Prupe.6G132600_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016153
Physical Location & Seq
Reverse (-)
10449960 .. 10450517
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G132600.1

Sequence Viewer

Length: 558 bp
ATGGGCATAAAGCTCGACTGGAGCTGGAGCTCAGCTATAATCGGCGCGGCGTCGGCTTTAGCAACAACGGCTCTAATATCCTCCAAGCCCAAGGACCCCACCTTCGACGTCGTCTCAATCAAGCTCACCTCCTTTAAGCTCAACTTCCCGCTCCTCGACGCCGAGCTCATCCTCACCGTCCAAGTCACCAACCCCAACGTGGTGCCCATCCAGTATTCCTCCACCACCATGTCCATCTTCTACAAGGGCGCACTTCTCGGCTCGGCAGATGTCGAAGCCGGCTCCCAGCCGGCCAAGTCGTCCCAGCTGCTTCAGCTCCCGGCTCGGCTGGACGGGCTCCAGCTCGCCCACCACGCCGCTAGCTTTATCGCTGACGCGGCGAGGCGTGAGATGGTGCTTGACGCTGCCGTGGATATCGCTGGTACCGCCAGGGTTTTGTGGTGGGATCATAAGTTTAAGGTCCACGTGGATAGTCACATCACCGTGGATCCGGTTTTTCTCGAAGTCATTGATCAGGAAAATAAGTCCAAGATGGACATTTCTCTTACTGGAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

186

Amino Acids

19.97

Weight (kDa)

5.65

Isoelectric Point (pI)

32.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016153)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44380
fragaria_vesca FvH4_3g25140 FvH4_3g25160
malus_domestica MD03G1147800.v1.1 MD11G1166600.v1.1
prunus_persica Prupe.6G132600_v2.0.a1 Prupe.6G132700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046191 RchiOBHm_Chr5g0046241
rosa_laevigata RLG00000034378
rosa_multiflora Rmu_sc0017875.1_g000001
rosa_roxburghii Rroxscaffold_1G00035440
rosa_rugosa Rorug05G0224500
rosa_samantha Rh5DG324600
rosa_wichuraiana Rw5G028600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 111
Acc65I GGTACC 1 cut(s) 422
AccB1I GGYRCC 2 cut(s) 202, 422
AccBSI CCGCTC 1 cut(s) 151
AccII CGCG 2 cut(s) 47, 377
AciI CCGC 5 cut(s) 47, 149, 357, 377, 426
AclWI GGATC 3 cut(s) 453, 482, 495
AcoI YGGCCR 1 cut(s) 291
AcuI CTGAAG 1 cut(s) 296
AcvI CACGTG 1 cut(s) 466
AcyI GRCGYC 3 cut(s) 50, 108, 159
AfaI GTAC 1 cut(s) 424
AfiI CCNNNNNNNGG 1 cut(s) 199
AjnI CCWGG 1 cut(s) 428
Alw21I GWGCWC 2 cut(s) 32, 168
Alw26I GTCTC 1 cut(s) 118
AlwI GGATC 3 cut(s) 453, 482, 495
AoxI GGCC 1 cut(s) 291
ApeKI GCWGC 2 cut(s) 307, 404
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
Asp718I GGTACC 1 cut(s) 422
AspLEI GCGC 2 cut(s) 47, 251
AspS9I GGNCC 2 cut(s) 94, 460
AsuC2I CCSGG 1 cut(s) 320
AsuHPI GGTGA 4 cut(s) 118, 166, 178, 472
AsuNHI GCTAGC 1 cut(s) 359
AvaII GGWCC 2 cut(s) 94, 460
BaeGI GKGCMC 1 cut(s) 207
BamHI GGATCC 1 cut(s) 487
BanI GGYRCC 2 cut(s) 202, 422
BanII GRGCYC 3 cut(s) 32, 168, 339
BbrPI CACGTG 1 cut(s) 466
Bbv12I GWGCWC 2 cut(s) 32, 168
BbvI GCAGC 2 cut(s) 294, 391
BccI CCATC 4 cut(s) 215, 242, 385, 526
BceAI ACGGC 2 cut(s) 84, 392
BcgI CGANNNNNNTGC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 430
BclI TGATCA 1 cut(s) 511
BcnI CCSGG 1 cut(s) 320
BcoDI GTCTC 1 cut(s) 118
BfaI CTAG 1 cut(s) 360
BisI GCNGC 5 cut(s) 48, 308, 357, 378, 405
BlpI GCTNAGC 1 cut(s) 31
BlsI GCNGC 5 cut(s) 49, 309, 358, 379, 406
Bme1390I CCNGG 2 cut(s) 320, 430
Bme18I GGWCC 2 cut(s) 94, 460
BmgT120I GGNCC 2 cut(s) 94, 460
BmiI GGNNCC 6 cut(s) 96, 204, 283, 338, 424, 489
BmrFI CCNGG 2 cut(s) 320, 430
BmtI GCTAGC 1 cut(s) 363
BpmI CTGGAG 3 cut(s) 40, 46, 323
Bpu1102I GCTNAGC 1 cut(s) 31
BpuMI CCSGG 1 cut(s) 320
BsaAI YACGTR 1 cut(s) 466
BsaHI GRCGYC 3 cut(s) 50, 108, 159
BsaJI CCNNGG 4 cut(s) 90, 408, 429, 483
BsaWI WCCGGW 1 cut(s) 490
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse118I RCCGGY 2 cut(s) 278, 289
Bse1I ACTGG 3 cut(s) 23, 211, 553
BseBI CCWGG 1 cut(s) 430
BseDI CCNNGG 4 cut(s) 90, 408, 429, 483
BseGI GGATG 2 cut(s) 168, 207
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 3 cut(s) 23, 211, 553
BseRI GAGGAG 1 cut(s) 143
BseSI GKGCMC 1 cut(s) 207
BseXI GCAGC 2 cut(s) 294, 391
BseYI CCCAGC 2 cut(s) 285, 303
Bsh1236I CGCG 2 cut(s) 47, 377
BshFI GGCC 1 cut(s) 293
BshNI GGYRCC 2 cut(s) 202, 422
BsiHKAI GWGCWC 2 cut(s) 32, 168
BsiSI CCGG 4 cut(s) 279, 290, 320, 491
BslFI GGGAC 1 cut(s) 286
BslI CCNNNNNNNGG 1 cut(s) 199
BsmAI GTCTC 1 cut(s) 118
BsmBI CGTCTC 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 286
BsnI GGCC 1 cut(s) 293
Bsp1286I GDGCHC 4 cut(s) 32, 168, 207, 339
Bsp143I GATC 3 cut(s) 445, 487, 511
Bsp1720I GCTNAGC 1 cut(s) 31
BspACI CCGC 5 cut(s) 47, 149, 357, 377, 426
BspANI GGCC 1 cut(s) 293
BspCNI CTCAG 1 cut(s) 44
BspFNI CGCG 2 cut(s) 47, 377
BspLI GGNNCC 6 cut(s) 96, 204, 283, 338, 424, 489
BspOI GCTAGC 1 cut(s) 363
BspPI GGATC 3 cut(s) 453, 482, 495
BspT107I GGYRCC 2 cut(s) 202, 422
BsrBI CCGCTC 1 cut(s) 151
BsrFI RCCGGY 2 cut(s) 278, 289
BsrI ACTGG 3 cut(s) 23, 211, 553
BssAI RCCGGY 2 cut(s) 278, 289
BssECI CCNNGG 4 cut(s) 90, 408, 429, 483
BssMI GATC 3 cut(s) 445, 487, 511
BssNI GRCGYC 3 cut(s) 50, 108, 159
BssT1I CCWWGG 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 430
Bst4CI ACNGT 2 cut(s) 178, 484
BstACI GRCGYC 3 cut(s) 50, 108, 159
BstBAI YACGTR 1 cut(s) 466
BstC8I GCNNGC 4 cut(s) 280, 291, 345, 361
BstDEI CTNAG 1 cut(s) 31
BstDSI CCRYGG 2 cut(s) 408, 483
BstF5I GGATG 2 cut(s) 168, 207
BstFNI CGCG 2 cut(s) 47, 377
BstHHI GCGC 2 cut(s) 47, 251
BstKTI GATC 3 cut(s) 448, 490, 514
BstMAI GTCTC 1 cut(s) 118
BstMBI GATC 3 cut(s) 445, 487, 511
BstMWI GCNNNNNNNGC 7 cut(s) 53, 68, 313, 334, 353, 377, 425
BstNI CCWGG 1 cut(s) 430
BstSCI CCNGG 2 cut(s) 318, 428
BstSLI GKGCMC 1 cut(s) 207
BstUI CGCG 2 cut(s) 47, 377
BstV1I GCAGC 2 cut(s) 294, 391
BstX2I RGATCY 1 cut(s) 487
BstYI RGATCY 1 cut(s) 487
BsuRI GGCC 1 cut(s) 293
BtgI CCRYGG 2 cut(s) 408, 483
BtsCI GGATG 2 cut(s) 168, 207
Cac8I GCNNGC 4 cut(s) 280, 291, 345, 361
CfoI GCGC 2 cut(s) 47, 251
Cfr10I RCCGGY 2 cut(s) 278, 289
Cfr13I GGNCC 2 cut(s) 94, 460
CseI GACGC 4 cut(s) 39, 167, 383, 410
Csp6I GTAC 1 cut(s) 423
CviAII CATG 1 cut(s) 229
CviQI GTAC 1 cut(s) 423
DdeI CTNAG 1 cut(s) 31
DpnI GATC 3 cut(s) 447, 489, 513
DpnII GATC 3 cut(s) 445, 487, 511
EaeI YGGCCR 1 cut(s) 291
Ecl136II GAGCTC 2 cut(s) 30, 166
Eco130I CCWWGG 1 cut(s) 90
Eco24I GRGCYC 3 cut(s) 32, 168, 339
Eco32I GATATC 1 cut(s) 415
Eco47I GGWCC 2 cut(s) 94, 460
Eco53kI GAGCTC 2 cut(s) 30, 166
Eco57I CTGAAG 1 cut(s) 296
Eco72I CACGTG 1 cut(s) 466
EcoICRI GAGCTC 2 cut(s) 30, 166
EcoO109I RGGNCCY 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 428
EcoRV GATATC 1 cut(s) 415
EcoT14I CCWWGG 1 cut(s) 90
EcoT38I GRGCYC 3 cut(s) 32, 168, 339
ErhI CCWWGG 1 cut(s) 90
Esp3I CGTCTC 1 cut(s) 118
FaeI CATG 1 cut(s) 232
FaiI YATR 4 cut(s) 8, 38, 230, 450
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FaqI GGGAC 1 cut(s) 286
FatI CATG 1 cut(s) 228
FauI CCCGC 1 cut(s) 156
FbaI TGATCA 1 cut(s) 511
Fnu4HI GCNGC 5 cut(s) 48, 308, 357, 378, 405
FokI GGATG 2 cut(s) 155, 194
FriOI GRGCYC 3 cut(s) 32, 168, 339
Fsp4HI GCNGC 5 cut(s) 48, 308, 357, 378, 405
FspBI CTAG 1 cut(s) 360
GlaI GCGC 2 cut(s) 46, 250
GluI GCNGC 5 cut(s) 48, 308, 357, 378, 405
GsaI CCCAGC 2 cut(s) 289, 307
GsuI CTGGAG 3 cut(s) 40, 46, 323
HaeIII GGCC 1 cut(s) 293
HapII CCGG 4 cut(s) 279, 290, 320, 491
HgaI GACGC 4 cut(s) 39, 167, 383, 410
HhaI GCGC 2 cut(s) 47, 251
Hin1I GRCGYC 3 cut(s) 50, 108, 159
Hin1II CATG 1 cut(s) 232
Hin6I GCGC 2 cut(s) 45, 249
HinP1I GCGC 2 cut(s) 45, 249
HpaII CCGG 4 cut(s) 279, 290, 320, 491
HphI GGTGA 4 cut(s) 118, 166, 178, 472
Hpy166II GTNNAC 1 cut(s) 463
Hpy188III TCNNGA 2 cut(s) 500, 515
Hpy8I GTNNAC 1 cut(s) 463
Hpy99I CGWCG 4 cut(s) 55, 110, 113, 161
HpyAV CCTTC 1 cut(s) 112
HpyCH4III ACNGT 2 cut(s) 178, 484
HpyCH4IV ACGT 3 cut(s) 108, 198, 465
HpyF10VI GCNNNNNNNGC 7 cut(s) 53, 68, 313, 334, 353, 377, 425
HpyF3I CTNAG 1 cut(s) 31
HpySE526I ACGT 3 cut(s) 108, 198, 465
Hsp92I GRCGYC 3 cut(s) 50, 108, 159
Hsp92II CATG 1 cut(s) 232
HspAI GCGC 2 cut(s) 45, 249
KpnI GGTACC 1 cut(s) 426
KroI GCCGGC 2 cut(s) 278, 289
KroNI GCCGGC 2 cut(s) 280, 291
Ksp22I TGATCA 1 cut(s) 511
Kzo9I GATC 3 cut(s) 445, 487, 511
LmnI GCTCC 6 cut(s) 21, 27, 156, 287, 321, 342
Lsp1109I GCAGC 2 cut(s) 294, 391
MaeI CTAG 1 cut(s) 360
MaeII ACGT 3 cut(s) 108, 198, 465
MaeIII GTNAC 2 cut(s) 184, 473
MalI GATC 3 cut(s) 447, 489, 513
MbiI CCGCTC 1 cut(s) 151
MboI GATC 3 cut(s) 445, 487, 511
MboII GAAGA 1 cut(s) 229
MflI RGATCY 1 cut(s) 487
MhlI GDGCHC 4 cut(s) 32, 168, 207, 339
MnlI CCTC 6 cut(s) 91, 139, 164, 182, 229, 375
MroNI GCCGGC 2 cut(s) 278, 289
MseI TTAA 2 cut(s) 135, 456
MslI CAYNNNNRTG 2 cut(s) 227, 482
MspA1I CMGCKG 1 cut(s) 307
MspI CCGG 4 cut(s) 279, 290, 320, 491
MspR9I CCNGG 2 cut(s) 320, 430
MvaI CCWGG 1 cut(s) 430
MvnI CGCG 2 cut(s) 47, 377
MwoI GCNNNNNNNGC 7 cut(s) 53, 68, 313, 334, 353, 377, 425
NaeI GCCGGC 2 cut(s) 280, 291
NciI CCSGG 1 cut(s) 320
NdeII GATC 3 cut(s) 445, 487, 511
NgoMIV GCCGGC 2 cut(s) 278, 289
NheI GCTAGC 1 cut(s) 359
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 6 cut(s) 96, 204, 283, 338, 424, 489
NmeAIII GCCGAG 4 cut(s) 187, 237, 242, 304
NmuCI GTSAC 2 cut(s) 184, 473
PdiI GCCGGC 2 cut(s) 280, 291
PflFI GACNNNGTC 1 cut(s) 110
PkrI GCNGC 5 cut(s) 49, 309, 358, 379, 406
PmaCI CACGTG 1 cut(s) 466
PmlI CACGTG 1 cut(s) 466
Ppu21I YACGTR 1 cut(s) 466
PpuMI RGGWCCY 1 cut(s) 94
Psp124BI GAGCTC 2 cut(s) 32, 168
Psp5II RGGWCCY 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 428
PspCI CACGTG 1 cut(s) 466
PspFI CCCAGC 2 cut(s) 285, 303
PspGI CCWGG 1 cut(s) 428
PspN4I GGNNCC 6 cut(s) 96, 204, 283, 338, 424, 489
PspPI GGNCC 2 cut(s) 94, 460
PspPPI RGGWCCY 1 cut(s) 94
PsuI RGATCY 1 cut(s) 487
PsyI GACNNNGTC 1 cut(s) 110
PvuII CAGCTG 1 cut(s) 307
RsaI GTAC 1 cut(s) 424
RsaNI GTAC 1 cut(s) 423
RseI CAYNNNNRTG 2 cut(s) 227, 482
SacI GAGCTC 2 cut(s) 32, 168
SaqAI TTAA 2 cut(s) 135, 456
SatI GCNGC 5 cut(s) 48, 308, 357, 378, 405
Sau3AI GATC 3 cut(s) 445, 487, 511
Sau96I GGNCC 2 cut(s) 94, 460
ScrFI CCNGG 2 cut(s) 320, 430
SduI GDGCHC 4 cut(s) 32, 168, 207, 339
SinI GGWCC 2 cut(s) 94, 460
SmiMI CAYNNNNRTG 2 cut(s) 227, 482
SsiI CCGC 5 cut(s) 47, 149, 357, 377, 426
SspMI CTAG 1 cut(s) 360
SstI GAGCTC 2 cut(s) 32, 168
StyD4I CCNGG 2 cut(s) 318, 428
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 2 cut(s) 178, 484
TaiI ACGT 3 cut(s) 111, 201, 468
TaqI TCGA 5 cut(s) 15, 105, 156, 273, 501
TauI GCSGC 3 cut(s) 50, 359, 380
Tru1I TTAA 2 cut(s) 135, 456
Tru9I TTAA 2 cut(s) 135, 456
TseFI GTSAC 2 cut(s) 184, 473
TseI GCWGC 2 cut(s) 307, 404
Tsp45I GTSAC 2 cut(s) 184, 473
Tth111I GACNNNGTC 1 cut(s) 110
VpaK11BI GGWCC 2 cut(s) 94, 460
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XspI CTAG 1 cut(s) 360
ZraI GACGTC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.