Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0015354

Physical Location & Seq

Genomic Coordinates Forward (+)

12078741 .. 12084552

Gene Structure 5812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G146000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGGAGCCCAGAAGAGCATCCATGCTGGCAAAGCCAAGATTGATGTTAATGTCGATTTCACTCACAAGCTTTGTGCTTCATTGATGCTTCCTCCTTTGAGTAATGGCAGTGGCAGTCCTCTCTCTCTGATAATTGGGAGTCTTTGCATCAAACATCCAAACTTATTTGGTGGAAGTGAGAAGCTTGATGTGTCATGGGATAAGGGCCTGTATGATTCTAATGTTTTAATGGCTTATAGAAGACCAAGACCTGAATGGCTAGCTCAACAGTCTTTTGTAGTCCAGCATTCTATTTCACCCGAGATAGGGGTTCATGGCATTCCCATGGACAATTTCTCACGTTCAGGTAGTGGAGGTGTAAATTTGTCTCGATTATCAGTGGGCATGGATTTGAATGAGCCTGCAAGTTCCAAATGGAGTAGCACAACTAGCATAAAGTTTGAGCATGTCCGGCCACTGAATGATAATGGCCAGTCTATGAGCCGAGATCTAGATGGATTTCCTGTCACATGCAGTGGAAGTCCTCATGATAGCATGGTAATTCTAAAGCAAGAATCTCGGTATGCAAAGGCAAATGATCACAGTTTTTTTCATTTCAGTCTGCAGATAGAACAAGGGATACCAGTCCTATCTAAGTGGCTAATCTTCAACAAGTTTAAGTTTGTTGCATCAAAGGGAGTCAAACTTGGACCGGCATTTCTCTTGACGAGAATGACAGGTGGTTCCATTGTAGGGGACATGGCTCCTTACCAAGCATTTGCAATTGGAGGTCTTGGCAGTGTGCGAGGGTATGGTGAGGGTGCAGTGGGGTCTGGTAGATCTTGCTTAGTTGCAAATAGCGAATTGACATTGCCTTTTAACAAGATGCTGGAAGGTGCTGTTTTCTTGGACTGTGGAACTGATTTGGGGTCTGCTCATCATGTACCTGGAAACCCAGCCTTGAGGCAAGGTAAACCCGGATCTGGAGTTGGACTTGGATATGGCCTTCGTCTCAAATCACAGTTTGGCCATTTTGTGGTTGATTACGCTTTAAATGCCTGTCAACAAAAAACAGTCTATTTTGGCATCAGCAACCTTGCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0016020 GO:0016043 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bac_surface_Ag

Protein Analysis

362

Amino Acids

38.65

Weight (kDa)

9.05

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44160
fragaria_vesca	FvH4_3g26270
malus_domestica	MD11G1174200.v1.1
prunus_persica	Prupe.6G146000_v2.0.a1
pyrus_communis	pycom11g14900
rosa_chinensis	RchiOBHm_Chr5g0048701
rosa_laevigata	RLG00000034550
rosa_multiflora	Rmu_sc0006432.1_g000004
rosa_roxburghii	Rroxscaffold_1G00033100
rosa_rugosa	Rorug05G0240700
rosa_samantha	Rh5AG320500 Rh5BG330200 Rh5CG356200 Rh5DG341400
rosa_wichuraiana	Rw5G030170 Rw5G030260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1015
AclWI	GGATC	1 cut(s)	967
AcoI	YGGCCR	3 cut(s)	452, 469, 1006
AcsI	RAATTY	1 cut(s)	361
AfaI	GTAC	1 cut(s)	924
AfiI	CCNNNNNNNGG	5 cut(s)	305, 306, 732, 962, 1015
AgsI	TTSAA	2 cut(s)	394, 649
AjnI	CCWGG	1 cut(s)	925
AluBI	AGCT	3 cut(s)	70, 184, 263
AluI	AGCT	3 cut(s)	70, 184, 263
Alw26I	GTCTC	2 cut(s)	372, 995
AlwI	GGATC	1 cut(s)	967
Ama87I	CYCGRG	1 cut(s)	299
AoxI	GGCC	5 cut(s)	205, 452, 469, 982, 1006
ApoI	RAATTY	1 cut(s)	361
AspS9I	GGNCC	2 cut(s)	205, 689
AsuC2I	CCSGG	1 cut(s)	957
AsuHPI	GGTGA	2 cut(s)	288, 806
AsuNHI	GCTAGC	1 cut(s)	259
AvaI	CYCGRG	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	689
BalI	TGGCCA	2 cut(s)	471, 1008
BanII	GRGCYC	1 cut(s)	10
BbsI	GAAGAC	1 cut(s)	247
BccI	CCATC	1 cut(s)	488
BcgI	CGANNNNNNTGC	2 cut(s)	539, 573
BciT130I	CCWGG	1 cut(s)	927
BciVI	GTATCC	1 cut(s)	612
BclI	TGATCA	1 cut(s)	577
BcnI	CCSGG	1 cut(s)	957
BcoDI	GTCTC	2 cut(s)	372, 995
BfaI	CTAG	3 cut(s)	260, 429, 491
BfmI	CTRYAG	1 cut(s)	602
BfuI	GTATCC	1 cut(s)	612
BglII	AGATCT	2 cut(s)	487, 818
Bme1390I	CCNGG	2 cut(s)	927, 957
Bme18I	GGWCC	1 cut(s)	689
BmeT110I	CYCGRG	1 cut(s)	299
BmgT120I	GGNCC	2 cut(s)	205, 689
BmiI	GGNNCC	3 cut(s)	7, 724, 744
BmrFI	CCNGG	2 cut(s)	927, 957
BmsI	GCATC	6 cut(s)	27, 75, 156, 677, 855, 1074
BmtI	GCTAGC	1 cut(s)	263
BpiI	GAAGAC	1 cut(s)	247
BpmI	CTGGAG	1 cut(s)	984
BpuEI	CTTGAG	1 cut(s)	961
BpuMI	CCSGG	1 cut(s)	957
BsaJI	CCNNGG	1 cut(s)	324
Bsc4I	CCNNNNNNNGG	5 cut(s)	305, 306, 732, 962, 1015
Bse118I	RCCGGY	1 cut(s)	691
Bse1I	ACTGG	2 cut(s)	472, 623
Bse3DI	GCAATG	1 cut(s)	848
BseBI	CCWGG	1 cut(s)	927
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	2 cut(s)	18, 154
BseLI	CCNNNNNNNGG	5 cut(s)	305, 306, 732, 962, 1015
BseMI	GCAATG	1 cut(s)	848
BseNI	ACTGG	2 cut(s)	472, 623
BseYI	CCCAGC	1 cut(s)	934
BsgI	GTGCAG	1 cut(s)	822
BshFI	GGCC	5 cut(s)	207, 454, 471, 984, 1008
BsiHKCI	CYCGRG	1 cut(s)	299
BsiSI	CCGG	3 cut(s)	451, 692, 957
BslFI	GGGAC	1 cut(s)	749
BslI	CCNNNNNNNGG	5 cut(s)	305, 306, 732, 962, 1015
BsmAI	GTCTC	2 cut(s)	372, 995
BsmBI	CGTCTC	1 cut(s)	995
BsmFI	GGGAC	1 cut(s)	749
BsmI	GAATGC	2 cut(s)	286, 318
BsnI	GGCC	5 cut(s)	207, 454, 471, 984, 1008
BsoBI	CYCGRG	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	4 cut(s)	487, 577, 818, 959
Bsp19I	CCATGG	1 cut(s)	324
BspANI	GGCC	5 cut(s)	207, 454, 471, 984, 1008
BspHI	TCATGA	2 cut(s)	526, 1082
BspLI	GGNNCC	3 cut(s)	7, 724, 744
BspMAI	CTGCAG	1 cut(s)	606
BspOI	GCTAGC	1 cut(s)	263
BspPI	GGATC	1 cut(s)	967
BspQI	GCTCTTC	1 cut(s)	8
BsrDI	GCAATG	1 cut(s)	848
BsrFI	RCCGGY	1 cut(s)	691
BsrI	ACTGG	2 cut(s)	472, 623
BssAI	RCCGGY	1 cut(s)	691
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	4 cut(s)	487, 577, 818, 959
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	927
Bst4CI	ACNGT	5 cut(s)	270, 584, 893, 1002, 1054
Bst6I	CTCTTC	1 cut(s)	8
BstC8I	GCNNGC	3 cut(s)	28, 261, 402
BstDEI	CTNAG	2 cut(s)	633, 826
BstDSI	CCRYGG	1 cut(s)	324
BstF5I	GGATG	2 cut(s)	18, 154
BstKTI	GATC	4 cut(s)	490, 580, 821, 962
BstMAI	GTCTC	2 cut(s)	372, 995
BstMBI	GATC	4 cut(s)	487, 577, 818, 959
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 429, 451, 1034
BstNI	CCWGG	1 cut(s)	927
BstNSI	RCATGY	2 cut(s)	449, 513
BstSCI	CCNGG	2 cut(s)	925, 955
BstSFI	CTRYAG	1 cut(s)	602
BstV2I	GAAGAC	1 cut(s)	247
BstX2I	RGATCY	3 cut(s)	487, 818, 959
BstYI	RGATCY	3 cut(s)	487, 818, 959
BsuI	GTATCC	1 cut(s)	612
BsuRI	GGCC	5 cut(s)	207, 454, 471, 984, 1008
BtgI	CCRYGG	1 cut(s)	324
BtsCI	GGATG	2 cut(s)	18, 154
BtsI	GCAGTG	4 cut(s)	115, 520, 784, 810
BtsIMutI	CAGTG	6 cut(s)	115, 384, 455, 520, 784, 810
Cac8I	GCNNGC	3 cut(s)	28, 261, 402
CciI	TCATGA	2 cut(s)	526, 1082
Cfr10I	RCCGGY	1 cut(s)	691
Cfr13I	GGNCC	2 cut(s)	205, 689
Csp6I	GTAC	1 cut(s)	923
CviQI	GTAC	1 cut(s)	923
DdeI	CTNAG	2 cut(s)	633, 826
DpnI	GATC	4 cut(s)	489, 579, 820, 961
DpnII	GATC	4 cut(s)	487, 577, 818, 959
DraI	TTTAAA	1 cut(s)	1032
EaeI	YGGCCR	3 cut(s)	452, 469, 1006
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Eco130I	CCWWGG	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	689
Eco88I	CYCGRG	1 cut(s)	299
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	925
EcoT14I	CCWWGG	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	10
ErhI	CCWWGG	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	995
FaqI	GGGAC	1 cut(s)	749
FbaI	TGATCA	1 cut(s)	577
FokI	GGATG	2 cut(s)	5, 141
FriOI	GRGCYC	1 cut(s)	10
FspBI	CTAG	3 cut(s)	260, 429, 491
GsaI	CCCAGC	1 cut(s)	938
GsuI	CTGGAG	1 cut(s)	984
HaeIII	GGCC	5 cut(s)	207, 454, 471, 984, 1008
HapII	CCGG	3 cut(s)	451, 692, 957
HincII	GTYRAC	1 cut(s)	1043
HindII	GTYRAC	1 cut(s)	1043
HindIII	AAGCTT	2 cut(s)	68, 182
HinfI	GANTC	4 cut(s)	139, 215, 554, 678
HpaII	CCGG	3 cut(s)	451, 692, 957
HphI	GGTGA	2 cut(s)	288, 806
Hpy166II	GTNNAC	2 cut(s)	953, 1043
Hpy188I	TCNGA	1 cut(s)	129
Hpy188III	TCNNGA	6 cut(s)	369, 491, 527, 703, 963, 1083
Hpy8I	GTNNAC	2 cut(s)	953, 1043
HpyAV	CCTTC	2 cut(s)	866, 995
HpyCH4III	ACNGT	5 cut(s)	270, 584, 893, 1002, 1054
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	9 cut(s)	147, 404, 513, 566, 604, 668, 761, 803, 833
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 429, 451, 1034
HpyF3I	CTNAG	2 cut(s)	633, 826
HpySE526I	ACGT	1 cut(s)	340
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	4 cut(s)	487, 577, 818, 959
LguI	GCTCTTC	1 cut(s)	8
LmnI	GCTCC	2 cut(s)	5, 748
LweI	GCATC	6 cut(s)	27, 75, 156, 677, 855, 1074
MaeI	CTAG	3 cut(s)	260, 429, 491
MaeII	ACGT	1 cut(s)	340
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	4 cut(s)	489, 579, 820, 961
MboI	GATC	4 cut(s)	487, 577, 818, 959
MboII	GAAGA	3 cut(s)	25, 252, 637
MfeI	CAATTG	1 cut(s)	762
MflI	RGATCY	3 cut(s)	487, 818, 959
MhlI	GDGCHC	1 cut(s)	10
MlsI	TGGCCA	2 cut(s)	471, 1008
MluCI	AATT	6 cut(s)	132, 331, 361, 540, 762, 842
MluNI	TGGCCA	2 cut(s)	471, 1008
MlyI	GAGTC	2 cut(s)	148, 687
MmeI	TCCRAC	1 cut(s)	949
MnlI	CCTC	8 cut(s)	102, 129, 347, 534, 761, 779, 790, 936
Mox20I	TGGCCA	2 cut(s)	471, 1008
MscI	TGGCCA	2 cut(s)	471, 1008
MseI	TTAA	5 cut(s)	48, 227, 657, 858, 1031
MslI	CAYNNNNRTG	1 cut(s)	323
Msp20I	TGGCCA	2 cut(s)	471, 1008
MspI	CCGG	3 cut(s)	451, 692, 957
MspR9I	CCNGG	2 cut(s)	927, 957
MunI	CAATTG	1 cut(s)	762
Mva1269I	GAATGC	2 cut(s)	286, 318
MvaI	CCWGG	1 cut(s)	927
MwoI	GCNNNNNNNGC	4 cut(s)	32, 429, 451, 1034
NciI	CCSGG	1 cut(s)	957
NcoI	CCATGG	1 cut(s)	324
NdeII	GATC	4 cut(s)	487, 577, 818, 959
NheI	GCTAGC	1 cut(s)	259
NlaIV	GGNNCC	3 cut(s)	7, 724, 744
NmeAIII	GCCGAG	1 cut(s)	509
NmuCI	GTSAC	1 cut(s)	505
NspI	RCATGY	2 cut(s)	449, 513
PagI	TCATGA	2 cut(s)	526, 1082
PciSI	GCTCTTC	1 cut(s)	8
PctI	GAATGC	2 cut(s)	286, 318
PfeI	GAWTC	2 cut(s)	215, 554
PflMI	CCANNNNNTGG	1 cut(s)	1015
PleI	GAGTC	2 cut(s)	147, 686
PpsI	GAGTC	2 cut(s)	147, 686
Psp6I	CCWGG	1 cut(s)	925
PspFI	CCCAGC	1 cut(s)	934
PspGI	CCWGG	1 cut(s)	925
PspN4I	GGNNCC	3 cut(s)	7, 724, 744
PspPI	GGNCC	2 cut(s)	205, 689
PsrI	GAACNNNNNNTAC	2 cut(s)	603, 635
PstI	CTGCAG	1 cut(s)	606
PsuI	RGATCY	3 cut(s)	487, 818, 959
RsaI	GTAC	1 cut(s)	924
RsaNI	GTAC	1 cut(s)	923
RseI	CAYNNNNRTG	1 cut(s)	323
SapI	GCTCTTC	1 cut(s)	8
SaqAI	TTAA	5 cut(s)	48, 227, 657, 858, 1031
Sau3AI	GATC	4 cut(s)	487, 577, 818, 959
Sau96I	GGNCC	2 cut(s)	205, 689
SchI	GAGTC	2 cut(s)	148, 687
ScrFI	CCNGG	2 cut(s)	927, 957
SduI	GDGCHC	1 cut(s)	10
SfaNI	GCATC	6 cut(s)	27, 75, 156, 677, 855, 1074
SfcI	CTRYAG	1 cut(s)	602
SinI	GGWCC	1 cut(s)	689
SmiMI	CAYNNNNRTG	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	940
SmoI	CTYRAG	1 cut(s)	940
Sse9I	AATT	6 cut(s)	132, 331, 361, 540, 762, 842
SspMI	CTAG	3 cut(s)	260, 429, 491
StyD4I	CCNGG	2 cut(s)	925, 955
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	5 cut(s)	270, 584, 893, 1002, 1054
TaiI	ACGT	1 cut(s)	343
TaqI	TCGA	2 cut(s)	54, 370
TasI	AATT	6 cut(s)	132, 331, 361, 540, 762, 842
TfiI	GAWTC	2 cut(s)	215, 554
Tru1I	TTAA	5 cut(s)	48, 227, 657, 858, 1031
Tru9I	TTAA	5 cut(s)	48, 227, 657, 858, 1031
TscAI	CASTG	6 cut(s)	115, 384, 462, 520, 784, 810
TseFI	GTSAC	1 cut(s)	505
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	4 cut(s)	69, 302, 581, 1071
TspRI	CASTG	6 cut(s)	115, 384, 462, 520, 784, 810
Van91I	CCANNNNNTGG	1 cut(s)	1015
VpaK11BI	GGWCC	1 cut(s)	689
XapI	RAATTY	1 cut(s)	361
XbaI	TCTAGA	1 cut(s)	490
XceI	RCATGY	2 cut(s)	449, 513
XcmI	CCANNNNNNNNNTGG	1 cut(s)	252
XspI	CTAG	3 cut(s)	260, 429, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.