Prupe.6G132700_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016153
Physical Location & Seq
Reverse (-)
10453254 .. 10453805
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G132700.1

Sequence Viewer

Length: 552 bp
ATGGGCAAAAAGGTCAAATGGAGCTGGACCTCAGCAATTATCGGAGCGGCGTCGGCTTTAGCGACGACAGCGCTGTTGTCGTCGAAGCCCAAGGACCCAACCTTCCACCTCATCTCCATCAATCTCACCTCCTTCAAGCTCAACCTCCCAGTTCTCGACACCGACCTCATCCTCAACGTCCACGTCACCAACCCCAACATCACAGCCGTCCACTACTCCTCCACCTCCATGTCCATCTTCTACAACGGCTCGCTTCTGGGCTCGGCCGAAGTTCAAGCCGGCTCTCAGCCGCCCAAGTCATGCCAGCTGCTCCGCCTGCCTGCGCGGCTCGACGGGCTCCAGCTGGCCCACCACGCCGCTACCTTTGTTGCTGACGTGGCGAAGCGGGAGATGGTGCTCGACGCGGCTGTGGATATTGCTGGGGCGGCGAGGATTTTGTGGTGGGATCACAAGTTTAAGGTTCACGTGGATAGTCGCGTGACCGTCGATCCAGTTTTTCTTGACGTCATTGATCAGGAAAATAAGTTGGAGATGGAGATTTTTCTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

184

Amino Acids

19.97

Weight (kDa)

6.64

Isoelectric Point (pI)

33.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016153)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44380
fragaria_vesca FvH4_3g25140 FvH4_3g25160
malus_domestica MD03G1147800.v1.1 MD11G1166600.v1.1
prunus_persica Prupe.6G132600_v2.0.a1 Prupe.6G132700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0046191 RchiOBHm_Chr5g0046241
rosa_laevigata RLG00000034378
rosa_multiflora Rmu_sc0017875.1_g000001
rosa_roxburghii Rroxscaffold_1G00035440
rosa_rugosa Rorug05G0224500
rosa_samantha Rh5DG324600
rosa_wichuraiana Rw5G028600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 507
AccBSI CCGCTC 1 cut(s) 47
AccII CGCG 3 cut(s) 325, 404, 477
AciI CCGC 8 cut(s) 47, 290, 313, 325, 357, 385, 404, 425
AclWI GGATC 2 cut(s) 453, 482
AcoI YGGCCR 1 cut(s) 264
AcvI CACGTG 1 cut(s) 466
AcyI GRCGYC 2 cut(s) 50, 504
AfeI AGCGCT 1 cut(s) 72
AgsI TTSAA 2 cut(s) 136, 275
AjiI CACGTC 2 cut(s) 184, 376
AluBI AGCT 4 cut(s) 24, 139, 307, 343
AluI AGCT 4 cut(s) 24, 139, 307, 343
Alw21I GWGCWC 1 cut(s) 399
AlwI GGATC 2 cut(s) 453, 482
Aor51HI AGCGCT 1 cut(s) 72
AoxI GGCC 2 cut(s) 264, 345
ApeKI GCWGC 1 cut(s) 307
AspLEI GCGC 2 cut(s) 73, 325
AspS9I GGNCC 3 cut(s) 27, 94, 346
AsuHPI GGTGA 2 cut(s) 118, 178
AvaII GGWCC 2 cut(s) 27, 94
BanII GRGCYC 2 cut(s) 263, 339
BbrPI CACGTG 1 cut(s) 466
Bbv12I GWGCWC 1 cut(s) 399
BbvCI CCTCAGC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 294
BccI CCATC 4 cut(s) 125, 242, 385, 526
BceAI ACGGC 2 cut(s) 191, 262
BclI TGATCA 1 cut(s) 511
BfoI RGCGCY 1 cut(s) 74
BglI GCCNNNNNGGC 1 cut(s) 325
BisI GCNGC 7 cut(s) 48, 290, 308, 326, 357, 405, 426
BlsI GCNGC 7 cut(s) 49, 291, 309, 327, 358, 406, 427
Bme18I GGWCC 2 cut(s) 27, 94
BmgBI CACGTC 2 cut(s) 184, 376
BmgT120I GGNCC 3 cut(s) 27, 94, 346
BmiI GGNNCC 2 cut(s) 96, 338
BmrI ACTGGG 1 cut(s) 143
BmuI ACTGGG 1 cut(s) 143
BpmI CTGGAG 1 cut(s) 323
Bpu10I CCTNAGC 1 cut(s) 31
BsaAI YACGTR 1 cut(s) 466
BsaHI GRCGYC 2 cut(s) 50, 504
BsaJI CCNNGG 1 cut(s) 90
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 203, 233
Bse118I RCCGGY 1 cut(s) 278
Bse1I ACTGG 2 cut(s) 149, 491
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 168
BseMII CTCAG 2 cut(s) 45, 299
BseNI ACTGG 2 cut(s) 149, 491
BseRI GAGGAG 1 cut(s) 208
BseX3I CGGCCG 1 cut(s) 264
BseXI GCAGC 1 cut(s) 294
BseYI CCCAGC 1 cut(s) 419
Bsh1236I CGCG 3 cut(s) 325, 404, 477
Bsh1285I CGRYCG 1 cut(s) 267
BshFI GGCC 2 cut(s) 266, 347
BsiEI CGRYCG 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 399
BsiSI CCGG 1 cut(s) 279
BsnI GGCC 2 cut(s) 266, 347
Bsp1286I GDGCHC 3 cut(s) 263, 339, 399
Bsp143I GATC 3 cut(s) 445, 487, 511
BspACI CCGC 8 cut(s) 47, 290, 313, 325, 357, 385, 404, 425
BspANI GGCC 2 cut(s) 266, 347
BspCNI CTCAG 2 cut(s) 44, 298
BspFNI CGCG 3 cut(s) 325, 404, 477
BspLI GGNNCC 2 cut(s) 96, 338
BspPI GGATC 2 cut(s) 453, 482
BsrBI CCGCTC 1 cut(s) 47
BsrFI RCCGGY 1 cut(s) 278
BsrI ACTGG 2 cut(s) 149, 491
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 3 cut(s) 445, 487, 511
BssNI GRCGYC 2 cut(s) 50, 504
BssT1I CCWWGG 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 484
BstACI GRCGYC 2 cut(s) 50, 504
BstBAI YACGTR 1 cut(s) 466
BstC8I GCNNGC 6 cut(s) 251, 280, 305, 317, 321, 345
BstDEI CTNAG 2 cut(s) 31, 285
BstF5I GGATG 1 cut(s) 168
BstFNI CGCG 3 cut(s) 325, 404, 477
BstH2I RGCGCY 1 cut(s) 74
BstHHI GCGC 2 cut(s) 73, 325
BstKTI GATC 3 cut(s) 448, 490, 514
BstMBI GATC 3 cut(s) 445, 487, 511
BstMCI CGRYCG 1 cut(s) 267
BstMWI GCNNNNNNNGC 8 cut(s) 53, 68, 316, 325, 334, 353, 377, 425
BstUI CGCG 3 cut(s) 325, 404, 477
BstV1I GCAGC 1 cut(s) 294
BstZI CGGCCG 1 cut(s) 264
BsuRI GGCC 2 cut(s) 266, 347
BtrI CACGTC 2 cut(s) 184, 376
BtsCI GGATG 1 cut(s) 168
Cac8I GCNNGC 6 cut(s) 251, 280, 305, 317, 321, 345
CfoI GCGC 2 cut(s) 73, 325
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 3 cut(s) 27, 94, 346
CseI GACGC 2 cut(s) 39, 410
CviAII CATG 2 cut(s) 229, 300
DdeI CTNAG 2 cut(s) 31, 285
DpnI GATC 3 cut(s) 447, 489, 513
DpnII GATC 3 cut(s) 445, 487, 511
EaeI YGGCCR 1 cut(s) 264
EagI CGGCCG 1 cut(s) 264
EciI GGCGGA 1 cut(s) 302
EclXI CGGCCG 1 cut(s) 264
Eco130I CCWWGG 1 cut(s) 90
Eco24I GRGCYC 2 cut(s) 263, 339
Eco47I GGWCC 2 cut(s) 27, 94
Eco47III AGCGCT 1 cut(s) 72
Eco52I CGGCCG 1 cut(s) 264
Eco72I CACGTG 1 cut(s) 466
EcoO109I RGGNCCY 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 90
EcoT38I GRGCYC 2 cut(s) 263, 339
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 2 cut(s) 232, 303
FaiI YATR 2 cut(s) 230, 301
FatI CATG 2 cut(s) 228, 299
FauI CCCGC 1 cut(s) 378
FbaI TGATCA 1 cut(s) 511
Fnu4HI GCNGC 7 cut(s) 48, 290, 308, 326, 357, 405, 426
FokI GGATG 1 cut(s) 155
FriOI GRGCYC 2 cut(s) 263, 339
Fsp4HI GCNGC 7 cut(s) 48, 290, 308, 326, 357, 405, 426
GlaI GCGC 2 cut(s) 72, 324
GluI GCNGC 7 cut(s) 48, 290, 308, 326, 357, 405, 426
GsaI CCCAGC 1 cut(s) 423
GsuI CTGGAG 1 cut(s) 323
HaeII RGCGCY 1 cut(s) 74
HaeIII GGCC 2 cut(s) 266, 347
HapII CCGG 1 cut(s) 279
HgaI GACGC 2 cut(s) 39, 410
HhaI GCGC 2 cut(s) 73, 325
Hin1I GRCGYC 2 cut(s) 50, 504
Hin1II CATG 2 cut(s) 232, 303
Hin6I GCGC 2 cut(s) 71, 323
HinP1I GCGC 2 cut(s) 71, 323
HpaII CCGG 1 cut(s) 279
HphI GGTGA 2 cut(s) 118, 178
Hpy166II GTNNAC 3 cut(s) 181, 211, 463
Hpy188I TCNGA 1 cut(s) 44
Hpy188III TCNNGA 3 cut(s) 155, 500, 515
Hpy8I GTNNAC 3 cut(s) 181, 211, 463
Hpy99I CGWCG 6 cut(s) 55, 67, 85, 335, 404, 488
HpyAV CCTTC 2 cut(s) 112, 142
HpyCH4III ACNGT 1 cut(s) 484
HpyCH4IV ACGT 5 cut(s) 177, 183, 375, 465, 504
HpyF10VI GCNNNNNNNGC 8 cut(s) 53, 68, 316, 325, 334, 353, 377, 425
HpyF3I CTNAG 2 cut(s) 31, 285
HpySE526I ACGT 5 cut(s) 177, 183, 375, 465, 504
Hsp92I GRCGYC 2 cut(s) 50, 504
Hsp92II CATG 2 cut(s) 232, 303
HspAI GCGC 2 cut(s) 71, 323
KroI GCCGGC 1 cut(s) 278
KroNI GCCGGC 1 cut(s) 280
Ksp22I TGATCA 1 cut(s) 511
Kzo9I GATC 3 cut(s) 445, 487, 511
LmnI GCTCC 4 cut(s) 21, 44, 315, 342
Lsp1109I GCAGC 1 cut(s) 294
MaeII ACGT 5 cut(s) 177, 183, 375, 465, 504
MaeIII GTNAC 2 cut(s) 184, 478
MalI GATC 3 cut(s) 447, 489, 513
MbiI CCGCTC 1 cut(s) 47
MboI GATC 3 cut(s) 445, 487, 511
MboII GAAGA 1 cut(s) 229
MhlI GDGCHC 3 cut(s) 263, 339, 399
MluCI AATT 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 507
MnlI CCTC 9 cut(s) 40, 119, 139, 155, 176, 182, 229, 235, 423
MroNI GCCGGC 1 cut(s) 278
MseI TTAA 1 cut(s) 456
MslI CAYNNNNRTG 1 cut(s) 227
MspA1I CMGCKG 2 cut(s) 307, 343
MspI CCGG 1 cut(s) 279
MvnI CGCG 3 cut(s) 325, 404, 477
MwoI GCNNNNNNNGC 8 cut(s) 53, 68, 316, 325, 334, 353, 377, 425
NaeI GCCGGC 1 cut(s) 280
NdeII GATC 3 cut(s) 445, 487, 511
NgoMIV GCCGGC 1 cut(s) 278
NlaIII CATG 2 cut(s) 232, 303
NlaIV GGNNCC 2 cut(s) 96, 338
NmeAIII GCCGAG 1 cut(s) 242
NmuCI GTSAC 2 cut(s) 184, 478
PcsI WCGNNNNNNNCGW 1 cut(s) 59
PdiI GCCGGC 1 cut(s) 280
PkrI GCNGC 7 cut(s) 49, 291, 309, 327, 358, 406, 427
PmaCI CACGTG 1 cut(s) 466
PmlI CACGTG 1 cut(s) 466
Ppu21I YACGTR 1 cut(s) 466
PpuMI RGGWCCY 1 cut(s) 94
Psp5II RGGWCCY 1 cut(s) 94
PspCI CACGTG 1 cut(s) 466
PspFI CCCAGC 1 cut(s) 419
PspN4I GGNNCC 2 cut(s) 96, 338
PspPI GGNCC 3 cut(s) 27, 94, 346
PspPPI RGGWCCY 1 cut(s) 94
PvuII CAGCTG 2 cut(s) 307, 343
RseI CAYNNNNRTG 1 cut(s) 227
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 7 cut(s) 48, 290, 308, 326, 357, 405, 426
Sau3AI GATC 3 cut(s) 445, 487, 511
Sau96I GGNCC 3 cut(s) 27, 94, 346
SduI GDGCHC 3 cut(s) 263, 339, 399
SinI GGWCC 2 cut(s) 27, 94
SmiMI CAYNNNNRTG 1 cut(s) 227
Sse9I AATT 1 cut(s) 36
SsiI CCGC 8 cut(s) 47, 290, 313, 325, 357, 385, 404, 425
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 484
TaiI ACGT 5 cut(s) 180, 186, 378, 468, 507
TaqI TCGA 5 cut(s) 83, 156, 330, 399, 486
TasI AATT 1 cut(s) 36
TauI GCSGC 6 cut(s) 50, 292, 328, 359, 407, 428
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TseFI GTSAC 2 cut(s) 184, 478
TseI GCWGC 1 cut(s) 307
Tsp45I GTSAC 2 cut(s) 184, 478
VpaK11BI GGWCC 2 cut(s) 27, 94
ZraI GACGTC 1 cut(s) 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.