Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007302

Physical Location & Seq

Genomic Coordinates Reverse (-)

41190401 .. 41191188

Gene Structure 788 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0243200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGGGGCCTCATCCAGCTCTTCATCGAAATCCACCAAAAACACGGGTGTCAAAGACACTGCATTAACAGGAATAGGCAACCTCCTCAGGCTCCTCCCTACCGGCACGGTATTCTTGTTCCAGTTCCTCAACCCCGTTTTAACCAACAATGGCGAATGCAACATGTCCGTCAACAAGATTCTAAGCGCCATTCTCATTGTCGTTTCCGCCTTCTCTTGCTGCTTTGCTTCCTTCACCGACAGTTACACCGGCAGTGATGGACAAATTCACTATGGAATTGCAACAACAAAGGGTCTTTGGCCCTCAACCAGTTCTGGCTCTGTGGACTTGTCTGCTTACAAGCTTCGGGTTGGGGACTTTGTGCATGCCTTCTTTTCCTTGATCGTGTTTGCAGGGCTATCACTTTTGGATTCCAACACTGTGAGGTGCTTCTATCCTGCATTTGAGTCCACTGAGAAGGTTCTGCTCCAGGCGTTGCCTCCTGTAATTGGCACTATTGCTGGTGCTGTCTTTGTTCTGTTCCCTAATACACGCCACGGAATTGGGTACCCTTCTTCAAGTTCAGATTCTTCAAAAGACTCTGAGGACTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006928 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010639 GO:0016043 GO:0017022 GO:0030100 GO:0030587 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032879 GO:0032956 GO:0032970 GO:0033043 GO:0040011 GO:0043254 GO:0044087 GO:0044424 GO:0044464 GO:0045159 GO:0048519 GO:0048523 GO:0048856 GO:0048870 GO:0050764 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051129 GO:0051179 GO:0051493 GO:0051494 GO:0051674 GO:0051703 GO:0051704 GO:0060627 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0090702 GO:0099120 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELMO_CED12

Protein Analysis

197

Amino Acids

20.76

Weight (kDa)

6.25

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF679	PF05078	24 - 183	3.5e-63	Protein of unknown function (DUF679)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67400 AT3G43400
fragaria_vesca	FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860 FvH4_4g23860
malus_domestica	MD13G1118100.v1.1
prunus_persica	Prupe.1G226900_v2.0.a1 Prupe.1G226900_v2.0.a1
pyrus_communis	pycom13g10220 pycom13g10280
rosa_chinensis	RchiOBHm_Chr4g0430431
rosa_laevigata	RLG00000006977
rosa_multiflora	Rmu_sc0000131.1_g000042
rosa_roxburghii	Rroxscaffold_5G00372210
rosa_rugosa	Rorug04G0243100 Rorug04G0243200
rosa_samantha	Rh4AG299400 Rh4BG306200 Rh4CG322100 Rh4DG303600
rosa_wichuraiana	Rw4G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	546
AccB1I	GGYRCC	1 cut(s)	546
AciI	CCGC	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	264
AfaI	GTAC	1 cut(s)	548
AfiI	CCNNNNNNNGG	1 cut(s)	488
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	2 cut(s)	558, 573
AjnI	CCWGG	1 cut(s)	468
AluBI	AGCT	2 cut(s)	18, 343
AluI	AGCT	2 cut(s)	18, 343
AoxI	GGCC	2 cut(s)	6, 299
ApeKI	GCWGC	1 cut(s)	219
ApoI	RAATTY	1 cut(s)	264
Asp718I	GGTACC	1 cut(s)	546
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	2 cut(s)	6, 300
AsuHPI	GGTGA	1 cut(s)	226
AxyI	CCTNAGG	1 cut(s)	86
BanI	GGYRCC	1 cut(s)	546
BbvI	GCAGC	1 cut(s)	206
BccI	CCATC	1 cut(s)	251
BciT130I	CCWGG	1 cut(s)	470
BfaI	CTAG	1 cut(s)	592
BfoI	RGCGCY	1 cut(s)	189
BisI	GCNGC	1 cut(s)	220
BlsI	GCNGC	1 cut(s)	221
Bme1390I	CCNGG	1 cut(s)	470
BmgT120I	GGNCC	2 cut(s)	6, 300
BmiI	GGNNCC	3 cut(s)	7, 92, 548
BmrFI	CCNGG	1 cut(s)	470
BpmI	CTGGAG	1 cut(s)	452
BsaJI	CCNNGG	1 cut(s)	535
Bsc4I	CCNNNNNNNGG	1 cut(s)	488
Bse118I	RCCGGY	2 cut(s)	101, 248
Bse1I	ACTGG	2 cut(s)	121, 309
Bse21I	CCTNAGG	1 cut(s)	86
BseBI	CCWGG	1 cut(s)	470
BseDI	CCNNGG	1 cut(s)	535
BseGI	GGATG	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	488
BseMII	CTCAG	3 cut(s)	100, 444, 573
BseNI	ACTGG	2 cut(s)	121, 309
BseRI	GAGGAG	2 cut(s)	74, 83
BseXI	GCAGC	1 cut(s)	206
BshFI	GGCC	2 cut(s)	8, 301
BshNI	GGYRCC	1 cut(s)	546
BsiSI	CCGG	2 cut(s)	102, 249
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	488
BsmFI	GGGAC	1 cut(s)	368
BsmI	GAATGC	1 cut(s)	161
BsnI	GGCC	2 cut(s)	8, 301
Bsp143I	GATC	1 cut(s)	381
BspACI	CCGC	1 cut(s)	207
BspANI	GGCC	2 cut(s)	8, 301
BspCNI	CTCAG	3 cut(s)	99, 445, 574
BspLI	GGNNCC	3 cut(s)	7, 92, 548
BspQI	GCTCTTC	1 cut(s)	25
BspT107I	GGYRCC	1 cut(s)	546
BsrFI	RCCGGY	2 cut(s)	101, 248
BsrI	ACTGG	2 cut(s)	121, 309
BssAI	RCCGGY	2 cut(s)	101, 248
BssECI	CCNNGG	1 cut(s)	535
BssMI	GATC	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	470
Bst4CI	ACNGT	3 cut(s)	109, 242, 421
Bst6I	CTCTTC	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	4 cut(s)	86, 182, 453, 582
BstDSI	CCRYGG	1 cut(s)	535
BstF5I	GGATG	1 cut(s)	11
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	1 cut(s)	384
BstMBI	GATC	1 cut(s)	381
BstNI	CCWGG	1 cut(s)	470
BstNSI	RCATGY	2 cut(s)	166, 368
BstSCI	CCNGG	1 cut(s)	468
BstV1I	GCAGC	1 cut(s)	206
BstXI	CCANNNNNNTGG	1 cut(s)	542
Bsu36I	CCTNAGG	1 cut(s)	86
BsuRI	GGCC	2 cut(s)	8, 301
BtgI	CCRYGG	1 cut(s)	535
BtsCI	GGATG	1 cut(s)	11
BtsI	GCAGTG	2 cut(s)	57, 259
BtsIMutI	CAGTG	4 cut(s)	57, 259, 417, 450
Cac8I	GCNNGC	1 cut(s)	366
CfoI	GCGC	1 cut(s)	188
Cfr10I	RCCGGY	2 cut(s)	101, 248
Cfr13I	GGNCC	2 cut(s)	6, 300
Csp6I	GTAC	1 cut(s)	547
CviAII	CATG	2 cut(s)	163, 365
CviJI	RGCY	7 cut(s)	8, 18, 91, 301, 318, 343, 397
CviKI_1	RGCY	7 cut(s)	8, 18, 91, 301, 318, 343, 397
CviQI	GTAC	1 cut(s)	547
DdeI	CTNAG	4 cut(s)	86, 182, 453, 582
DpnI	GATC	1 cut(s)	383
DpnII	GATC	1 cut(s)	381
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
EciI	GGCGGA	1 cut(s)	196
Eco81I	CCTNAGG	1 cut(s)	86
EcoO109I	RGGNCCY	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	468
FaeI	CATG	2 cut(s)	166, 368
FaiI	YATR	3 cut(s)	164, 273, 366
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	2 cut(s)	162, 364
Fnu4HI	GCNGC	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	220
FspBI	CTAG	1 cut(s)	592
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	1 cut(s)	220
GsuI	CTGGAG	1 cut(s)	452
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	8, 301
HapII	CCGG	2 cut(s)	102, 249
HhaI	GCGC	1 cut(s)	188
Hin1II	CATG	2 cut(s)	166, 368
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	6 cut(s)	178, 410, 446, 566, 578, 587
HpaII	CCGG	2 cut(s)	102, 249
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	3 cut(s)	172, 325, 450
Hpy188I	TCNGA	2 cut(s)	565, 583
Hpy8I	GTNNAC	3 cut(s)	172, 325, 450
HpyAV	CCTTC	5 cut(s)	220, 241, 379, 451, 561
HpyCH4III	ACNGT	3 cut(s)	109, 242, 421
HpyCH4V	TGCA	6 cut(s)	62, 159, 281, 364, 392, 440
HpyF3I	CTNAG	4 cut(s)	86, 182, 453, 582
Hsp92II	CATG	2 cut(s)	166, 368
HspAI	GCGC	1 cut(s)	186
KpnI	GGTACC	1 cut(s)	550
Kzo9I	GATC	1 cut(s)	381
LguI	GCTCTTC	1 cut(s)	25
LmnI	GCTCC	2 cut(s)	96, 471
Lsp1109I	GCAGC	1 cut(s)	206
MaeI	CTAG	1 cut(s)	592
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	1 cut(s)	383
MboI	GATC	1 cut(s)	381
MboII	GAAGA	3 cut(s)	12, 546, 561
MluCI	AATT	4 cut(s)	264, 276, 486, 540
MlyI	GAGTC	3 cut(s)	455, 572, 581
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	9 cut(s)	19, 92, 95, 104, 137, 313, 417, 489, 577
MseI	TTAA	2 cut(s)	65, 140
MspI	CCGG	2 cut(s)	102, 249
MspR9I	CCNGG	1 cut(s)	470
Mva1269I	GAATGC	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	470
NdeII	GATC	1 cut(s)	381
NlaIII	CATG	2 cut(s)	166, 368
NlaIV	GGNNCC	3 cut(s)	7, 92, 548
NspI	RCATGY	2 cut(s)	166, 368
PaeI	GCATGC	1 cut(s)	368
PciI	ACATGT	1 cut(s)	162
PciSI	GCTCTTC	1 cut(s)	25
PctI	GAATGC	1 cut(s)	161
PfeI	GAWTC	3 cut(s)	178, 410, 566
PkrI	GCNGC	1 cut(s)	221
PleI	GAGTC	3 cut(s)	454, 572, 581
PpsI	GAGTC	3 cut(s)	454, 572, 581
PscI	ACATGT	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	468
PspGI	CCWGG	1 cut(s)	468
PspN4I	GGNNCC	3 cut(s)	7, 92, 548
PspPI	GGNCC	2 cut(s)	6, 300
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
SapI	GCTCTTC	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	65, 140
SatI	GCNGC	1 cut(s)	220
Sau3AI	GATC	1 cut(s)	381
Sau96I	GGNCC	2 cut(s)	6, 300
SchI	GAGTC	3 cut(s)	455, 572, 581
ScrFI	CCNGG	1 cut(s)	470
SetI	ASST	5 cut(s)	20, 84, 345, 428, 462
SphI	GCATGC	1 cut(s)	368
Sse9I	AATT	4 cut(s)	264, 276, 486, 540
SsiI	CCGC	1 cut(s)	207
SspMI	CTAG	1 cut(s)	592
StyD4I	CCNGG	1 cut(s)	468
TaaI	ACNGT	3 cut(s)	109, 242, 421
TaqI	TCGA	1 cut(s)	26
TasI	AATT	4 cut(s)	264, 276, 486, 540
TfiI	GAWTC	3 cut(s)	178, 410, 566
Tru1I	TTAA	2 cut(s)	65, 140
Tru9I	TTAA	2 cut(s)	65, 140
TscAI	CASTG	4 cut(s)	64, 259, 424, 457
TseI	GCWGC	1 cut(s)	219
TspDTI	ATGAA	1 cut(s)	12
TspGWI	ACGGA	2 cut(s)	157, 552
TspRI	CASTG	4 cut(s)	64, 259, 424, 457
XapI	RAATTY	1 cut(s)	264
XceI	RCATGY	2 cut(s)	166, 368
XspI	CTAG	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.