Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0007302

Physical Location & Seq

Genomic Coordinates Reverse (-)

47617716 .. 47620888

Gene Structure 3173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG306200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAGTATGGTGAGGAGTCAAGGCAGCTCCGTCGCGGCGATGCGTACCCTCTCTTCTTCCTCCGCCACTTCTCGCTGTTCCACTCAACGTTCCGCCGCTAATTCTTCTTCCTCAGATGACACGAATTGTGGTACGCCAACATGGATCGGGAAGGGGCTTACTTGTGTTTGCTTCAAGGCAAAGGGAAATTATGAAAGGGTCTGCTTGAATCTGACACCCCTGCAGGAGGAAAGGATGAGAAGGTTGCAGCGCCGGATGAAGATTTACTTTGATTCTTCTAGGCCAGATCACCAGGAAGCGCTGAGAGCTCTATGGTCTGCTACATATCCCGGTCAAGAGCTTCATGGCTTGGTATCTGATCAGTGGAAAGAGATGGGATGGCAGGGAAGAGATCCATCCACTGATTTCAGAGGTGCTGGATTTATTTCTTTGGAGAACCTCTTGTTCTTCGCAAAGACATTTTCGACATCTTTCCAGTGCCTATTGAACAAGCAAGGAGGAAAGCCAGCTGCTTGGGAATATCCATTTGCTGTTGCCGGTGTAAATATTACATTTATGATCATGCAAATGCTTGACCTCGAAGCCACGAAACCAAGGTCCTTTATCAGGGCAGTTTTCTTACAGATGTTGTTAGAAAGCGAGTGGGCTTTTGACTTGCTCTATTGCGTCGCCTTCATGGTTATGGATAAACAGTGGCTTGAGAGAAATGCTACATACATGGAATTCAATGATGTTTTGAAATCAACTCGAGCTCAATTGGAGAGGGAATTACTAATGGACGATGTCTTGCGGATTGAAGACATGCCTTCTTACAGCCTTCTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

275

Amino Acids

31.37

Weight (kDa)

7.54

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELMO_CED12	PF04727	81 - 246	1.1e-52	ELMO/CED-12 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67400 AT3G43400
fragaria_vesca	FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860
malus_domestica	MD13G1118100.v1.1
prunus_persica	Prupe.1G226900_v2.0.a1 Prupe.1G226900_v2.0.a1
pyrus_communis	pycom13g10220 pycom13g10280
rosa_chinensis	RchiOBHm_Chr4g0430431
rosa_laevigata	RLG00000006977
rosa_multiflora	Rmu_sc0000131.1_g000042
rosa_roxburghii	Rroxscaffold_5G00372210
rosa_rugosa	Rorug04G0243100 Rorug04G0243200
rosa_samantha	Rh4AG299400 Rh4BG306200 Rh4CG322100 Rh4DG303600
rosa_wichuraiana	Rw4G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	35
AciI	CCGC	5 cut(s)	35, 63, 93, 96, 790
AclI	AACGTT	1 cut(s)	88
AclWI	GGATC	2 cut(s)	152, 386
AcsI	RAATTY	1 cut(s)	722
AfaI	GTAC	2 cut(s)	46, 133
AfeI	AGCGCT	1 cut(s)	300
AfiI	CCNNNNNNNGG	2 cut(s)	226, 606
AgsI	TTSAA	6 cut(s)	175, 208, 487, 727, 739, 797
AjnI	CCWGG	1 cut(s)	291
AluBI	AGCT	5 cut(s)	27, 308, 340, 509, 752
AluI	AGCT	5 cut(s)	27, 308, 340, 509, 752
Alw21I	GWGCWC	2 cut(s)	310, 754
AlwI	GGATC	2 cut(s)	152, 386
Ama87I	CYCGRG	1 cut(s)	747
Aor51HI	AGCGCT	1 cut(s)	300
AoxI	GGCC	1 cut(s)	281
ApeKI	GCWGC	3 cut(s)	24, 247, 509
ApoI	RAATTY	1 cut(s)	722
ArsI	GACNNNNNNTTYG	2 cut(s)	581, 613
AspLEI	GCGC	2 cut(s)	252, 301
AspS9I	GGNCC	1 cut(s)	597
AsuC2I	CCSGG	1 cut(s)	330
AsuHPI	GGTGA	2 cut(s)	22, 281
AvaI	CYCGRG	1 cut(s)	747
AvaII	GGWCC	1 cut(s)	597
BanII	GRGCYC	2 cut(s)	310, 754
BarI	GAAGNNNNNNTAC	2 cut(s)	37, 69
BbsI	GAAGAC	1 cut(s)	804
Bbv12I	GWGCWC	2 cut(s)	310, 754
BbvI	GCAGC	3 cut(s)	36, 259, 496
BccI	CCATC	3 cut(s)	367, 372, 403
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BciT130I	CCWGG	1 cut(s)	293
BclI	TGATCA	2 cut(s)	358, 558
BcnI	CCSGG	1 cut(s)	330
BfaI	CTAG	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	221
BfoI	RGCGCY	2 cut(s)	253, 302
BisI	GCNGC	5 cut(s)	25, 36, 96, 248, 510
BlsI	GCNGC	5 cut(s)	26, 37, 97, 249, 511
Bme1390I	CCNGG	2 cut(s)	293, 330
Bme18I	GGWCC	1 cut(s)	597
BmeT110I	CYCGRG	1 cut(s)	747
BmgT120I	GGNCC	1 cut(s)	597
BmrFI	CCNGG	2 cut(s)	293, 330
BmsI	GCATC	1 cut(s)	30
BpiI	GAAGAC	1 cut(s)	804
BpuEI	CTTGAG	1 cut(s)	719
BpuMI	CCSGG	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	593
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 606
Bse118I	RCCGGY	1 cut(s)	536
Bse1I	ACTGG	1 cut(s)	475
BseBI	CCWGG	1 cut(s)	293
BseDI	CCNNGG	1 cut(s)	593
BseGI	GGATG	4 cut(s)	240, 261, 383, 395
BseLI	CCNNNNNNNGG	2 cut(s)	226, 606
BseMII	CTCAG	2 cut(s)	126, 293
BseNI	ACTGG	1 cut(s)	475
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	3 cut(s)	36, 259, 496
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	283
BsiHKAI	GWGCWC	2 cut(s)	310, 754
BsiHKCI	CYCGRG	1 cut(s)	747
BsiSI	CCGG	3 cut(s)	253, 330, 537
BslI	CCNNNNNNNGG	2 cut(s)	226, 606
BsnI	GGCC	1 cut(s)	283
BsoBI	CYCGRG	1 cut(s)	747
Bsp1286I	GDGCHC	2 cut(s)	310, 754
Bsp143I	GATC	5 cut(s)	144, 286, 358, 391, 558
BspACI	CCGC	5 cut(s)	35, 63, 93, 96, 790
BspANI	GGCC	1 cut(s)	283
BspCNI	CTCAG	2 cut(s)	125, 294
BspFNI	CGCG	1 cut(s)	35
BspMAI	CTGCAG	1 cut(s)	225
BspPI	GGATC	2 cut(s)	152, 386
BsrFI	RCCGGY	1 cut(s)	536
BsrI	ACTGG	1 cut(s)	475
BssAI	RCCGGY	1 cut(s)	536
BssECI	CCNNGG	1 cut(s)	593
BssMI	GATC	5 cut(s)	144, 286, 358, 391, 558
BssT1I	CCWWGG	1 cut(s)	593
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	1 cut(s)	693
Bst6I	CTCTTC	2 cut(s)	58, 382
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	2 cut(s)	112, 302
BstENI	CCTNNNNNAGG	2 cut(s)	224, 604
BstF5I	GGATG	4 cut(s)	240, 261, 383, 395
BstFNI	CGCG	1 cut(s)	35
BstH2I	RGCGCY	2 cut(s)	253, 302
BstHHI	GCGC	2 cut(s)	252, 301
BstKTI	GATC	5 cut(s)	147, 289, 361, 394, 561
BstMBI	GATC	5 cut(s)	144, 286, 358, 391, 558
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstNI	CCWGG	1 cut(s)	293
BstNSI	RCATGY	1 cut(s)	805
BstSCI	CCNGG	2 cut(s)	291, 328
BstSFI	CTRYAG	1 cut(s)	221
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	3 cut(s)	36, 259, 496
BstV2I	GAAGAC	1 cut(s)	804
BstX2I	RGATCY	1 cut(s)	391
BstXI	CCANNNNNNTGG	1 cut(s)	513
BstYI	RGATCY	1 cut(s)	391
BsuRI	GGCC	1 cut(s)	283
BtgZI	GCGATG	1 cut(s)	53
BtsCI	GGATG	4 cut(s)	240, 261, 383, 395
BtsIMutI	CAGTG	4 cut(s)	368, 399, 482, 698
Cac8I	GCNNGC	1 cut(s)	507
CfoI	GCGC	2 cut(s)	252, 301
Cfr10I	RCCGGY	1 cut(s)	536
Cfr13I	GGNCC	1 cut(s)	597
CseI	GACGC	1 cut(s)	655
Csp6I	GTAC	2 cut(s)	45, 132
CviAII	CATG	6 cut(s)	141, 344, 562, 676, 718, 802
CviQI	GTAC	2 cut(s)	45, 132
DdeI	CTNAG	2 cut(s)	112, 302
DpnI	GATC	5 cut(s)	146, 288, 360, 393, 560
DpnII	GATC	5 cut(s)	144, 286, 358, 391, 558
Eam1104I	CTCTTC	2 cut(s)	58, 382
EarI	CTCTTC	2 cut(s)	58, 382
EciI	GGCGGA	2 cut(s)	52, 82
Ecl136II	GAGCTC	2 cut(s)	308, 752
Eco130I	CCWWGG	1 cut(s)	593
Eco24I	GRGCYC	2 cut(s)	310, 754
Eco47I	GGWCC	1 cut(s)	597
Eco47III	AGCGCT	1 cut(s)	300
Eco53kI	GAGCTC	2 cut(s)	308, 752
Eco88I	CYCGRG	1 cut(s)	747
EcoICRI	GAGCTC	2 cut(s)	308, 752
EcoNI	CCTNNNNNAGG	2 cut(s)	224, 604
EcoO109I	RGGNCCY	1 cut(s)	597
EcoRI	GAATTC	1 cut(s)	722
EcoRII	CCWGG	1 cut(s)	291
EcoT14I	CCWWGG	1 cut(s)	593
EcoT38I	GRGCYC	2 cut(s)	310, 754
ErhI	CCWWGG	1 cut(s)	593
FaeI	CATG	6 cut(s)	144, 347, 565, 679, 721, 805
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FatI	CATG	6 cut(s)	140, 343, 561, 675, 717, 801
FbaI	TGATCA	2 cut(s)	358, 558
Fnu4HI	GCNGC	5 cut(s)	25, 36, 96, 248, 510
FokI	GGATG	4 cut(s)	247, 268, 382, 390
FriOI	GRGCYC	2 cut(s)	310, 754
Fsp4HI	GCNGC	5 cut(s)	25, 36, 96, 248, 510
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	2 cut(s)	251, 300
GluI	GCNGC	5 cut(s)	25, 36, 96, 248, 510
HaeII	RGCGCY	2 cut(s)	253, 302
HaeIII	GGCC	1 cut(s)	283
HapII	CCGG	3 cut(s)	253, 330, 537
HgaI	GACGC	1 cut(s)	655
HhaI	GCGC	2 cut(s)	252, 301
Hin1II	CATG	6 cut(s)	144, 347, 565, 679, 721, 805
Hin6I	GCGC	2 cut(s)	250, 299
HinP1I	GCGC	2 cut(s)	250, 299
HinfI	GANTC	3 cut(s)	16, 208, 272
HpaII	CCGG	3 cut(s)	253, 330, 537
HphI	GGTGA	2 cut(s)	22, 281
Hpy188I	TCNGA	4 cut(s)	115, 213, 358, 410
Hpy188III	TCNNGA	2 cut(s)	148, 335
Hpy99I	CGWCG	2 cut(s)	35, 671
HpyAV	CCTTC	5 cut(s)	145, 234, 682, 816, 827
HpyCH4III	ACNGT	1 cut(s)	693
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	3 cut(s)	223, 247, 565
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	2 cut(s)	112, 302
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	6 cut(s)	144, 347, 565, 679, 721, 805
HspAI	GCGC	2 cut(s)	250, 299
Ksp22I	TGATCA	2 cut(s)	358, 558
Kzo9I	GATC	5 cut(s)	144, 286, 358, 391, 558
LmnI	GCTCC	1 cut(s)	32
Lsp1109I	GCAGC	3 cut(s)	36, 259, 496
LweI	GCATC	1 cut(s)	30
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	1 cut(s)	88
MalI	GATC	5 cut(s)	146, 288, 360, 393, 560
MboI	GATC	5 cut(s)	144, 286, 358, 391, 558
MboII	GAAGA	9 cut(s)	45, 48, 96, 99, 267, 271, 399, 439, 809
MfeI	CAATTG	1 cut(s)	755
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	2 cut(s)	310, 754
MluCI	AATT	6 cut(s)	100, 124, 187, 722, 755, 767
MlyI	GAGTC	1 cut(s)	25
MslI	CAYNNNNRTG	2 cut(s)	566, 680
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	3 cut(s)	253, 330, 537
MspR9I	CCNGG	2 cut(s)	293, 330
MunI	CAATTG	1 cut(s)	755
MvaI	CCWGG	1 cut(s)	293
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	305
NciI	CCSGG	1 cut(s)	330
NdeII	GATC	5 cut(s)	144, 286, 358, 391, 558
NlaIII	CATG	6 cut(s)	144, 347, 565, 679, 721, 805
NspI	RCATGY	1 cut(s)	805
PaeR7I	CTCGAG	1 cut(s)	747
PfeI	GAWTC	2 cut(s)	208, 272
PflFI	GACNNNGTC	1 cut(s)	782
PkrI	GCNGC	5 cut(s)	26, 37, 97, 249, 511
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
PpuMI	RGGWCCY	1 cut(s)	597
Psp124BI	GAGCTC	2 cut(s)	310, 754
Psp1406I	AACGTT	1 cut(s)	88
Psp5II	RGGWCCY	1 cut(s)	597
Psp6I	CCWGG	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	291
PspPI	GGNCC	1 cut(s)	597
PspPPI	RGGWCCY	1 cut(s)	597
PspXI	VCTCGAGB	1 cut(s)	747
PstI	CTGCAG	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	391
PsyI	GACNNNGTC	1 cut(s)	782
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	2 cut(s)	46, 133
RsaNI	GTAC	2 cut(s)	45, 132
RseI	CAYNNNNRTG	2 cut(s)	566, 680
SacI	GAGCTC	2 cut(s)	310, 754
SatI	GCNGC	5 cut(s)	25, 36, 96, 248, 510
Sau3AI	GATC	5 cut(s)	144, 286, 358, 391, 558
Sau96I	GGNCC	1 cut(s)	597
SbfI	CCTGCAGG	1 cut(s)	225
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	2 cut(s)	293, 330
SdaI	CCTGCAGG	1 cut(s)	225
SduI	GDGCHC	2 cut(s)	310, 754
SfaNI	GCATC	1 cut(s)	30
SfcI	CTRYAG	1 cut(s)	221
Sfr274I	CTCGAG	1 cut(s)	747
SinI	GGWCC	1 cut(s)	597
SlaI	CTCGAG	1 cut(s)	747
SmiMI	CAYNNNNRTG	2 cut(s)	566, 680
SmlI	CTYRAG	2 cut(s)	698, 747
SmoI	CTYRAG	2 cut(s)	698, 747
Sse8387I	CCTGCAGG	1 cut(s)	225
Sse9I	AATT	6 cut(s)	100, 124, 187, 722, 755, 767
SsiI	CCGC	5 cut(s)	35, 63, 93, 96, 790
SspI	AATATT	1 cut(s)	547
SspMI	CTAG	1 cut(s)	279
SstI	GAGCTC	2 cut(s)	310, 754
StyD4I	CCNGG	2 cut(s)	291, 328
StyI	CCWWGG	1 cut(s)	593
TaaI	ACNGT	1 cut(s)	693
TaiI	ACGT	1 cut(s)	91
TaqI	TCGA	3 cut(s)	464, 579, 748
TasI	AATT	6 cut(s)	100, 124, 187, 722, 755, 767
TauI	GCSGC	2 cut(s)	38, 98
TfiI	GAWTC	2 cut(s)	208, 272
TscAI	CASTG	4 cut(s)	368, 406, 482, 698
TseI	GCWGC	3 cut(s)	24, 247, 509
TspDTI	ATGAA	4 cut(s)	207, 272, 332, 664
TspGWI	ACGGA	1 cut(s)	19
TspRI	CASTG	4 cut(s)	368, 406, 482, 698
Tth111I	GACNNNGTC	1 cut(s)	782
VpaK11BI	GGWCC	1 cut(s)	597
XagI	CCTNNNNNAGG	2 cut(s)	224, 604
XapI	RAATTY	1 cut(s)	722
XceI	RCATGY	1 cut(s)	805
XhoI	CTCGAG	1 cut(s)	747
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.