Rh5CG356200

Outer envelope protein 80

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0015354
Physical Location & Seq
Forward (+)
41834349 .. 41839670
5322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG356200.1

Sequence Viewer

Length: 714 bp
ATGGGAGCTCAGAAGAGCATCCATGCTGGCAAAGCCAAGATTGATGTTAATGTTGATTTCACTCACAAGCTTTGTGCCTCTTTGATGCTTCCTCCTTTGAGTAATGGCAGTGGCAGTCCTCTCTCTCTCATCATCGGGAGTCTTTGCATCAAACATCCAAACTTGTTTGGTGGAAGTGAGAAGCTTGATGTGTCATTGGATAAGGGCCTGTATGATTCGAATGTCTTATTGGCTTATAGAAGGCCAAGACCTCAATGGCTAGCTCAACAGTCTTTTGTACTACAGCATTCTATTTCACCCGAGATAGGGGTCCATGGCATTCCCATGGACAATTTCTCCCGGTCAGCTAGTGGAGGTGTAAATTTGTCTCGATTATCAGTCGGCATGGATCTCAATGAGCCTGCAAGTTCCAAGTGGAGTAGCACAACTAGCCTAAAGTTTGAGCATGTCCGGCCAATGGATGATAATGGCCGCTCAATGAGCCGAGATCTTGATGGGTTTCCTGTCACATGCAGTGGAAGTCCTCATGATAGTATGGTAGTTCTAAAGCAAGAATCTCGGTATGCAAAGGCAAATGATCGCAGTTTTTTTCAGTTCAGTCTGCAAATAGAACAAGGGATACCAGTTCTATCAAAGTGGCTAATATTTAACAAGTTTAAATTCATTGCATCAAAGGGAGTCAAACTTGGGCCAGCATTCCTCTTGACAAGGTGA

Protein Analysis

237

Amino Acids

25.98

Weight (kDa)

9.51

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Omp85 PF01103 54 - 230 5.7e-06 Omp85 superfamily domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44160
fragaria_vesca FvH4_3g26270
malus_domestica MD11G1174200.v1.1
prunus_persica Prupe.6G146000_v2.0.a1
pyrus_communis pycom11g14900
rosa_chinensis RchiOBHm_Chr5g0048701
rosa_laevigata RLG00000034550
rosa_multiflora Rmu_sc0006432.1_g000004
rosa_roxburghii Rroxscaffold_1G00033100
rosa_rugosa Rorug05G0240700
rosa_samantha Rh5AG320500 Rh5BG330200 Rh5CG356200 Rh5DG341400
rosa_wichuraiana Rw5G030170 Rw5G030260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 474
AciI CCGC 1 cut(s) 472
AclWI GGATC 1 cut(s) 396
AcoI YGGCCR 2 cut(s) 452, 469
AcsI RAATTY 2 cut(s) 361, 659
AfaI GTAC 1 cut(s) 279
AfiI CCNNNNNNNGG 3 cut(s) 305, 306, 457
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AluBI AGCT 5 cut(s) 8, 70, 184, 263, 347
AluI AGCT 5 cut(s) 8, 70, 184, 263, 347
Alw21I GWGCWC 1 cut(s) 10
Alw26I GTCTC 1 cut(s) 372
AlwI GGATC 1 cut(s) 396
Ama87I CYCGRG 1 cut(s) 299
AoxI GGCC 5 cut(s) 205, 242, 452, 469, 689
ApoI RAATTY 2 cut(s) 361, 659
AspS9I GGNCC 3 cut(s) 205, 310, 689
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 1 cut(s) 288
AsuII TTCGAA 1 cut(s) 218
AsuNHI GCTAGC 1 cut(s) 259
AvaI CYCGRG 1 cut(s) 299
AvaII GGWCC 1 cut(s) 310
BanII GRGCYC 1 cut(s) 10
Bbv12I GWGCWC 1 cut(s) 10
BccI CCATC 1 cut(s) 488
BcgI CGANNNNNNTGC 2 cut(s) 539, 573
BciVI GTATCC 1 cut(s) 612
BcnI CCSGG 1 cut(s) 340
BcoDI GTCTC 1 cut(s) 372
BfaI CTAG 3 cut(s) 260, 348, 429
BfmI CTRYAG 1 cut(s) 281
BfuI GTATCC 1 cut(s) 612
BglII AGATCT 1 cut(s) 487
BisI GCNGC 1 cut(s) 472
BlsI GCNGC 1 cut(s) 473
Bme1390I CCNGG 1 cut(s) 340
Bme18I GGWCC 1 cut(s) 310
BmeT110I CYCGRG 1 cut(s) 299
BmgT120I GGNCC 3 cut(s) 205, 310, 689
BmiI GGNNCC 1 cut(s) 311
BmrFI CCNGG 1 cut(s) 340
BmsI GCATC 4 cut(s) 27, 75, 156, 677
BmtI GCTAGC 1 cut(s) 263
Bpu14I TTCGAA 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 340
BsaJI CCNNGG 2 cut(s) 313, 324
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
Bsc4I CCNNNNNNNGG 3 cut(s) 305, 306, 457
Bse1I ACTGG 1 cut(s) 623
Bse3DI GCAATG 1 cut(s) 663
BseDI CCNNGG 2 cut(s) 313, 324
BseGI GGATG 3 cut(s) 18, 154, 466
BseLI CCNNNNNNNGG 3 cut(s) 305, 306, 457
BseMI GCAATG 1 cut(s) 663
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 623
BshFI GGCC 5 cut(s) 207, 244, 454, 471, 691
BsiHKAI GWGCWC 1 cut(s) 10
BsiHKCI CYCGRG 1 cut(s) 299
BsiSI CCGG 2 cut(s) 340, 451
BslI CCNNNNNNNGG 3 cut(s) 305, 306, 457
BsmAI GTCTC 1 cut(s) 372
BsmI GAATGC 3 cut(s) 286, 318, 695
BsnI GGCC 5 cut(s) 207, 244, 454, 471, 691
BsoBI CYCGRG 1 cut(s) 299
Bsp119I TTCGAA 1 cut(s) 218
Bsp1286I GDGCHC 1 cut(s) 10
Bsp143I GATC 3 cut(s) 388, 487, 577
Bsp19I CCATGG 2 cut(s) 313, 324
BspACI CCGC 1 cut(s) 472
BspANI GGCC 5 cut(s) 207, 244, 454, 471, 691
BspCNI CTCAG 1 cut(s) 22
BspHI TCATGA 1 cut(s) 526
BspLI GGNNCC 1 cut(s) 311
BspOI GCTAGC 1 cut(s) 263
BspPI GGATC 1 cut(s) 396
BspQI GCTCTTC 1 cut(s) 8
BspT104I TTCGAA 1 cut(s) 218
BsrBI CCGCTC 1 cut(s) 474
BsrDI GCAATG 1 cut(s) 663
BsrI ACTGG 1 cut(s) 623
BssECI CCNNGG 2 cut(s) 313, 324
BssMI GATC 3 cut(s) 388, 487, 577
BssT1I CCWWGG 2 cut(s) 313, 324
Bst4CI ACNGT 1 cut(s) 270
Bst6I CTCTTC 1 cut(s) 8
BstBI TTCGAA 1 cut(s) 218
BstC8I GCNNGC 4 cut(s) 28, 261, 402, 693
BstDEI CTNAG 1 cut(s) 9
BstDSI CCRYGG 2 cut(s) 313, 324
BstF5I GGATG 3 cut(s) 18, 154, 466
BstKTI GATC 3 cut(s) 391, 490, 580
BstMAI GTCTC 1 cut(s) 372
BstMBI GATC 3 cut(s) 388, 487, 577
BstMWI GCNNNNNNNGC 4 cut(s) 32, 429, 451, 480
BstNSI RCATGY 2 cut(s) 449, 513
BstSCI CCNGG 1 cut(s) 338
BstSFI CTRYAG 1 cut(s) 281
BstX2I RGATCY 2 cut(s) 388, 487
BstYI RGATCY 2 cut(s) 388, 487
BsuI GTATCC 1 cut(s) 612
BsuRI GGCC 5 cut(s) 207, 244, 454, 471, 691
BtgI CCRYGG 2 cut(s) 313, 324
BtsCI GGATG 3 cut(s) 18, 154, 466
BtsI GCAGTG 2 cut(s) 115, 520
BtsIMutI CAGTG 2 cut(s) 115, 520
Cac8I GCNNGC 4 cut(s) 28, 261, 402, 693
CciI TCATGA 1 cut(s) 526
Cfr13I GGNCC 3 cut(s) 205, 310, 689
Csp6I GTAC 1 cut(s) 278
CviAII CATG 7 cut(s) 23, 314, 325, 385, 446, 510, 527
CviQI GTAC 1 cut(s) 278
DdeI CTNAG 1 cut(s) 9
DpnI GATC 3 cut(s) 390, 489, 579
DpnII GATC 3 cut(s) 388, 487, 577
DraI TTTAAA 1 cut(s) 658
EaeI YGGCCR 2 cut(s) 452, 469
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
Ecl136II GAGCTC 1 cut(s) 8
Eco130I CCWWGG 2 cut(s) 313, 324
Eco24I GRGCYC 1 cut(s) 10
Eco47I GGWCC 1 cut(s) 310
Eco53kI GAGCTC 1 cut(s) 8
Eco88I CYCGRG 1 cut(s) 299
EcoICRI GAGCTC 1 cut(s) 8
EcoO109I RGGNCCY 1 cut(s) 205
EcoT14I CCWWGG 2 cut(s) 313, 324
EcoT38I GRGCYC 1 cut(s) 10
ErhI CCWWGG 2 cut(s) 313, 324
FaeI CATG 7 cut(s) 26, 317, 328, 388, 449, 513, 530
FatI CATG 7 cut(s) 22, 313, 324, 384, 445, 509, 526
Fnu4HI GCNGC 1 cut(s) 472
FokI GGATG 3 cut(s) 5, 141, 473
FriOI GRGCYC 1 cut(s) 10
Fsp4HI GCNGC 1 cut(s) 472
FspBI CTAG 3 cut(s) 260, 348, 429
GluI GCNGC 1 cut(s) 472
HaeIII GGCC 5 cut(s) 207, 244, 454, 471, 691
HapII CCGG 2 cut(s) 340, 451
Hin1II CATG 7 cut(s) 26, 317, 328, 388, 449, 513, 530
HindIII AAGCTT 2 cut(s) 68, 182
HinfI GANTC 4 cut(s) 139, 215, 554, 678
HpaII CCGG 2 cut(s) 340, 451
HphI GGTGA 1 cut(s) 288
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 5 cut(s) 136, 369, 491, 527, 703
HpyAV CCTTC 1 cut(s) 234
HpyCH4III ACNGT 1 cut(s) 270
HpyCH4V TGCA 6 cut(s) 147, 404, 513, 566, 604, 668
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 429, 451, 480
HpyF3I CTNAG 1 cut(s) 9
Hsp92II CATG 7 cut(s) 26, 317, 328, 388, 449, 513, 530
Kzo9I GATC 3 cut(s) 388, 487, 577
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 8 cut(s) 12, 221, 353, 414, 464, 516, 636, 705
LweI GCATC 4 cut(s) 27, 75, 156, 677
MaeI CTAG 3 cut(s) 260, 348, 429
MaeIII GTNAC 1 cut(s) 505
MalI GATC 3 cut(s) 390, 489, 579
MbiI CCGCTC 1 cut(s) 474
MboI GATC 3 cut(s) 388, 487, 577
MboII GAAGA 1 cut(s) 25
MflI RGATCY 2 cut(s) 388, 487
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 3 cut(s) 331, 361, 659
MlyI GAGTC 2 cut(s) 148, 687
MnlI CCTC 7 cut(s) 88, 102, 129, 261, 347, 534, 710
MseI TTAA 3 cut(s) 48, 648, 657
MslI CAYNNNNRTG 1 cut(s) 323
MspI CCGG 2 cut(s) 340, 451
MspR9I CCNGG 1 cut(s) 340
Mva1269I GAATGC 3 cut(s) 286, 318, 695
MwoI GCNNNNNNNGC 4 cut(s) 32, 429, 451, 480
NciI CCSGG 1 cut(s) 340
NcoI CCATGG 2 cut(s) 313, 324
NdeII GATC 3 cut(s) 388, 487, 577
NheI GCTAGC 1 cut(s) 259
NlaIII CATG 7 cut(s) 26, 317, 328, 388, 449, 513, 530
NlaIV GGNNCC 1 cut(s) 311
NmeAIII GCCGAG 1 cut(s) 509
NmuCI GTSAC 1 cut(s) 505
NspI RCATGY 2 cut(s) 449, 513
NspV TTCGAA 1 cut(s) 218
PagI TCATGA 1 cut(s) 526
PciSI GCTCTTC 1 cut(s) 8
PctI GAATGC 3 cut(s) 286, 318, 695
PfeI GAWTC 2 cut(s) 215, 554
PkrI GCNGC 1 cut(s) 473
PleI GAGTC 2 cut(s) 147, 686
PpsI GAGTC 2 cut(s) 147, 686
Psp124BI GAGCTC 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 311
PspPI GGNCC 3 cut(s) 205, 310, 689
PsrI GAACNNNNNNTAC 2 cut(s) 603, 635
PsuI RGATCY 2 cut(s) 388, 487
RsaI GTAC 1 cut(s) 279
RsaNI GTAC 1 cut(s) 278
RseI CAYNNNNRTG 1 cut(s) 323
SacI GAGCTC 1 cut(s) 10
SapI GCTCTTC 1 cut(s) 8
SaqAI TTAA 3 cut(s) 48, 648, 657
SatI GCNGC 1 cut(s) 472
Sau3AI GATC 3 cut(s) 388, 487, 577
Sau96I GGNCC 3 cut(s) 205, 310, 689
SchI GAGTC 2 cut(s) 148, 687
ScrFI CCNGG 1 cut(s) 340
SduI GDGCHC 1 cut(s) 10
SetI ASST 8 cut(s) 10, 72, 186, 253, 265, 349, 358, 713
SfaNI GCATC 4 cut(s) 27, 75, 156, 677
SfcI CTRYAG 1 cut(s) 281
SfuI TTCGAA 1 cut(s) 218
SinI GGWCC 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 323
Sse9I AATT 3 cut(s) 331, 361, 659
SsiI CCGC 1 cut(s) 472
SspI AATATT 1 cut(s) 645
SspMI CTAG 3 cut(s) 260, 348, 429
SstI GAGCTC 1 cut(s) 10
StyD4I CCNGG 1 cut(s) 338
StyI CCWWGG 2 cut(s) 313, 324
TaaI ACNGT 1 cut(s) 270
TaqI TCGA 2 cut(s) 218, 370
TasI AATT 3 cut(s) 331, 361, 659
TatI WGTACW 1 cut(s) 277
TauI GCSGC 1 cut(s) 474
TfiI GAWTC 2 cut(s) 215, 554
Tru1I TTAA 3 cut(s) 48, 648, 657
Tru9I TTAA 3 cut(s) 48, 648, 657
TscAI CASTG 2 cut(s) 115, 520
TseFI GTSAC 1 cut(s) 505
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 1 cut(s) 652
TspRI CASTG 2 cut(s) 115, 520
VpaK11BI GGWCC 1 cut(s) 310
XapI RAATTY 2 cut(s) 361, 659
XceI RCATGY 2 cut(s) 449, 513
XcmI CCANNNNNNNNNTGG 1 cut(s) 252
XspI CTAG 3 cut(s) 260, 348, 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.