1 cut(s)	88
AclWI	GGATC	2 cut(s)	152, 386
AcsI	RAATTY	1 cut(s)	722
AfaI	GTAC	2 cut(s)	46, 133
AfeI	AGCGCT	1 cut(s)	300
AfiI	CCNNNNNNNGG	2 cut(s)	226, 606
AgsI	TTSAA	6 cut(s)	175, 208, 487, 727, 739, 797
AjnI	CCWGG	1 cut(s)	291
AluBI	AGCT	5 cut(s)	27, 308, 340, 509, 752
AluI	AGCT	5 cut(s)	27, 308, 340, 509, 752
Alw21I	GWGCWC	2 cut(s)	310, 754
AlwI	GGATC	2 cut(s)	152, 386
Ama87I	CYCGRG	1 cut(s)	747
Aor51HI	AGCGCT	1 cut(s)	300
AoxI	GGCC	1 cut(s)	281
ApeKI	GCWGC	3 cut(s)	24, 247, 509
ApoI	RAATTY	1 cut(s)	722
ArsI	GACNNNNNNTTYG	2 cut(s)	581, 613
AspLEI	GCGC	2 cut(s)	252, 301
AspS9I	GGNCC	1 cut(s)	597
AsuC2I	CCSGG	1 cut(s)	330
AsuHPI	GGTGA	2 cut(s)	22, 281
AvaI	CYCGRG	1 cut(s)	747
AvaII	GGWCC	1 cut(s)	597
BanII	GRGCYC	2 cut(s)	310, 754
BarI	GAAGNNNNNNTAC	2 cut(s)	37, 69
BbsI	GAAGAC	1 cut(s)	804
Bbv12I	GWGCWC	2 cut(s)	310, 754
BbvI	GCAGC	3 cut(s)	36, 259, 496
BccI	CCATC	3 cut(s)	367, 372, 403
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BciT130I	CCWGG	1 cut(s)	293
BclI	TGATCA	2 cut(s)	358, 558
BcnI	CCSGG	1 cut(s)	330
BfaI	CTAG	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	221
BfoI	RGCGCY	2 cut(s)	253, 302
BisI	GCNGC	5 cut(s)	25, 36, 96, 248, 510
BlsI	GCNGC	5 cut(s)	26, 37, 97, 249, 511
Bme1390I	CCNGG	2 cut(s)	293, 330
Bme18I	GGWCC	1 cut(s)	597
BmeT110I	CYCGRG	1 cut(s)	747
BmgT120I	GGNCC	1 cut(s)	597
BmrFI	CCNGG	2 cut(s)	293, 330
BmsI	GCATC	1 cut(s)	30
BpiI	GAAGAC	1 cut(s)	804
BpuEI	CTTGAG	1 cut(s)	719
BpuMI	CCSGG	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	593
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 606
Bse118I	RCCGGY	1 cut(s)	536
Bse1I	ACTGG	1 cut(s)	475
BseBI	CCWGG	1 cut(s)	293
BseDI	CCNNGG	1 cut(s)	593
BseGI	GGATG	4 cut(s)	240, 261, 383, 395
BseLI	CCNNNNNNNGG	2 cut(s)	226, 606
BseMII	CTCAG	2 cut(s)	126, 293
BseNI	ACTGG	1 cut(s)	475
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	3 cut(s)	36, 259, 496
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	283
BsiHKAI	GWGCWC	2 cut(s)	310, 754
BsiHKCI	CYCGRG	1 cut(s)	747
BsiSI	CCGG	3 cut(s)	253, 330, 537
BslI	CCNNNNNNNGG	2 cut(s)	226, 606
BsnI	GGCC	1 cut(s)	283
BsoBI	CYCGRG	1 cut(s)	747
Bsp1286I	GDGCHC	2 cut(s)	310, 754
Bsp143I	GATC	5 cut(s)	144, 286, 358, 391, 558
BspACI	CCGC	5 cut(s)	35, 63, 93, 96, 790
BspANI	GGCC	1 cut(s)	283
BspCNI	CTCAG	2 cut(s)	125, 294
BspFNI	CGCG	1 cut(s)	35
BspMAI	CTGCAG	1 cut(s)	225
BspPI	GGATC	2 cut(s)	152, 386
BsrFI	RCCGGY	1 cut(s)	536
BsrI	ACTGG	1 cut(s)	475
BssAI	RCCGGY	1 cut(s)	536
BssECI	CCNNGG	1 cut(s)	593
BssMI	GATC	5 cut(s)	144, 286, 358, 391, 558
BssT1I	CCWWGG	1 cut(s)	593
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	1 cut(s)	693
Bst6I	CTCTTC	2 cut(s)	58, 382
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	2 cut(s)	112, 302
BstENI	CCTNNNNNAGG	2 cut(s)	224, 604
BstF5I	GGATG	4 cut(s)	240, 261, 383, 395
BstFNI	CGCG	1 cut(s)	35
BstH2I	RGCGCY	2 cut(s)	253, 302
BstHHI	GCGC	2 cut(s)	252, 301
BstKTI	GATC	5 cut(s)	147, 289, 361, 394, 561
BstMBI	GATC	5 cut(s)	144, 286, 358, 391, 558
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstNI	CCWGG	1 cut(s)	293
BstNSI	RCATGY	1 cut(s)	805
BstSCI	CCNGG	2 cut(s)	291, 328
BstSFI	CTRYAG	1 cut(s)	221
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	3 cut(s)	36, 259, 496
BstV2I	GAAGAC	1 cut(s)	804
BstX2I	RGATCY	1 cut(s)	391
BstXI	CCANNNNNNTGG	1 cut(s)	513
BstYI	RGATCY	1 cut(s)	391
BsuRI	GGCC	1 cut(s)	283
BtgZI	GCGATG	1 cut(s)	53
BtsCI	GGATG	4 cut(s)	240, 261, 383, 395
BtsIMutI	CAGTG	4 cut(s)	368, 399, 482, 698
Cac8I	GCNNGC	1 cut(s)	507
CfoI	GCGC	2 cut(s)	252, 301
Cfr10I	RCCGGY	1 cut(s)	536
Cfr13I	GGNCC	1 cut(s)	597
CseI	GACGC	1 cut(s)	655
Csp6I	GTAC	2 cut(s)	45, 132
CviAII	CATG	6 cut(s)	141, 344, 562, 676, 718, 802
CviQI	GTAC	2 cut(s)	45, 132
DdeI	CTNAG	2 cut(s)	112, 302
DpnI	GATC	5 cut(s)	146, 288, 360, 393, 560
DpnII	GATC	5 cut(s)	144, 286, 358, 391, 558
Eam1104I	CTCTTC	2 cut(s)	58, 382
EarI	CTCTTC	2 cut(s)	58, 382
EciI	GGCGGA	2 cut(s)	52, 82
Ecl136II	GAGCTC	2 cut(s)	308, 752
Eco130I	CCWWGG	1 cut(s)	593
Eco24I	GRGCYC	2 cut(s)	310, 754
Eco47I	GGWCC	1 cut(s)	597
Eco47III	AGCGCT	1 cut(s)	300
Eco53kI	GAGCTC	2 cut(s)	308, 752
Eco88I	CYCGRG	1 cut(s)	747
EcoICRI	GAGCTC	2 cut(s)	308, 752
EcoNI	CCTNNNNNAGG	2 cut(s)	224, 604
EcoO109I	RGGNCCY	1 cut(s)	597
EcoRI	GAATTC	1 cut(s)	722
EcoRII	CCWGG	1 cut(s)	291
EcoT14I	CCWWGG	1 cut(s)	593
EcoT38I	GRGCYC	2 cut(s)	310, 754
ErhI	CCWWGG	1 cut(s)	593
FaeI	CATG	6 cut(s)	144, 347, 565, 679, 721, 805
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FatI	CATG	6 cut(s)	140, 343, 561, 675, 717, 801
FbaI	TGATCA	2 cut(s)	358, 558
Fnu4HI	GCNGC	5 cut(s)	25, 36, 96, 248, 510
FokI	GGATG	4 cut(s)	247, 268, 382, 390
FriOI	GRGCYC	2 cut(s)	310, 754
Fsp4HI	GCNGC	5 cut(s)	25, 36, 96, 248, 510
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	2 cut(s)	251, 300
GluI	GCNGC	5 cut(s)	25, 36, 96, 248, 510
HaeII	RGCGCY	2 cut(s)	253, 302
HaeIII	GGCC	1 cut(s)	283
HapII	CCGG	3 cut(s)	253, 330, 537
HgaI	GACGC	1 cut(s)	655
HhaI	GCGC	2 cut(s)	252, 301
Hin1II	CATG	6 cut(s)	144, 347, 565, 679, 721, 805
Hin6I	GCGC	2 cut(s)	250, 299
HinP1I	GCGC	2 cut(s)	250, 299
HinfI	GANTC	3 cut(s)	16, 208, 272
HpaII	CCGG	3 cut(s)	253, 330, 537
HphI	GGTGA	2 cut(s)	22, 281
Hpy188I	TCNGA	4 cut(s)	115, 213, 358, 410
Hpy188III	TCNNGA	2 cut(s)	148, 335
Hpy99I	CGWCG	2 cut(s)	35, 671
HpyAV	CCTTC	5 cut(s)	145, 234, 682, 816, 827
HpyCH4III	ACNGT	1 cut(s)	693
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	3 cut(s)	223, 247, 565
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	2 cut(s)	112, 302
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	6 cut(s)	144, 347, 565, 679, 721, 805
HspAI	GCGC	2 cut(s)	250, 299
Ksp22I	TGATCA	2 cut(s)	358, 558
Kzo9I	GATC	5 cut(s)	144, 286, 358, 391, 558
LmnI	GCTCC	1 cut(s)	32
Lsp1109I	GCAGC	3 cut(s)	36, 259, 496
LweI	GCATC	1 cut(s)	30
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	1 cut(s)	88
MalI	GATC	5 cut(s)	146, 288, 360, 393, 560
MboI	GATC	5 cut(s)	144, 286, 358, 391, 558
MboII	GAAGA	9 cut(s)	45, 48, 96, 99, 267, 271, 399, 439, 809
MfeI	CAATTG	1 cut(s)	755
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	2 cut(s)	310, 754
MluCI	AATT	6 cut(s)	100, 124, 187, 722, 755, 767
MlyI	GAGTC	1 cut(s)	25
MslI	CAYNNNNRTG	2 cut(s)	566, 680
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	3 cut(s)	253, 330, 537
MspR9I	CCNGG	2 cut(s)	293, 330
MunI	CAATTG	1 cut(s)	755
MvaI	CCWGG	1 cut(s)	293
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	305
NciI	CCSGG	1 cut(s)	330
NdeII	GATC	5 cut(s)	144, 286, 358, 391, 558
NlaIII	CATG	6 cut(s)	144, 347, 565, 679, 721, 805
NspI	RCATGY	1 cut(s)	805
PaeR7I	CTCGAG	1 cut(s)	747
PfeI	GAWTC	2 cut(s)	208, 272
PflFI	GACNNNGTC	1 cut(s)	782
PkrI	GCNGC	5 cut(s)	26, 37, 97, 249, 511
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
PpuMI	RGGWCCY	1 cut(s)	597
Psp124BI	GAGCTC	2 cut(s)	310, 754
Psp1406I	AACGTT	1 cut(s)	88
Psp5II	RGGWCCY	1 cut(s)	597
Psp6I	CCWGG	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	291
PspPI	GGNCC	1 cut(s)	597
PspPPI	RGGWCCY	1 cut(s)	597
PspXI	VCTCGAGB	1 cut(s)	747
PstI	CTGCAG	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	391
PsyI	GACNNNGTC	1 cut(s)	782
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	2 cut(s)	46, 133
RsaNI	GTAC	2 cut(s)	45, 132
RseI	CAYNNNNRTG	2 cut(s)	566, 680
SacI	GAGCTC	2 cut(s)	310, 754
SatI	GCNGC	5 cut(s)	25, 36, 96, 248, 510
Sau3AI	GATC	5 cut(s)	144, 286, 358, 391, 558
Sau96I	GGNCC	1 cut(s)	597
SbfI	CCTGCAGG	1 cut(s)	225
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	2 cut(s)	293, 330
SdaI	CCTGCAGG	1 cut(s)	225
SduI	GDGCHC	2 cut(s)	310, 754
SfaNI	GCATC	1 cut(s)	30
SfcI	CTRYAG	1 cut(s)	221
Sfr274I	CTCGAG	1 cut(s)	747
SinI	GGWCC	1 cut(s)	597
SlaI	CTCGAG	1 cut(s)	747
SmiMI	CAYNNNNRTG	2 cut(s)	566, 680
SmlI	CTYRAG	2 cut(s)	698, 747
SmoI	CTYRAG	2 cut(s)	698, 747
Sse8387I	CCTGCAGG	1 cut(s)	225
Sse9I	AATT	6 cut(s)	100, 124, 187, 722, 755, 767
SsiI	CCGC	5 cut(s)	35, 63, 93, 96, 790
SspI	AATATT	1 cut(s)	547
SspMI	CTAG	1 cut(s)	279
SstI	GAGCTC	2 cut(s)	310, 754
StyD4I	CCNGG	2 cut(s)	291, 328
StyI	CCWWGG	1 cut(s)	593
TaaI	ACNGT	1 cut(s)	693
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	3 cut(s)	464, 579, 748
TasI	AATT	6 cut(s)	100, 124, 187, 722, 755, 767
TauI	GCSGC	2 cut(s)	38, 98
TfiI	GAWTC	2 cut(s)	208, 272
TscAI	CASTG	4 cut(s)	368, 406, 482, 698
TseI	GCWGC	3 cut(s)	24, 247, 509
TspDTI	ATGAA	4 cut(s)	207, 272, 332, 664
TspGWI	ACGGA	1 cut(s)	19
TspRI	CASTG	4 cut(s)	368, 406, 482, 698
Tth111I	GACNNNGTC	1 cut(s)	782
VpaK11BI	GGWCC	1 cut(s)	597
XagI	CCTNNNNNAGG	2 cut(s)	224, 604
XapI	RAATTY	1 cut(s)	722
XceI	RCATGY	1 cut(s)	805
XhoI	CTCGAG	1 cut(s)	747
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.