AT3G44160

Surface antigen

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015354
Physical Location & Seq
Reverse (-)
15888840 .. 15891988
3149 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G44160.1

Sequence Viewer

Length: 1089 bp
ATGGGAGCTCAGAAGAGTATCCACGCTGGTAGAGCCAAGATTGATGTTAATGTGGACTTCACTCACAAGCTTTGTACTTCTTTAATGTTTCCTGCTTTCAGGGACACTAGCAGTCCTCTTTCTCTAGTGATTGGCAGCCTCTGTATCAAACATCCAAATTTGTTTGGAGGAAGCGAGAAGCTTGATGTATCATGGGATAAAGGATTGTATGATTCCAATGTACTTGTGGCTTTTAGGAGACCTAGACCTGAATGGCGTCCACAACAGTGTTTCTTCATACAGCATTCTCTCTCACCCGAGATAGGGGTCCACGGCACCCCAGTCGACAACTTTTCTCGGTCAGGAAGTGGAGGTGTAAATCTGTCTAAATTGGCTCTTGGTTTAGACTTGAGTGAGCCAGCGAGTTCAAAATGGAGCAGCACAACCAGCATAAAGTTTGAGCATGTGCGTCCGATTAACGATGATGGACGCGCGATAACCAGAGATCTGGACGGATTTCCTATAACATGCAGTGGAAATACCCATGACAGTATGGTAGTTTTAAAGCAAGAATCCCGGTTTGCAAAGGCTACCGACCAAGGTCTTTCTCATTTTAGCATGCAAATAGAACAAGGTATTCCGGTTGTGTCCAAGTGGCTTATCTTCAACCGTTTCAAATTTGTTGCATCAAAAGGTGTCAGGTTTGGACCGGCTTTTCTCTTAGCAAGCTTGACAGGTGGTTCAATTGTAGGAGACATGGCACCTTATCAAGCATTTGCCATTGGTGGGCTAGGCAGTGTTCGCGGATATGGTGAGGGTGCTGTTGGATCCGGTCGGTCATGCCTTGTTGCCAATACAGAATTGGCGTTACCTTTGAACAAGATGACAGAAGGGACCATCTTCTTGGATTGTGGAACAGACCTAGGCTCAAGCCGCCTTGTCCCCGGAAACCCTTCAATGAGACAAGGGAAGCCAGGGTTTGGGTATGGATTCGGATATGGGCTACGGTTCAAGTCTCCATTGGGTCACCTTCAGGTTGACTATGCCATAAATGCTTTCAACCAGAAGACTCTTTACTTCGGTGTCACCAATCTTGCTTCATCAACATAG

Protein Analysis

362

Amino Acids

39.01

Weight (kDa)

9.19

Isoelectric Point (pI)

35.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Omp85 PF01103 53 - 348 2.1e-27 Omp85 superfamily domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44160
fragaria_vesca FvH4_3g26270
malus_domestica MD11G1174200.v1.1
prunus_persica Prupe.6G146000_v2.0.a1
pyrus_communis pycom11g14900
rosa_chinensis RchiOBHm_Chr5g0048701
rosa_laevigata RLG00000034550
rosa_multiflora Rmu_sc0006432.1_g000004
rosa_roxburghii Rroxscaffold_1G00033100
rosa_rugosa Rorug05G0240700
rosa_samantha Rh5AG320500 Rh5BG330200 Rh5CG356200 Rh5DG341400
rosa_wichuraiana Rw5G030170 Rw5G030260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 314, 739
AccB7I CCANNNNNTGG 1 cut(s) 959
AccI GTMKAC 1 cut(s) 324
AccII CGCG 3 cut(s) 471, 473, 783
AciI CCGC 2 cut(s) 783, 913
AclWI GGATC 2 cut(s) 801, 814
AcsI RAATTY 2 cut(s) 157, 656
AcuI CTGAAG 1 cut(s) 995
AcyI GRCGYC 1 cut(s) 256
AfaI GTAC 2 cut(s) 76, 222
AfiI CCNNNNNNNGG 4 cut(s) 302, 303, 765, 959
AgsI TTSAA 8 cut(s) 408, 646, 655, 723, 856, 936, 991, 1039
AjnI CCWGG 1 cut(s) 952
AleI CACNNNNGTG 1 cut(s) 265
AluBI AGCT 4 cut(s) 8, 70, 181, 708
AluI AGCT 4 cut(s) 8, 70, 181, 708
Alw21I GWGCWC 1 cut(s) 10
Alw26I GTCTC 4 cut(s) 232, 726, 934, 999
AlwI GGATC 2 cut(s) 801, 814
AlwNI CAGNNNCTG 1 cut(s) 141
Ama87I CYCGRG 1 cut(s) 296
ApeKI GCWGC 2 cut(s) 135, 417
ApoI RAATTY 2 cut(s) 157, 656
Asp700I GAANNNNTTC 1 cut(s) 931
AspA2I CCTAGG 1 cut(s) 901
AspLEI GCGC 1 cut(s) 473
AspS9I GGNCC 3 cut(s) 307, 686, 873
AsuC2I CCSGG 2 cut(s) 556, 924
AsuHPI GGTGA 4 cut(s) 285, 803, 998, 1057
AvaI CYCGRG 1 cut(s) 296
AvaII GGWCC 3 cut(s) 307, 686, 873
AvrII CCTAGG 1 cut(s) 901
BamHI GGATCC 1 cut(s) 806
BanI GGYRCC 2 cut(s) 314, 739
BanII GRGCYC 1 cut(s) 10
BarI GAAGNNNNNNTAC 2 cut(s) 1037, 1069
BbsI GAAGAC 1 cut(s) 1052
Bbv12I GWGCWC 1 cut(s) 10
BbvI GCAGC 2 cut(s) 147, 429
BccI CCATC 2 cut(s) 458, 884
BceAI ACGGC 1 cut(s) 328
BcgI CGANNNNNNTGC 2 cut(s) 304, 338
BciT130I CCWGG 1 cut(s) 954
BciVI GTATCC 1 cut(s) 29
BcnI CCSGG 2 cut(s) 556, 924
BcoDI GTCTC 4 cut(s) 232, 726, 934, 999
BfaI CTAG 5 cut(s) 108, 125, 243, 770, 902
BfuI GTATCC 1 cut(s) 29
BglII AGATCT 1 cut(s) 484
BisI GCNGC 3 cut(s) 136, 418, 913
BlnI CCTAGG 1 cut(s) 901
BlsI GCNGC 3 cut(s) 137, 419, 914
Bme1390I CCNGG 3 cut(s) 556, 924, 954
Bme18I GGWCC 3 cut(s) 307, 686, 873
BmeT110I CYCGRG 1 cut(s) 296
BmgT120I GGNCC 3 cut(s) 307, 686, 873
BmiI GGNNCC 5 cut(s) 308, 316, 741, 808, 874
BmrFI CCNGG 3 cut(s) 556, 924, 954
BmrI ACTGGG 1 cut(s) 314
BmsI GCATC 1 cut(s) 674
BmuI ACTGGG 1 cut(s) 314
BoxI GACNNNNGTC 1 cut(s) 579
BpiI GAAGAC 1 cut(s) 1052
BpuEI CTTGAG 2 cut(s) 409, 892
BpuMI CCSGG 2 cut(s) 556, 924
BsaHI GRCGYC 1 cut(s) 256
BsaI GGTCTC 1 cut(s) 232
BsaJI CCNNGG 5 cut(s) 310, 577, 901, 922, 953
BsaWI WCCGGW 2 cut(s) 619, 809
Bsc4I CCNNNNNNNGG 4 cut(s) 302, 303, 765, 959
Bse118I RCCGGY 1 cut(s) 688
Bse1I ACTGG 1 cut(s) 320
BseBI CCWGG 1 cut(s) 954
BseDI CCNNGG 5 cut(s) 310, 577, 901, 922, 953
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 4 cut(s) 302, 303, 765, 959
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 320
BseXI GCAGC 2 cut(s) 147, 429
Bsh1236I CGCG 3 cut(s) 471, 473, 783
Bsh1285I CGRYCG 1 cut(s) 814
BshNI GGYRCC 2 cut(s) 314, 739
BsiEI CGRYCG 1 cut(s) 814
BsiHKAI GWGCWC 1 cut(s) 10
BsiHKCI CYCGRG 1 cut(s) 296
BsiSI CCGG 5 cut(s) 556, 620, 689, 810, 924
BslFI GGGAC 3 cut(s) 116, 886, 905
BslI CCNNNNNNNGG 4 cut(s) 302, 303, 765, 959
BsmAI GTCTC 4 cut(s) 232, 726, 934, 999
BsmFI GGGAC 3 cut(s) 116, 886, 905
BsmI GAATGC 1 cut(s) 283
Bso31I GGTCTC 1 cut(s) 232
BsoBI CYCGRG 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 10
Bsp143I GATC 2 cut(s) 484, 806
BspACI CCGC 2 cut(s) 783, 913
BspCNI CTCAG 1 cut(s) 22
BspFNI CGCG 3 cut(s) 471, 473, 783
BspLI GGNNCC 5 cut(s) 308, 316, 741, 808, 874
BspPI GGATC 2 cut(s) 801, 814
BspT107I GGYRCC 2 cut(s) 314, 739
BspTNI GGTCTC 1 cut(s) 232
BsrFI RCCGGY 1 cut(s) 688
BsrI ACTGG 1 cut(s) 320
BssAI RCCGGY 1 cut(s) 688
BssECI CCNNGG 5 cut(s) 310, 577, 901, 922, 953
BssMI GATC 2 cut(s) 484, 806
BssNI GRCGYC 1 cut(s) 256
BssT1I CCWWGG 2 cut(s) 577, 901
Bst2UI CCWGG 1 cut(s) 954
Bst4CI ACNGT 4 cut(s) 267, 530, 650, 987
Bst6I CTCTTC 1 cut(s) 8
BstACI GRCGYC 1 cut(s) 256
BstC8I GCNNGC 3 cut(s) 399, 599, 706
BstDEI CTNAG 2 cut(s) 9, 700
BstDSI CCRYGG 1 cut(s) 310
BstEII GGTNACC 1 cut(s) 1004
BstF5I GGATG 1 cut(s) 151
BstFNI CGCG 3 cut(s) 471, 473, 783
BstHHI GCGC 1 cut(s) 473
BstKTI GATC 2 cut(s) 487, 809
BstMAI GTCTC 4 cut(s) 232, 726, 934, 999
BstMBI GATC 2 cut(s) 484, 806
BstMCI CGRYCG 1 cut(s) 814
BstMWI GCNNNNNNNGC 5 cut(s) 32, 426, 780, 912, 1031
BstNI CCWGG 1 cut(s) 954
BstNSI RCATGY 3 cut(s) 446, 510, 601
BstPAI GACNNNNGTC 1 cut(s) 579
BstPI GGTNACC 1 cut(s) 1004
BstSCI CCNGG 3 cut(s) 554, 922, 952
BstUI CGCG 3 cut(s) 471, 473, 783
BstV1I GCAGC 2 cut(s) 147, 429
BstV2I GAAGAC 1 cut(s) 1052
BstX2I RGATCY 2 cut(s) 484, 806
BstXI CCANNNNNNTGG 2 cut(s) 487, 883
BstYI RGATCY 2 cut(s) 484, 806
BsuI GTATCC 1 cut(s) 29
BtgI CCRYGG 1 cut(s) 310
BtsCI GGATG 1 cut(s) 151
BtsI GCAGTG 2 cut(s) 517, 781
BtsIMutI CAGTG 3 cut(s) 272, 517, 781
Cac8I GCNNGC 3 cut(s) 399, 599, 706
CaiI CAGNNNCTG 1 cut(s) 141
CfoI GCGC 1 cut(s) 473
Cfr10I RCCGGY 1 cut(s) 688
Cfr13I GGNCC 3 cut(s) 307, 686, 873
CseI GACGC 3 cut(s) 245, 437, 477
Csp6I GTAC 2 cut(s) 75, 221
CviAII CATG 7 cut(s) 192, 443, 507, 524, 598, 736, 819
CviQI GTAC 2 cut(s) 75, 221
DdeI CTNAG 2 cut(s) 9, 700
DpnI GATC 2 cut(s) 486, 808
DpnII GATC 2 cut(s) 484, 806
DraI TTTAAA 1 cut(s) 543
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
Ecl136II GAGCTC 1 cut(s) 8
Eco130I CCWWGG 2 cut(s) 577, 901
Eco24I GRGCYC 1 cut(s) 10
Eco31I GGTCTC 1 cut(s) 232
Eco47I GGWCC 3 cut(s) 307, 686, 873
Eco53kI GAGCTC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 995
Eco88I CYCGRG 1 cut(s) 296
Eco91I GGTNACC 1 cut(s) 1004
EcoICRI GAGCTC 1 cut(s) 8
EcoO65I GGTNACC 1 cut(s) 1004
EcoRII CCWGG 1 cut(s) 952
EcoT14I CCWWGG 2 cut(s) 577, 901
EcoT38I GRGCYC 1 cut(s) 10
ErhI CCWWGG 2 cut(s) 577, 901
FaeI CATG 7 cut(s) 195, 446, 510, 527, 601, 739, 822
FaqI GGGAC 3 cut(s) 116, 886, 905
FatI CATG 7 cut(s) 191, 442, 506, 523, 597, 735, 818
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 3 cut(s) 136, 418, 913
FokI GGATG 1 cut(s) 138
FriOI GRGCYC 1 cut(s) 10
Fsp4HI GCNGC 3 cut(s) 136, 418, 913
FspBI CTAG 5 cut(s) 108, 125, 243, 770, 902
GlaI GCGC 1 cut(s) 472
GluI GCNGC 3 cut(s) 136, 418, 913
HapII CCGG 5 cut(s) 556, 620, 689, 810, 924
HgaI GACGC 3 cut(s) 245, 437, 477
HhaI GCGC 1 cut(s) 473
Hin1I GRCGYC 1 cut(s) 256
Hin1II CATG 7 cut(s) 195, 446, 510, 527, 601, 739, 822
Hin6I GCGC 1 cut(s) 471
HinP1I GCGC 1 cut(s) 471
HincII GTYRAC 2 cut(s) 325, 1018
HindII GTYRAC 2 cut(s) 325, 1018
HindIII AAGCTT 3 cut(s) 68, 179, 706
HinfI GANTC 4 cut(s) 212, 551, 969, 1048
HpaII CCGG 5 cut(s) 556, 620, 689, 810, 924
HphI GGTGA 4 cut(s) 285, 803, 998, 1057
Hpy166II GTNNAC 5 cut(s) 55, 260, 310, 325, 1018
Hpy188I TCNGA 3 cut(s) 12, 453, 974
Hpy188III TCNNGA 2 cut(s) 342, 488
Hpy8I GTNNAC 5 cut(s) 55, 260, 310, 325, 1018
HpyAV CCTTC 3 cut(s) 863, 942, 1019
HpyCH4III ACNGT 4 cut(s) 267, 530, 650, 987
HpyCH4V TGCA 4 cut(s) 510, 563, 601, 665
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 426, 780, 912, 1031
HpyF3I CTNAG 2 cut(s) 9, 700
Hsp92I GRCGYC 1 cut(s) 256
Hsp92II CATG 7 cut(s) 195, 446, 510, 527, 601, 739, 822
HspAI GCGC 1 cut(s) 471
Kzo9I GATC 2 cut(s) 484, 806
LmnI GCTCC 2 cut(s) 5, 414
Lsp1109I GCAGC 2 cut(s) 147, 429
LweI GCATC 1 cut(s) 674
MaeI CTAG 5 cut(s) 108, 125, 243, 770, 902
MaeIII GTNAC 3 cut(s) 846, 1004, 1063
MalI GATC 2 cut(s) 486, 808
MboI GATC 2 cut(s) 484, 806
MboII GAAGA 5 cut(s) 25, 265, 634, 871, 1057
MfeI CAATTG 1 cut(s) 723
MflI RGATCY 2 cut(s) 484, 806
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 5 cut(s) 157, 368, 656, 723, 839
MlyI GAGTC 1 cut(s) 1042
MmeI TCCRAC 1 cut(s) 784
MnlI CCTC 5 cut(s) 126, 149, 161, 344, 787
MroXI GAANNNNTTC 1 cut(s) 931
MseI TTAA 4 cut(s) 48, 83, 456, 542
MslI CAYNNNNRTG 1 cut(s) 265
MspI CCGG 5 cut(s) 556, 620, 689, 810, 924
MspR9I CCNGG 3 cut(s) 556, 924, 954
MunI CAATTG 1 cut(s) 723
Mva1269I GAATGC 1 cut(s) 283
MvaI CCWGG 1 cut(s) 954
MvnI CGCG 3 cut(s) 471, 473, 783
MwoI GCNNNNNNNGC 5 cut(s) 32, 426, 780, 912, 1031
NciI CCSGG 2 cut(s) 556, 924
NdeII GATC 2 cut(s) 484, 806
NlaIII CATG 7 cut(s) 195, 446, 510, 527, 601, 739, 822
NlaIV GGNNCC 5 cut(s) 308, 316, 741, 808, 874
NmuCI GTSAC 2 cut(s) 1004, 1063
NspI RCATGY 3 cut(s) 446, 510, 601
OliI CACNNNNGTG 1 cut(s) 265
PaeI GCATGC 1 cut(s) 601
PctI GAATGC 1 cut(s) 283
PdmI GAANNNNTTC 1 cut(s) 931
PfeI GAWTC 3 cut(s) 212, 551, 969
PflMI CCANNNNNTGG 1 cut(s) 959
PkrI GCNGC 3 cut(s) 137, 419, 914
PleI GAGTC 1 cut(s) 1042
PpsI GAGTC 1 cut(s) 1042
PshAI GACNNNNGTC 1 cut(s) 579
Psp124BI GAGCTC 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 952
PspEI GGTNACC 1 cut(s) 1004
PspGI CCWGG 1 cut(s) 952
PspN4I GGNNCC 5 cut(s) 308, 316, 741, 808, 874
PspPI GGNCC 3 cut(s) 307, 686, 873
PstNI CAGNNNCTG 1 cut(s) 141
PsuI RGATCY 2 cut(s) 484, 806
RsaI GTAC 2 cut(s) 76, 222
RsaNI GTAC 2 cut(s) 75, 221
RseI CAYNNNNRTG 1 cut(s) 265
SacI GAGCTC 1 cut(s) 10
SalI GTCGAC 1 cut(s) 323
SaqAI TTAA 4 cut(s) 48, 83, 456, 542
SatI GCNGC 3 cut(s) 136, 418, 913
Sau3AI GATC 2 cut(s) 484, 806
Sau96I GGNCC 3 cut(s) 307, 686, 873
SchI GAGTC 1 cut(s) 1042
ScrFI CCNGG 3 cut(s) 556, 924, 954
SduI GDGCHC 1 cut(s) 10
SfaNI GCATC 1 cut(s) 674
SinI GGWCC 3 cut(s) 307, 686, 873
SmiMI CAYNNNNRTG 1 cut(s) 265
SmlI CTYRAG 2 cut(s) 388, 907
SmoI CTYRAG 2 cut(s) 388, 907
SphI GCATGC 1 cut(s) 601
Sse9I AATT 5 cut(s) 157, 368, 656, 723, 839
SsiI CCGC 2 cut(s) 783, 913
SspMI CTAG 5 cut(s) 108, 125, 243, 770, 902
SstI GAGCTC 1 cut(s) 10
StyD4I CCNGG 3 cut(s) 554, 922, 952
StyI CCWWGG 2 cut(s) 577, 901
TaaI ACNGT 4 cut(s) 267, 530, 650, 987
TaqI TCGA 1 cut(s) 324
TaqII GACCGA 2 cut(s) 327, 804
TasI AATT 5 cut(s) 157, 368, 656, 723, 839
TatI WGTACW 2 cut(s) 74, 220
TauI GCSGC 1 cut(s) 915
TfiI GAWTC 3 cut(s) 212, 551, 969
Tru1I TTAA 4 cut(s) 48, 83, 456, 542
Tru9I TTAA 4 cut(s) 48, 83, 456, 542
TscAI CASTG 3 cut(s) 272, 517, 781
TseFI GTSAC 2 cut(s) 1004, 1063
TseI GCWGC 2 cut(s) 135, 417
Tsp45I GTSAC 2 cut(s) 1004, 1063
TspDTI ATGAA 2 cut(s) 265, 1068
TspGWI ACGGA 1 cut(s) 507
TspRI CASTG 3 cut(s) 272, 517, 781
Van91I CCANNNNNTGG 1 cut(s) 959
VpaK11BI GGWCC 3 cut(s) 307, 686, 873
XapI RAATTY 2 cut(s) 157, 656
XceI RCATGY 3 cut(s) 446, 510, 601
XcmI CCANNNNNNNNNTGG 2 cut(s) 223, 838
XmaJI CCTAGG 1 cut(s) 901
XmiI GTMKAC 1 cut(s) 324
XmnI GAANNNNTTC 1 cut(s) 931
XspI CTAG 5 cut(s) 108, 125, 243, 770, 902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.