AT3G44380

Water Stress and Hypersensitive response

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016153
Physical Location & Seq
Reverse (-)
16036115 .. 16037216
1102 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G44380.1

Sequence Viewer

Length: 561 bp
ATGGGGTCAAGGGACCAAAAGGTAAAATGGAGCTGGAGCTCAGCCTTAATCGGAGCAGCATCAGCAACAGCAGCAGCTTCACTCCTAAGCGCCAAGCCAAAAGATCCAACATTCCACCTTATCTCCATAGACCTTACCTCACTGAAACTAAACCTCCCTGTCCTCGACGCAGAGCTAATGCTTACCGTACACGTCACTAACCCTAACATCGCAGCCATCCATTACTCCTCCACCAAGATGACAATCCTCTACGATGGCACGGTTCTTGGCTCAGCTGAGGTCAAAGCTGGCTCGCAACCGGCGAGATCTTGTCAGCTTCTCCGGCTACCGGCGCGTCTGGACGGTATGGAGCTTGCGCAACACGCGCGGCAGTTCTTTTCTGACGTGGCGAATAGAGAGATGAAACTTGAGGCTAAGCTTACTATTGAAGGAGCGGCTAAGGTTTTGTGGTGGGATCATAGTTTTAGGGTTCACGTGGATAGTTTTGTCACCGTTGATCCTGTTTTTCTTGATGTTATTGGTCAAGAGAATAAGTCTCAGATGGATTTGTTTCTTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

186

Amino Acids

20.41

Weight (kDa)

6.58

Isoelectric Point (pI)

36.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 62 - 160 4.6e-15 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016153)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44380
fragaria_vesca FvH4_3g25140 FvH4_3g25160
malus_domestica MD03G1147800.v1.1 MD11G1166600.v1.1
prunus_persica Prupe.6G132600_v2.0.a1 Prupe.6G132700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046191 RchiOBHm_Chr5g0046241
rosa_laevigata RLG00000034378
rosa_multiflora Rmu_sc0017875.1_g000001
rosa_roxburghii Rroxscaffold_1G00035440
rosa_rugosa Rorug05G0224500
rosa_samantha Rh5DG324600
rosa_wichuraiana Rw5G028600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 357
AccBSI CCGCTC 1 cut(s) 434
AccII CGCG 3 cut(s) 334, 365, 367
AciI CCGC 2 cut(s) 367, 434
AclWI GGATC 3 cut(s) 98, 462, 491
AcvI CACGTG 1 cut(s) 475
AfaI GTAC 1 cut(s) 189
AfiI CCNNNNNNNGG 1 cut(s) 328
AflIII ACRYGT 1 cut(s) 190
AgsI TTSAA 1 cut(s) 428
AjiI CACGTC 2 cut(s) 193, 385
AluBI AGCT 9 cut(s) 33, 39, 77, 175, 275, 287, 316, 352, 418
AluI AGCT 9 cut(s) 33, 39, 77, 175, 275, 287, 316, 352, 418
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 1 cut(s) 540
AlwI GGATC 3 cut(s) 98, 462, 491
ApeKI GCWGC 4 cut(s) 56, 71, 74, 212
AspLEI GCGC 4 cut(s) 92, 334, 358, 367
AspS9I GGNCC 1 cut(s) 13
AsuHPI GGTGA 1 cut(s) 481
AvaII GGWCC 1 cut(s) 13
BanII GRGCYC 1 cut(s) 41
BbrPI CACGTG 1 cut(s) 475
Bbv12I GWGCWC 1 cut(s) 41
BbvCI CCTCAGC 1 cut(s) 276
BbvI GCAGC 4 cut(s) 68, 83, 86, 224
BccI CCATC 3 cut(s) 224, 248, 535
BcoDI GTCTC 1 cut(s) 540
BfoI RGCGCY 1 cut(s) 93
BglII AGATCT 1 cut(s) 305
BisI GCNGC 6 cut(s) 57, 72, 75, 213, 368, 435
BlpI GCTNAGC 3 cut(s) 40, 271, 414
BlsI GCNGC 6 cut(s) 58, 73, 76, 214, 369, 436
Bme18I GGWCC 1 cut(s) 13
BmgBI CACGTC 2 cut(s) 193, 385
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 14
BmsI GCATC 1 cut(s) 68
BpmI CTGGAG 1 cut(s) 55
Bpu10I CCTNAGC 3 cut(s) 86, 276, 438
Bpu1102I GCTNAGC 3 cut(s) 40, 271, 414
BpuEI CTTGAG 1 cut(s) 428
BsaAI YACGTR 1 cut(s) 475
BsaBI GATNNNNATC 1 cut(s) 242
BsaXI ACNNNNNCTCC 4 cut(s) 107, 137, 138, 168
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse118I RCCGGY 2 cut(s) 298, 328
Bse8I GATNNNNATC 1 cut(s) 242
BseGI GGATG 1 cut(s) 216
BseJI GATNNNNATC 1 cut(s) 242
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMII CTCAG 4 cut(s) 54, 267, 285, 551
BseRI GAGGAG 1 cut(s) 217
BseXI GCAGC 4 cut(s) 68, 83, 86, 224
Bsh1236I CGCG 3 cut(s) 334, 365, 367
BsiHKAI GWGCWC 1 cut(s) 41
BsiSI CCGG 3 cut(s) 299, 322, 329
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 328
BsmAI GTCTC 1 cut(s) 540
BsmFI GGGAC 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 4 cut(s) 103, 305, 454, 496
Bsp1720I GCTNAGC 3 cut(s) 40, 271, 414
BspACI CCGC 2 cut(s) 367, 434
BspCNI CTCAG 4 cut(s) 53, 268, 284, 550
BspFNI CGCG 3 cut(s) 334, 365, 367
BspLI GGNNCC 1 cut(s) 14
BspPI GGATC 3 cut(s) 98, 462, 491
BsrBI CCGCTC 1 cut(s) 434
BsrFI RCCGGY 2 cut(s) 298, 328
BssAI RCCGGY 2 cut(s) 298, 328
BssMI GATC 4 cut(s) 103, 305, 454, 496
Bst4CI ACNGT 4 cut(s) 187, 262, 344, 493
BstBAI YACGTR 1 cut(s) 475
BstC8I GCNNGC 3 cut(s) 289, 293, 354
BstDEI CTNAG 7 cut(s) 40, 86, 271, 276, 414, 438, 537
BstF5I GGATG 1 cut(s) 216
BstFNI CGCG 3 cut(s) 334, 365, 367
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 4 cut(s) 92, 334, 358, 367
BstKTI GATC 4 cut(s) 106, 308, 457, 499
BstMAI GTCTC 1 cut(s) 540
BstMBI GATC 4 cut(s) 103, 305, 454, 496
BstMWI GCNNNNNNNGC 6 cut(s) 62, 71, 322, 331, 362, 364
BstUI CGCG 3 cut(s) 334, 365, 367
BstV1I GCAGC 4 cut(s) 68, 83, 86, 224
BstX2I RGATCY 2 cut(s) 103, 305
BstYI RGATCY 2 cut(s) 103, 305
BtgZI GCGATG 1 cut(s) 193
BtrI CACGTC 2 cut(s) 193, 385
BtsCI GGATG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 140
Cac8I GCNNGC 3 cut(s) 289, 293, 354
CfoI GCGC 4 cut(s) 92, 334, 358, 367
Cfr10I RCCGGY 2 cut(s) 298, 328
Cfr13I GGNCC 1 cut(s) 13
CseI GACGC 2 cut(s) 176, 323
Csp6I GTAC 1 cut(s) 188
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 7 cut(s) 40, 86, 271, 276, 414, 438, 537
DpnI GATC 4 cut(s) 105, 307, 456, 498
DpnII GATC 4 cut(s) 103, 305, 454, 496
Ecl136II GAGCTC 1 cut(s) 39
Eco24I GRGCYC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 13
Eco53kI GAGCTC 1 cut(s) 39
Eco72I CACGTG 1 cut(s) 475
EcoICRI GAGCTC 1 cut(s) 39
EcoT38I GRGCYC 1 cut(s) 41
FaiI YATR 3 cut(s) 128, 347, 459
FaqI GGGAC 1 cut(s) 26
Fnu4HI GCNGC 6 cut(s) 57, 72, 75, 213, 368, 435
FokI GGATG 1 cut(s) 203
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 6 cut(s) 57, 72, 75, 213, 368, 435
FspI TGCGCA 1 cut(s) 357
GlaI GCGC 4 cut(s) 91, 333, 357, 366
GluI GCNGC 6 cut(s) 57, 72, 75, 213, 368, 435
GsuI CTGGAG 1 cut(s) 55
HaeII RGCGCY 1 cut(s) 93
HapII CCGG 3 cut(s) 299, 322, 329
HgaI GACGC 2 cut(s) 176, 323
HhaI GCGC 4 cut(s) 92, 334, 358, 367
Hin6I GCGC 4 cut(s) 90, 332, 356, 365
HinP1I GCGC 4 cut(s) 90, 332, 356, 365
HindIII AAGCTT 1 cut(s) 416
HpaII CCGG 3 cut(s) 299, 322, 329
HphI GGTGA 1 cut(s) 481
Hpy166II GTNNAC 2 cut(s) 190, 472
Hpy188I TCNGA 3 cut(s) 53, 382, 540
Hpy188III TCNNGA 3 cut(s) 338, 509, 524
Hpy8I GTNNAC 2 cut(s) 190, 472
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 422
HpyCH4III ACNGT 4 cut(s) 187, 262, 344, 493
HpyCH4IV ACGT 3 cut(s) 192, 384, 474
HpyF10VI GCNNNNNNNGC 6 cut(s) 62, 71, 322, 331, 362, 364
HpyF3I CTNAG 7 cut(s) 40, 86, 271, 276, 414, 438, 537
HpySE526I ACGT 3 cut(s) 192, 384, 474
HspAI GCGC 4 cut(s) 90, 332, 356, 365
Kzo9I GATC 4 cut(s) 103, 305, 454, 496
LmnI GCTCC 5 cut(s) 30, 36, 53, 349, 431
LpnPI CCDG 8 cut(s) 19, 171, 273, 312, 323, 335, 342, 513
Lsp1109I GCAGC 4 cut(s) 68, 83, 86, 224
LweI GCATC 1 cut(s) 68
MaeII ACGT 3 cut(s) 192, 384, 474
MaeIII GTNAC 2 cut(s) 193, 487
MalI GATC 4 cut(s) 105, 307, 456, 498
MbiI CCGCTC 1 cut(s) 434
MboI GATC 4 cut(s) 103, 305, 454, 496
MflI RGATCY 2 cut(s) 103, 305
MhlI GDGCHC 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 7 cut(s) 148, 164, 173, 238, 257, 271, 403
MseI TTAA 2 cut(s) 47, 559
MslI CAYNNNNRTG 1 cut(s) 236
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 3 cut(s) 299, 322, 329
MvnI CGCG 3 cut(s) 334, 365, 367
MwoI GCNNNNNNNGC 6 cut(s) 62, 71, 322, 331, 362, 364
NdeII GATC 4 cut(s) 103, 305, 454, 496
NlaIV GGNNCC 1 cut(s) 14
NmuCI GTSAC 2 cut(s) 193, 487
NsbI TGCGCA 1 cut(s) 357
PcsI WCGNNNNNNNCGW 1 cut(s) 299
PkrI GCNGC 6 cut(s) 58, 73, 76, 214, 369, 436
PmaCI CACGTG 1 cut(s) 475
PmlI CACGTG 1 cut(s) 475
Ppu21I YACGTR 1 cut(s) 475
Psp124BI GAGCTC 1 cut(s) 41
PspCI CACGTG 1 cut(s) 475
PspN4I GGNNCC 1 cut(s) 14
PspPI GGNCC 1 cut(s) 13
PsuI RGATCY 2 cut(s) 103, 305
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
RseI CAYNNNNRTG 1 cut(s) 236
SacI GAGCTC 1 cut(s) 41
SaqAI TTAA 2 cut(s) 47, 559
SatI GCNGC 6 cut(s) 57, 72, 75, 213, 368, 435
Sau3AI GATC 4 cut(s) 103, 305, 454, 496
Sau96I GGNCC 1 cut(s) 13
SduI GDGCHC 1 cut(s) 41
SfaNI GCATC 1 cut(s) 68
SinI GGWCC 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
SsiI CCGC 2 cut(s) 367, 434
SstI GAGCTC 1 cut(s) 41
TaaI ACNGT 4 cut(s) 187, 262, 344, 493
TaiI ACGT 3 cut(s) 195, 387, 477
TaqI TCGA 1 cut(s) 165
TauI GCSGC 2 cut(s) 370, 437
Tru1I TTAA 2 cut(s) 47, 559
Tru9I TTAA 2 cut(s) 47, 559
TscAI CASTG 1 cut(s) 147
TseFI GTSAC 2 cut(s) 193, 487
TseI GCWGC 4 cut(s) 56, 71, 74, 212
Tsp45I GTSAC 2 cut(s) 193, 487
TspDTI ATGAA 1 cut(s) 416
TspRI CASTG 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.