MD11G1174200.v1.1

Outer envelope protein 80

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0015354
Physical Location & Seq
Forward (+)
20424871 .. 20430361
5491 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1174200.v1.1.491

Sequence Viewer

Length: 1086 bp
ATGGGAGCTCAGAAGAGCATTCATGCTGGCAAAGCCAAGATTGATGTCAATGTTGATTTCACTCACAAGCTTTGTGCTTCGTTGATGCTTCCTCCTTTGAGTAATGGTAGTGGCAGTCCTCTGTCTCTGATAATTGGAAGTCTTTGCATCAAACATCCAAATTTATTTGGGGGGAGTGAGAAGCTTGATGTGTCATGGGATAAGGGGCTGTATGATTCTAATGTTTTGCTGGCTTATAGAAGACCGAGACCCGAATGGCTAGCTCAACAGTCCTTTGTAATACAGCATTCTATTTCACCCGAGATAGGGGTTCACGGCATTCCCATGGACAATTTCTCACGTTCAGGTAGTGGAGGTGTGAATTTATCTCGATTATCGGTAGGCATGGATCTGAATGAACCTTCAAGTTCCAAATGGAGTAGCACAACTAGCATAAAGTTCGAGCATGTCCGGCCAGTGAATGATAATGGGCGCCCTATCAGCCTAGATCTTGATGGGTTTCCTGTCACCTGCAGTGGAAGTCCCCATGATAGTATGGTAGTTCTAAAGCAAGAATCTCGTTACGCAAAGGCAAATGATCATAGTTTTTTTCATTTCAGTCTGCAGATAGAACAAGGGATACCAGTTCTATCTAAATGGCTAATCTTCAACAAGTTTAAATTTGTTGCATCCAAGGGAGTCAAACTTGGGCCGGCATTTCTCTTGACGAGAATGACTGGTGGTTCCACTGTAGGGGACATGGCACCTTACCAAGCATTTGCAATTGGAGGTCTTGGCAGTGTTCGAGGGTACGGTGAAGGAGCGGTGGGATCTGGGAGATCGTGCCTGGTTGCTAATAGCGAGTTGACATTACCTTTTAACAAGATGGTGGAAGGTGCTGTTTTCTTGGACTGTGGAACTGATTTGGGGTCTTCTCATCATGTACCTGGAAACCCAGCCCTGAGGCTTGGCAAACCAGGATCCGGAGTTGGGCTCGGATATGGCCTTCGTTTCAAATCACAGTTTGGCCATTTTGTAGTTGATTACGCTATTAATGCCTTTCAACAGAAAACAGTCTATTTTGGCATCAGCAACCTCGCTTCATGA

Protein Analysis

362

Amino Acids

38.66

Weight (kDa)

9.11

Isoelectric Point (pI)

37.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Omp85 PF01103 54 - 357 2.3e-30 Omp85 superfamily domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44160
fragaria_vesca FvH4_3g26270
malus_domestica MD11G1174200.v1.1
prunus_persica Prupe.6G146000_v2.0.a1
pyrus_communis pycom11g14900
rosa_chinensis RchiOBHm_Chr5g0048701
rosa_laevigata RLG00000034550
rosa_multiflora Rmu_sc0006432.1_g000004
rosa_roxburghii Rroxscaffold_1G00033100
rosa_rugosa Rorug05G0240700
rosa_samantha Rh5AG320500 Rh5BG330200 Rh5CG356200 Rh5DG341400
rosa_wichuraiana Rw5G030170 Rw5G030260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 518
Acc36I ACCTGC 1 cut(s) 518
AccB1I GGYRCC 2 cut(s) 471, 742
AccBSI CCGCTC 1 cut(s) 803
AccIII TCCGGA 1 cut(s) 962
AciI CCGC 1 cut(s) 803
AclWI GGATC 4 cut(s) 396, 817, 954, 967
AcoI YGGCCR 2 cut(s) 452, 1006
AcsI RAATTY 3 cut(s) 160, 361, 659
AcyI GRCGYC 1 cut(s) 472
AfaI GTAC 2 cut(s) 791, 924
AfiI CCNNNNNNNGG 5 cut(s) 305, 306, 732, 962, 969
AgsI TTSAA 4 cut(s) 405, 649, 994, 1043
AjnI CCWGG 3 cut(s) 825, 925, 955
AluBI AGCT 4 cut(s) 8, 70, 184, 263
AluI AGCT 4 cut(s) 8, 70, 184, 263
Alw21I GWGCWC 1 cut(s) 10
Alw26I GTCTC 2 cut(s) 129, 241
AlwI GGATC 4 cut(s) 396, 817, 954, 967
Ama87I CYCGRG 1 cut(s) 299
Aor13HI TCCGGA 1 cut(s) 962
AoxI GGCC 4 cut(s) 452, 689, 982, 1006
ApoI RAATTY 3 cut(s) 160, 361, 659
AseI ATTAAT 1 cut(s) 1032
AspLEI GCGC 1 cut(s) 474
AspS9I GGNCC 1 cut(s) 689
AsuHPI GGTGA 3 cut(s) 288, 499, 806
AsuNHI GCTAGC 1 cut(s) 259
AvaI CYCGRG 1 cut(s) 299
AxyI CCTNAGG 1 cut(s) 941
BalI TGGCCA 1 cut(s) 1008
BamHI GGATCC 1 cut(s) 959
BanI GGYRCC 2 cut(s) 471, 742
BanII GRGCYC 2 cut(s) 10, 975
BbsI GAAGAC 2 cut(s) 247, 903
Bbv12I GWGCWC 1 cut(s) 10
BccI CCATC 2 cut(s) 488, 859
BceAI ACGGC 1 cut(s) 331
BcgI CGANNNNNNTGC 4 cut(s) 421, 455, 539, 573
BciT130I CCWGG 3 cut(s) 827, 927, 957
BciVI GTATCC 1 cut(s) 612
BclI TGATCA 1 cut(s) 577
BcoDI GTCTC 2 cut(s) 129, 241
BfaI CTAG 3 cut(s) 260, 429, 485
BfmI CTRYAG 3 cut(s) 511, 602, 729
BfoI RGCGCY 1 cut(s) 475
BfuAI ACCTGC 1 cut(s) 518
BfuI GTATCC 1 cut(s) 612
BglII AGATCT 1 cut(s) 487
Bme1390I CCNGG 3 cut(s) 827, 927, 957
BmeT110I CYCGRG 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 689
BmiI GGNNCC 4 cut(s) 473, 724, 744, 961
BmrFI CCNGG 3 cut(s) 827, 927, 957
BmsI GCATC 4 cut(s) 75, 156, 677, 1074
BmtI GCTAGC 1 cut(s) 263
BpiI GAAGAC 2 cut(s) 247, 903
BplI GAGNNNNNCTC 2 cut(s) 957, 989
BsaHI GRCGYC 1 cut(s) 472
BsaI GGTCTC 1 cut(s) 241
BsaJI CCNNGG 2 cut(s) 324, 672
BsaWI WCCGGW 1 cut(s) 962
Bsc4I CCNNNNNNNGG 5 cut(s) 305, 306, 732, 962, 969
Bse118I RCCGGY 1 cut(s) 691
Bse1I ACTGG 3 cut(s) 455, 623, 721
Bse21I CCTNAGG 1 cut(s) 941
BseAI TCCGGA 1 cut(s) 962
BseBI CCWGG 3 cut(s) 827, 927, 957
BseDI CCNNGG 2 cut(s) 324, 672
BseGI GGATG 2 cut(s) 154, 668
BseLI CCNNNNNNNGG 5 cut(s) 305, 306, 732, 962, 969
BseMII CTCAG 2 cut(s) 23, 932
BseNI ACTGG 3 cut(s) 455, 623, 721
BseYI CCCAGC 1 cut(s) 934
BshFI GGCC 4 cut(s) 454, 691, 984, 1008
BshNI GGYRCC 2 cut(s) 471, 742
BsiHKAI GWGCWC 1 cut(s) 10
BsiHKCI CYCGRG 1 cut(s) 299
BsiSI CCGG 3 cut(s) 451, 692, 963
BslFI GGGAC 2 cut(s) 507, 749
BslI CCNNNNNNNGG 5 cut(s) 305, 306, 732, 962, 969
BsmAI GTCTC 2 cut(s) 129, 241
BsmFI GGGAC 2 cut(s) 507, 749
BsmI GAATGC 3 cut(s) 18, 286, 318
BsnI GGCC 4 cut(s) 454, 691, 984, 1008
Bso31I GGTCTC 1 cut(s) 241
BsoBI CYCGRG 1 cut(s) 299
Bsp1286I GDGCHC 2 cut(s) 10, 975
Bsp13I TCCGGA 1 cut(s) 962
Bsp143I GATC 6 cut(s) 388, 487, 577, 809, 818, 959
Bsp19I CCATGG 1 cut(s) 324
BspACI CCGC 1 cut(s) 803
BspANI GGCC 4 cut(s) 454, 691, 984, 1008
BspCNI CTCAG 2 cut(s) 22, 933
BspEI TCCGGA 1 cut(s) 962
BspHI TCATGA 1 cut(s) 1082
BspLI GGNNCC 4 cut(s) 473, 724, 744, 961
BspMAI CTGCAG 2 cut(s) 515, 606
BspMI ACCTGC 1 cut(s) 518
BspOI GCTAGC 1 cut(s) 263
BspPI GGATC 4 cut(s) 396, 817, 954, 967
BspQI GCTCTTC 1 cut(s) 8
BspT107I GGYRCC 2 cut(s) 471, 742
BspTNI GGTCTC 1 cut(s) 241
BsrBI CCGCTC 1 cut(s) 803
BsrFI RCCGGY 1 cut(s) 691
BsrI ACTGG 3 cut(s) 455, 623, 721
BssAI RCCGGY 1 cut(s) 691
BssECI CCNNGG 2 cut(s) 324, 672
BssMI GATC 6 cut(s) 388, 487, 577, 809, 818, 959
BssNI GRCGYC 1 cut(s) 472
BssT1I CCWWGG 2 cut(s) 324, 672
Bst2UI CCWGG 3 cut(s) 827, 927, 957
Bst4CI ACNGT 6 cut(s) 270, 730, 794, 893, 1002, 1054
Bst6I CTCTTC 1 cut(s) 8
BstACI GRCGYC 1 cut(s) 472
BstC8I GCNNGC 4 cut(s) 28, 231, 261, 693
BstDEI CTNAG 2 cut(s) 9, 941
BstDSI CCRYGG 1 cut(s) 324
BstF5I GGATG 2 cut(s) 154, 668
BstH2I RGCGCY 1 cut(s) 475
BstHHI GCGC 1 cut(s) 474
BstKTI GATC 6 cut(s) 391, 490, 580, 812, 821, 962
BstMAI GTCTC 2 cut(s) 129, 241
BstMBI GATC 6 cut(s) 388, 487, 577, 809, 818, 959
BstMWI GCNNNNNNNGC 5 cut(s) 32, 429, 451, 480, 1034
BstNI CCWGG 3 cut(s) 827, 927, 957
BstNSI RCATGY 1 cut(s) 449
BstSCI CCNGG 3 cut(s) 825, 925, 955
BstSFI CTRYAG 3 cut(s) 511, 602, 729
BstV2I GAAGAC 2 cut(s) 247, 903
BstX2I RGATCY 4 cut(s) 388, 487, 809, 959
BstYI RGATCY 4 cut(s) 388, 487, 809, 959
Bsu36I CCTNAGG 1 cut(s) 941
BsuI GTATCC 1 cut(s) 612
BsuRI GGCC 4 cut(s) 454, 691, 984, 1008
BtgI CCRYGG 1 cut(s) 324
BtsCI GGATG 2 cut(s) 154, 668
BtsI GCAGTG 2 cut(s) 520, 784
BtsIMutI CAGTG 4 cut(s) 462, 520, 726, 784
BveI ACCTGC 1 cut(s) 518
Cac8I GCNNGC 4 cut(s) 28, 231, 261, 693
CciI TCATGA 1 cut(s) 1082
CfoI GCGC 1 cut(s) 474
Cfr10I RCCGGY 1 cut(s) 691
Cfr13I GGNCC 1 cut(s) 689
Csp6I GTAC 2 cut(s) 790, 923
CviAII CATG 9 cut(s) 23, 195, 325, 385, 446, 527, 739, 920, 1083
CviQI GTAC 2 cut(s) 790, 923
DdeI CTNAG 2 cut(s) 9, 941
DinI GGCGCC 1 cut(s) 473
DpnI GATC 6 cut(s) 390, 489, 579, 811, 820, 961
DpnII GATC 6 cut(s) 388, 487, 577, 809, 818, 959
DraI TTTAAA 1 cut(s) 658
EaeI YGGCCR 2 cut(s) 452, 1006
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
Ecl136II GAGCTC 1 cut(s) 8
Eco130I CCWWGG 2 cut(s) 324, 672
Eco24I GRGCYC 2 cut(s) 10, 975
Eco31I GGTCTC 1 cut(s) 241
Eco53kI GAGCTC 1 cut(s) 8
Eco81I CCTNAGG 1 cut(s) 941
Eco88I CYCGRG 1 cut(s) 299
EcoICRI GAGCTC 1 cut(s) 8
EcoRII CCWGG 3 cut(s) 825, 925, 955
EcoT14I CCWWGG 2 cut(s) 324, 672
EcoT38I GRGCYC 2 cut(s) 10, 975
EgeI GGCGCC 1 cut(s) 473
EheI GGCGCC 1 cut(s) 473
ErhI CCWWGG 2 cut(s) 324, 672
FaeI CATG 9 cut(s) 26, 198, 328, 388, 449, 530, 742, 923, 1086
FaqI GGGAC 2 cut(s) 507, 749
FatI CATG 9 cut(s) 22, 194, 324, 384, 445, 526, 738, 919, 1082
FbaI TGATCA 1 cut(s) 577
FokI GGATG 2 cut(s) 141, 655
FriOI GRGCYC 2 cut(s) 10, 975
FspBI CTAG 3 cut(s) 260, 429, 485
GlaI GCGC 1 cut(s) 473
GsaI CCCAGC 1 cut(s) 938
HaeII RGCGCY 1 cut(s) 475
HaeIII GGCC 4 cut(s) 454, 691, 984, 1008
HapII CCGG 3 cut(s) 451, 692, 963
HhaI GCGC 1 cut(s) 474
Hin1I GRCGYC 1 cut(s) 472
Hin1II CATG 9 cut(s) 26, 198, 328, 388, 449, 530, 742, 923, 1086
Hin6I GCGC 1 cut(s) 472
HinP1I GCGC 1 cut(s) 472
HincII GTYRAC 1 cut(s) 846
HindII GTYRAC 1 cut(s) 846
HindIII AAGCTT 2 cut(s) 68, 182
HinfI GANTC 3 cut(s) 215, 554, 678
HpaII CCGG 3 cut(s) 451, 692, 963
HphI GGTGA 3 cut(s) 288, 499, 806
Hpy166II GTNNAC 2 cut(s) 313, 846
Hpy188I TCNGA 4 cut(s) 12, 129, 393, 977
Hpy188III TCNNGA 5 cut(s) 369, 491, 703, 963, 1083
Hpy8I GTNNAC 2 cut(s) 313, 846
HpyAV CCTTC 4 cut(s) 411, 791, 866, 995
HpyCH4III ACNGT 6 cut(s) 270, 730, 794, 893, 1002, 1054
HpyCH4IV ACGT 1 cut(s) 340
HpyCH4V TGCA 5 cut(s) 147, 513, 604, 668, 761
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 429, 451, 480, 1034
HpyF3I CTNAG 2 cut(s) 9, 941
HpySE526I ACGT 1 cut(s) 340
Hsp92I GRCGYC 1 cut(s) 472
Hsp92II CATG 9 cut(s) 26, 198, 328, 388, 449, 530, 742, 923, 1086
HspAI GCGC 1 cut(s) 472
KasI GGCGCC 1 cut(s) 471
Kpn2I TCCGGA 1 cut(s) 962
KroI GCCGGC 1 cut(s) 691
KroNI GCCGGC 1 cut(s) 693
Ksp22I TGATCA 1 cut(s) 577
Kzo9I GATC 6 cut(s) 388, 487, 577, 809, 818, 959
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 2 cut(s) 5, 800
LweI GCATC 4 cut(s) 75, 156, 677, 1074
MaeI CTAG 3 cut(s) 260, 429, 485
MaeII ACGT 1 cut(s) 340
MaeIII GTNAC 2 cut(s) 505, 560
MalI GATC 6 cut(s) 390, 489, 579, 811, 820, 961
MbiI CCGCTC 1 cut(s) 803
MboI GATC 6 cut(s) 388, 487, 577, 809, 818, 959
MboII GAAGA 4 cut(s) 25, 252, 637, 903
MfeI CAATTG 1 cut(s) 762
MflI RGATCY 4 cut(s) 388, 487, 809, 959
MhlI GDGCHC 2 cut(s) 10, 975
MlsI TGGCCA 1 cut(s) 1008
MluCI AATT 6 cut(s) 132, 160, 331, 361, 659, 762
MluNI TGGCCA 1 cut(s) 1008
Mly113I GGCGCC 1 cut(s) 472
MlyI GAGTC 1 cut(s) 687
MnlI CCTC 7 cut(s) 102, 129, 347, 761, 779, 936, 1085
Mox20I TGGCCA 1 cut(s) 1008
MroI TCCGGA 1 cut(s) 962
MroNI GCCGGC 1 cut(s) 691
MscI TGGCCA 1 cut(s) 1008
MseI TTAA 3 cut(s) 657, 858, 1032
MslI CAYNNNNRTG 1 cut(s) 323
Msp20I TGGCCA 1 cut(s) 1008
MspI CCGG 3 cut(s) 451, 692, 963
MspR9I CCNGG 3 cut(s) 827, 927, 957
MunI CAATTG 1 cut(s) 762
Mva1269I GAATGC 3 cut(s) 18, 286, 318
MvaI CCWGG 3 cut(s) 827, 927, 957
MwoI GCNNNNNNNGC 5 cut(s) 32, 429, 451, 480, 1034
NaeI GCCGGC 1 cut(s) 693
NarI GGCGCC 1 cut(s) 472
NcoI CCATGG 1 cut(s) 324
NdeII GATC 6 cut(s) 388, 487, 577, 809, 818, 959
NgoMIV GCCGGC 1 cut(s) 691
NheI GCTAGC 1 cut(s) 259
NlaIII CATG 9 cut(s) 26, 198, 328, 388, 449, 530, 742, 923, 1086
NlaIV GGNNCC 4 cut(s) 473, 724, 744, 961
NmuCI GTSAC 1 cut(s) 505
NspI RCATGY 1 cut(s) 449
PagI TCATGA 1 cut(s) 1082
PaqCI CACCTGC 1 cut(s) 518
PciSI GCTCTTC 1 cut(s) 8
PctI GAATGC 3 cut(s) 18, 286, 318
PdiI GCCGGC 1 cut(s) 693
PfeI GAWTC 2 cut(s) 215, 554
PleI GAGTC 1 cut(s) 686
PluTI GGCGCC 1 cut(s) 475
PpsI GAGTC 1 cut(s) 686
PshBI ATTAAT 1 cut(s) 1032
Psp124BI GAGCTC 1 cut(s) 10
Psp6I CCWGG 3 cut(s) 825, 925, 955
PspFI CCCAGC 1 cut(s) 934
PspGI CCWGG 3 cut(s) 825, 925, 955
PspN4I GGNNCC 4 cut(s) 473, 724, 744, 961
PspPI GGNCC 1 cut(s) 689
PsrI GAACNNNNNNTAC 2 cut(s) 603, 635
PstI CTGCAG 2 cut(s) 515, 606
PsuI RGATCY 4 cut(s) 388, 487, 809, 959
RsaI GTAC 2 cut(s) 791, 924
RsaNI GTAC 2 cut(s) 790, 923
RseI CAYNNNNRTG 1 cut(s) 323
SacI GAGCTC 1 cut(s) 10
SapI GCTCTTC 1 cut(s) 8
SaqAI TTAA 3 cut(s) 657, 858, 1032
Sau3AI GATC 6 cut(s) 388, 487, 577, 809, 818, 959
Sau96I GGNCC 1 cut(s) 689
SchI GAGTC 1 cut(s) 687
ScrFI CCNGG 3 cut(s) 827, 927, 957
SduI GDGCHC 2 cut(s) 10, 975
SfaNI GCATC 4 cut(s) 75, 156, 677, 1074
SfcI CTRYAG 3 cut(s) 511, 602, 729
SfoI GGCGCC 1 cut(s) 473
SmiMI CAYNNNNRTG 1 cut(s) 323
Sse9I AATT 6 cut(s) 132, 160, 331, 361, 659, 762
SsiI CCGC 1 cut(s) 803
SspDI GGCGCC 1 cut(s) 471
SspMI CTAG 3 cut(s) 260, 429, 485
SstI GAGCTC 1 cut(s) 10
StyD4I CCNGG 3 cut(s) 825, 925, 955
StyI CCWWGG 2 cut(s) 324, 672
TaaI ACNGT 6 cut(s) 270, 730, 794, 893, 1002, 1054
TaiI ACGT 1 cut(s) 343
TaqI TCGA 3 cut(s) 370, 441, 784
TaqII GACCGA 1 cut(s) 259
TasI AATT 6 cut(s) 132, 160, 331, 361, 659, 762
TfiI GAWTC 2 cut(s) 215, 554
Tru1I TTAA 3 cut(s) 657, 858, 1032
Tru9I TTAA 3 cut(s) 657, 858, 1032
TscAI CASTG 4 cut(s) 462, 520, 733, 784
TseFI GTSAC 1 cut(s) 505
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 4 cut(s) 11, 411, 581, 1071
TspRI CASTG 4 cut(s) 462, 520, 733, 784
VspI ATTAAT 1 cut(s) 1032
XapI RAATTY 3 cut(s) 160, 361, 659
XceI RCATGY 1 cut(s) 449
XspI CTAG 3 cut(s) 260, 429, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.